Result of FASTA (ccds) for pFN21AE0228
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0228, 110 aa
  1>>>pF1KE0228 110 - 110 aa - 110 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7991+/-0.000664; mu= 12.2421+/- 0.040
 mean_var=52.8878+/-10.508, 0's: 0 Z-trim(108.9): 31  B-trim: 0 in 0/51
 Lambda= 0.176358
 statistics sampled from 10490 (10515) to 10490 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.323), width:  16
 Scan time:  1.580

The best scores are:                                      opt bits E(32554)
CCDS31662.1 CARD17 gene_id:440068|Hs108|chr11      ( 110)  702 185.8 4.7e-48
CCDS8330.1 CASP1 gene_id:834|Hs108|chr11           ( 404)  543 145.6 2.1e-35
CCDS41705.1 CARD16 gene_id:114769|Hs108|chr11      (  97)  495 133.1   3e-32
CCDS8329.1 CASP1 gene_id:834|Hs108|chr11           ( 383)  487 131.4 3.9e-31
CCDS31661.1 CARD16 gene_id:114769|Hs108|chr11      ( 197)  464 125.4 1.3e-29
CCDS53705.1 CARD18 gene_id:59082|Hs108|chr11       (  90)  302 84.0 1.7e-17


>>CCDS31662.1 CARD17 gene_id:440068|Hs108|chr11           (110 aa)
 initn: 702 init1: 702 opt: 702  Z-score: 976.3  bits: 185.8 E(32554): 4.7e-48
Smith-Waterman score: 702; 100.0% identity (100.0% similar) in 110 aa overlap (1-110:1-110)

               10        20        30        40        50        60
pF1KE0 MADKVLKEKRKQFIRSVGEGTINGLLGELLETRVLSQEEIEIVKCENATVMDKARALLDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MADKVLKEKRKQFIRSVGEGTINGLLGELLETRVLSQEEIEIVKCENATVMDKARALLDS
               10        20        30        40        50        60

               70        80        90       100       110
pF1KE0 VIRKGAPACQICITYICEEDSHLAGTLGLSAGPTSGNHLTTQDSQIVLPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VIRKGAPACQICITYICEEDSHLAGTLGLSAGPTSGNHLTTQDSQIVLPS
               70        80        90       100       110

>>CCDS8330.1 CASP1 gene_id:834|Hs108|chr11                (404 aa)
 initn: 543 init1: 543 opt: 543  Z-score: 749.0  bits: 145.6 E(32554): 2.1e-35
Smith-Waterman score: 543; 80.9% identity (90.0% similar) in 110 aa overlap (1-110:1-110)

               10        20        30        40        50        60
pF1KE0 MADKVLKEKRKQFIRSVGEGTINGLLGELLETRVLSQEEIEIVKCENATVMDKARALLDS
       ::::::::::: ::::.::::::::: :::.::::..::.: :: ::::::::.:::.::
CCDS83 MADKVLKEKRKLFIRSMGEGTINGLLDELLQTRVLNKEEMEKVKRENATVMDKTRALIDS
               10        20        30        40        50        60

               70        80        90       100       110          
pF1KE0 VIRKGAPACQICITYICEEDSHLAGTLGLSAGPTSGNHLTTQDSQIVLPS          
       :: ::: ::::::::::::::.:::::::::  ::::.:. :::: :: :          
CCDS83 VIPKGAQACQICITYICEEDSYLAGTLGLSADQTSGNYLNMQDSQGVLSSFPAPQAVQDN
               70        80        90       100       110       120

CCDS83 PAMPTSSGSEGNVKLCSLEEAQRIWKQKSAEIYPIMDKSSRTRLALIICNEEFDSIPRRT
              130       140       150       160       170       180

>>CCDS41705.1 CARD16 gene_id:114769|Hs108|chr11           (97 aa)
 initn: 495 init1: 495 opt: 495  Z-score: 692.4  bits: 133.1 E(32554): 3e-32
Smith-Waterman score: 495; 82.5% identity (90.7% similar) in 97 aa overlap (1-97:1-97)

               10        20        30        40        50        60
pF1KE0 MADKVLKEKRKQFIRSVGEGTINGLLGELLETRVLSQEEIEIVKCENATVMDKARALLDS
       ::::::::::: ::.:.::::::::: :::.::::.:::.: :: ::::::::.:::.::
CCDS41 MADKVLKEKRKLFIHSMGEGTINGLLDELLQTRVLNQEEMEKVKRENATVMDKTRALIDS
               10        20        30        40        50        60

