(Circular) (Six-base) MAPSORT of: pFN21AB6367.seq Check: 237 from: 1 to: 5512 pFN21AB6367 5512 bp With 182 enzymes: SgfI * October 20, 2009 10:40 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3322 278 Size: 53 83 186 936 1786 2468 Fragments arranged by size: 2468 1786 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2855 1937 Size: 918 4594 Acc65I G'GTAC_C Cuts at: 2833 2833 Size: 5512 AclI AA'CG_TT Cuts at: 1563 3639 4012 1563 Size: 2076 373 3063 Fragments arranged by size: 3063 2076 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2170 3575 4959 5227 1632 Size: 538 1405 1384 268 1917 Fragments arranged by size: 1917 1405 1384 538 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5315 AflIII A'CryG_T Cuts at: 1203 4411 5388 1203 Size: 3208 977 1327 Fragments arranged by size: 3208 1327 977 AgeI A'CCGG_T Cuts at: 4343 4343 Size: 5512 AhdI GACnn_n'nnGTC Cuts at: 4241 4241 Size: 5512 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5512 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5512 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2054 2086 2054 Size: 32 5480 AlwNI CAG_nnn'CTG Cuts at: 2119 3255 4827 2119 Size: 1136 1572 2804 Fragments arranged by size: 2804 1572 1136 ApaLI G'TGCA_C Cuts at: 2345 3569 4725 2345 Size: 1224 1156 3132 Fragments arranged by size: 3132 1224 1156 ApoI r'AATT_y Cuts at: 1493 2684 2821 3047 3199 5308 1493 Size: 1191 137 226 152 2109 1697 Fragments arranged by size: 2109 1697 1191 226 152 137 AseI AT'TA_AT Cuts at: 160 1032 4066 160 Size: 872 3034 1606 Fragments arranged by size: 3034 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5512 AvaI C'yCGr_G Cuts at: 1870 1943 2837 1870 Size: 73 894 4545 Fragments arranged by size: 4545 894 73 BamHI G'GATC_C Cuts at: 2842 3209 2842 Size: 367 5145 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2833 4288 618 Size: 325 217 627 1046 1455 1842 Fragments arranged by size: 1842 1455 1046 627 325 217 BanII G_rGCy'C Cuts at: 1391 2025 2831 1391 Size: 634 806 4072 Fragments arranged by size: 4072 806 634 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2644 2740 2799 928 Size: 971 745 96 59 3641 Fragments arranged by size: 3641 971 745 96 59 BbvCI CC'TCA_GC Cuts at: 2225 2225 Size: 5512 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3703 3737 1903 Size: 34 1766 34 3678 Fragments arranged by size: 3678 1766 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3404 4614 3404 Size: 1210 4302 BclI T'GATC_A Cuts at: 1548 1548 Size: 5512 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4123 136 Size: 107 122 71 631 605 2451 1525 Fragments arranged by size: 2451 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5507 5507 Size: 5512 BlpI GC'TnA_GC Cuts at: 2929 2929 Size: 5512 Bme1580I G_kGCm'C Cuts at: 1790 2349 3573 4729 1790 Size: 559 1224 1156 2573 Fragments arranged by size: 2573 1224 1156 559 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5512 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2692 3243 4201 Size: 416 53 83 399 24 1275 551 958 Cuts at: 4201 442 Size: 1753 Fragments arranged by size: 1753 1275 958 551 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5512 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2429 2618 4172 1239 Size: 1190 189 1554 2579 Fragments arranged by size: 2579 1554 1190 189 Bpu10I CC'TnA_GC Cuts at: 2019 2225 2273 2019 Size: 206 48 5258 Fragments arranged by size: 5258 206 48 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2522 2712 3637 4502 4800 2522 Size: 190 925 865 298 3234 Fragments arranged by size: 3234 925 865 298 190 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4175 882 Size: 617 2676 2219 Fragments arranged by size: 2676 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3303 493 Size: 711 2099 2702 Fragments arranged by size: 2702 2099 711 BsaBI GATnn'nnATC Cuts at: 2666 5506 2666 Size: 2840 2672 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3319 3701 4336 275 Size: 53 83 186 936 1786 382 635 1451 Fragments arranged by size: 1786 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3945 4343 4617 4764 5175 3945 Size: 398 274 147 411 4282 Fragments arranged by size: 4282 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5287 Fragments arranged by size: 5287 