               70        80        90       100       110
pF1KE0 VIRKGAPACQICITYICEEDSHLAGTLGLSAGPTSGNHLTTQDSQIVLPS
       :: ::: ::::::::::::::.:: ::::::::  ::             
CCDS41 VIPKGAQACQICITYICEEDSYLAETLGLSAGPIPGN             
               70        80        90                    

>>CCDS8329.1 CASP1 gene_id:834|Hs108|chr11                (383 aa)
 initn: 487 init1: 487 opt: 487  Z-score: 672.4  bits: 131.4 E(32554): 3.9e-31
Smith-Waterman score: 487; 83.9% identity (93.5% similar) in 93 aa overlap (1-93:1-93)

               10        20        30        40        50        60
pF1KE0 MADKVLKEKRKQFIRSVGEGTINGLLGELLETRVLSQEEIEIVKCENATVMDKARALLDS
       ::::::::::: ::::.::::::::: :::.::::..::.: :: ::::::::.:::.::
CCDS83 MADKVLKEKRKLFIRSMGEGTINGLLDELLQTRVLNKEEMEKVKRENATVMDKTRALIDS
               10        20        30        40        50        60

               70        80        90       100       110          
pF1KE0 VIRKGAPACQICITYICEEDSHLAGTLGLSAGPTSGNHLTTQDSQIVLPS          
       :: ::: ::::::::::::::.:::::::::.:                           
CCDS83 VIPKGAQACQICITYICEEDSYLAGTLGLSAAPQAVQDNPAMPTSSGSEGNVKLCSLEEA
               70        80        90       100       110       120

CCDS83 QRIWKQKSAEIYPIMDKSSRTRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD
              130       140       150       160       170       180

>>CCDS31661.1 CARD16 gene_id:114769|Hs108|chr11           (197 aa)
 initn: 464 init1: 464 opt: 464  Z-score: 645.1  bits: 125.4 E(32554): 1.3e-29
Smith-Waterman score: 464; 83.5% identity (92.3% similar) in 91 aa overlap (1-91:1-91)

               10        20        30        40        50        60
pF1KE0 MADKVLKEKRKQFIRSVGEGTINGLLGELLETRVLSQEEIEIVKCENATVMDKARALLDS
       ::::::::::: ::.:.::::::::: :::.::::.:::.: :: ::::::::.:::.::
CCDS31 MADKVLKEKRKLFIHSMGEGTINGLLDELLQTRVLNQEEMEKVKRENATVMDKTRALIDS
               10        20        30        40        50        60

               70        80        90       100       110          
pF1KE0 VIRKGAPACQICITYICEEDSHLAGTLGLSAGPTSGNHLTTQDSQIVLPS          
       :: ::: ::::::::::::::.:: ::::::                             
CCDS31 VIPKGAQACQICITYICEEDSYLAETLGLSAALQAVQDNPAMPTCSSPEGRIKLCFLEDA
               70        80        90       100       110       120

CCDS31 QRIWKQKLQRCHVQNTIIKWSERYTSGSFEMQWLFLRTNFIERFWRNILLLPLHKGSLYP
              130       140       150       160       170       180

>>CCDS53705.1 CARD18 gene_id:59082|Hs108|chr11            (90 aa)
 initn: 302 init1: 302 opt: 302  Z-score: 427.6  bits: 84.0 E(32554): 1.7e-17
Smith-Waterman score: 302; 55.1% identity (78.7% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KE0 MADKVLKEKRKQFIRSVGEGTINGLLGELLETRVLSQEEIEIVKCENATVMDKARALLDS
       :::..:..::. ::.::: ::::.::  ::: .:.:::... :. :: :::::::.:.: 
CCDS53 MADQLLRKKRRIFIHSVGAGTINALLDCLLEDEVISQEDMNKVRDENDTVMDKARVLIDL
               10        20        30        40        50        60

               70        80        90       100       110
pF1KE0 VIRKGAPACQICITYICEEDSHLAGTLGLSAGPTSGNHLTTQDSQIVLPS
       :  ::  .:   : ..:::: .::. .::                     
CCDS53 VTGKGPKSCCKFIKHLCEEDPQLASKMGLH                    
               70        80        90                    




110 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 20:29:12 2016 done: Thu Nov  3 20:29:13 2016
 Total Scan time:  1.580 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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