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5512 BseYI C'CCAG_C Cuts at: 4715 5211 4715 Size: 496 5016 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2359 1163 Size: 573 623 4316 Fragments arranged by size: 4316 623 573 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2962 3723 4751 1540 Size: 275 186 961 761 1028 2301 Fragments arranged by size: 2301 1028 961 761 275 186 BsiHKAI G_wGCw'C Cuts at: 2025 2108 2279 2349 3573 3658 4729 2025 Size: 83 171 70 1224 85 1071 2808 Fragments arranged by size: 2808 1224 1071 171 85 83 70 BsmI GAATG_Cn' Cuts at: 3023 3116 3023 Size: 93 5419 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2025 2108 2279 2349 2831 3573 3658 Size: 399 235 83 171 70 482 742 85 Cuts at: 3658 4729 1391 Size: 1071 2174 Fragments arranged by size: 2174 1071 742 482 399 235 171 85 83 70 BspEI T'CCGG_A Cuts at: 5175 5175 Size: 5512 BspHI T'CATG_A Cuts at: 3401 5131 3401 Size: 1730 3782 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2867 844 Size: 2023 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3399 1394 Size: 429 1576 3507 Fragments arranged by size: 3507 1576 429 BsrDI GCAATG_nn' Cuts at: 65 1248 2062 4007 4181 65 Size: 1183 814 1945 174 1396 Fragments arranged by size: 1945 1396 1183 814 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4156 4343 1700 Size: 110 2346 187 2869 Fragments arranged by size: 2869 2346 187 110 BsrGI T'GTAC_A Cuts at: 96 2491 96 Size: 2395 3117 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5512 BssSI C'ACGA_G Cuts at: 3572 4584 3572 Size: 1012 4500 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5512 BstBI TT'CG_AA Cuts at: 4316 4316 Size: 5512 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5512 BstYI r'GATC_y Cuts at: 1972 2608 2842 3209 3594 3611 5063 5149 5161 Size: 636 234 367 385 17 1452 86 12 Cuts at: 5161 5507 1972 Size: 346 1977 Fragments arranged by size: 1977 1452 636 385 367 346 234 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 2214 513 Size: 552 939 210 3811 Fragments arranged by size: 3811 939 552 210 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4773 Fragments arranged by size: 4773 683 56 BtsI GCAGTG_nn' Cuts at: 3028 3822 3842 3028 Size: 794 20 4698 Fragments arranged by size: 4698 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5512 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5477 DraI TTT'AAA Cuts at: 2816 2816 Size: 5512 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4519 809 Size: 507 3203 1802 Fragments arranged by size: 3203 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2211 2770 2959 Size: 54 1425 50 275 18 381 559 189 Cuts at: 2959 3848 5477 8 Size: 889 1629 43 Fragments arranged by size: 1629 1425 889 559 381 275 189 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2959 1537 Size: 275 1147 4090 Fragments arranged by size: 4090 1147 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3442 1353 Size: 2089 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4099 4473 4619 387 Size: 1064 138 2510 374 146 1280 Fragments arranged by size: 2510 1280 1064 374 146 138 EcoICRI GAG'CTC Cuts at: 2023 2023 Size: 5512 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2170 2429 2618 3575 4172 4959 5227 Size: 393 538 259 189 957 597 787 268 Cuts at: 5227 1239 Size: 1524 Fragments arranged by size: 1524 957 787 597 538 393 268 259 189 EcoO109I rG'GnC_Cy Cuts at: 2116 2116 Size: 5512 EcoRI G'AATT_C Cuts at: 2821 3199 2821 Size: 378 5134 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2125 2125 Size: 5512 FspI TGC'GCA Cuts at: 4018 4018 Size: 5512 HaeII r_GCGC'y Cuts at: 1678 4659 1678 Size: 2981 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2401 2433 2593 2625 4153 Size: 32 135 32 829 32 160 32 1528 Cuts at: 4153 4185 4227 4259 1373 Size: 32 42 32 2626 Fragments arranged by size: 2626 1528 829 160 135 42 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2856 3102 669 Size: 988 281 918 246 3079 Fragments arranged by size: 3079 988 918 281 246 HindIII A'AGCT_T Cuts at: 748 2401 748 Size: 1653 3859 HpaI GTT'AAC Cuts at: 3102 3102 Size: 5512 KpnI G_GTAC'C Cuts at: 2837 2837 Size: 5512 MfeI C'AATT_G Cuts at: 3111 3111 Size: 5512 MluI A'CGCG_T Cuts at: 5388 5388 Size: 5512 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2187 4626 4810 1305 Size: 882 2439 184 2007 Fragments arranged by size: 2439 2007 882 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2213 10 Size: 54 1425 343 381 3309 Fragments arranged by size: 3309 1425 381 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3470 3829 3988 518 Size: 648 2304 359 159 2042 Fragments arranged by size: 2304 2042 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2596 2928 3605 4753 4998 1606 Size: 990 332 677 1148 245 2120 Fragments arranged by size: 2120 1148 990 677 332 245 NcoI C'CATG_G Cuts at: 513 1065 2004 2214 513 Size: 552 939 210 3811 Fragments arranged by size: 3811 939 552 210 NdeI CA'TA_TG Cuts at: 387 2422 387 Size: 2035 3477 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5512 NotI GC'GGCC_GC Cuts at: 2959 2959 Size: 5512 NspI r_CATG'y Cuts at: 1132 1229 2743 2870 4415 1132 Size: 97 1514 127 1545 2229 Fragments arranged by size: 2229 1545 1514 127 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5512 PciI A'CATG_T Cuts at: 4411 4411 Size: 5512 PflMI CCAn_nnn'nTGG Cuts at: 1108 2119 1108 Size: 1011 4501 PfoI T'CCnGG_A Cuts at: 2112 2259 2382 2112 Size: 147 123 5242 Fragments arranged by size: 5242 147 123 PmeI GTTT'AAAC Cuts at: 2816 2816 Size: 5512 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3581 3613 5094 5126 3581 Size: 32 1481 32 3967 Fragments arranged by size: 3967 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2116 2116 Size: 5512 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5512 PsiI TTA'TAA Cuts at: 3082 3082 Size: 5512 PstI C_TGCA'G Cuts at: 830 2864 830 Size: 2034 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5512 PvuII CAG'CTG Cuts at: 2596 2596 Size: 5512 SacI G_AGCT'C Cuts at: 2025 2025 Size: 5512 SalI G'TCGA_C Cuts at: 1936 2854 1936 Size: 918 4594 SbfI CC_TGCA'GG Cuts at: 2864 2864 Size: 5512 ScaI AGT'ACT Cuts at: 3760 5472 3760 Size: 1712 3800 SfcI C'TryA_G Cuts at: 826 1045 2173 2591 2860 3995 4676 4867 826 Size: 219 1128 418 269 1135 681 191 1471 Fragments arranged by size: 1471 1135 1128 681 418 269 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5512 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5512 SmaI CCC'GGG Cuts at: 1872 2839 1872 Size: 967 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2537 2727 3616 4517 4779 820 Size: 197 926 594 190 889 901 262 1553 Fragments arranged by size: 1553 926 901 889 594 262 197 190 SnaBI TAC'GTA Cuts at: 493 3303 493 Size: 2810 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5512 SphI G_CATG'C Cuts at: 1132 2870 1132 Size: 1738 3774 SspI AAT'ATT Cuts at: 5 52 3436 5 Size: 47 3384 2081 Fragments arranged by size: 3384 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5512 StyI C'CwwG_G Cuts at: 513 1065 2004 2214 2529 2951 513 Size: 552 939 210 315 422 3074 Fragments arranged by size: 3074 939 552 422 315 210 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3539 3556 3709 3894 4339 325 Size: 1255 1959 17 153 185 445 1498 Fragments arranged by size: 1959 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2491 3758 5470 Size: 274 80 33 51 1443 514 1267 1712 Cuts at: 5470 96 Size: 138 Fragments arranged by size: 1712 1443 1267 514 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2241 2269 2273 2301 5472 5504 2241 Size: 28 4 28 3171 32 2249 Fragments arranged by size: 3171 2249 32 28 28 4 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5512 XbaI T'CTAG_A Cuts at: 2848 2848 Size: 5512 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2035 2593 2035 Size: 558 4954 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5512 XmaI C'CCGG_G Cuts at: 1870 2837 1870 Size: 967 4545 XmnI GAAnn'nnTTC Cuts at: 3641 3641 Size: 5512 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3320 276 Size: 53 83 186 936 1786 2468 Fragments arranged by size: 2468 1786 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AloI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PfoI PmeI PpiI PpuMI PshAI PsiI PstI PvuI PvuII SacI SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI ApaI AscI AvrII BaeI BbeI BfrBI BplI BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoNI EcoRV FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PmlI PspOMI PspXI PsrI RsrII SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI