Result of FASTA (omim) for
pFN21AB6330
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6330, 288 aa
1>>>pF1KB6330 288 - 288 aa - 288 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0100+/-0.000327; mu= 17.9025+/- 0.020
mean_var=74.8785+/-14.814, 0's: 0 Z-trim(116.1): 20 B-trim: 4 in 2/53
Lambda= 0.148216
statistics sampled from 27081 (27101) to 27081 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.705), E-opt: 0.2 (0.318), width: 16
Scan time: 7.560
The best scores are: opt bits E(85289)
NP_005524 (OMIM: 600735) interferon-induced 35 kDa ( 288) 1893 413.7 2e-115
NP_001317159 (OMIM: 600735) interferon-induced 35 ( 286) 1867 408.2 9.6e-114
XP_016880073 (OMIM: 600735) PREDICTED: interferon- ( 268) 1769 387.2 1.9e-107
XP_016880074 (OMIM: 600735) PREDICTED: interferon- ( 266) 1743 381.6 8.7e-106
NP_004679 (OMIM: 603525) N-myc-interactor [Homo sa ( 307) 392 92.8 8.9e-19
XP_005246998 (OMIM: 603525) PREDICTED: N-myc-inter ( 307) 392 92.8 8.9e-19
XP_016860736 (OMIM: 603525) PREDICTED: N-myc-inter ( 307) 392 92.8 8.9e-19
>>NP_005524 (OMIM: 600735) interferon-induced 35 kDa pro (288 aa)
initn: 1893 init1: 1893 opt: 1893 Z-score: 2193.1 bits: 413.7 E(85289): 2e-115
Smith-Waterman score: 1893; 99.7% identity (100.0% similar) in 288 aa overlap (1-288:1-288)
10 20 30 40 50 60
pF1KB6 MSAPLDAALHALQEEQARLKMRLWDLQQLRKELGDSPKDKVPFSVPKIPLVFRGHTQQDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MSAPLDAALHALQEEQARLKMRLWDLQQLRKELGDSPKDKVPFSVPKIPLVFRGHTQQDP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 EVPKSLVSNLRIHCPLLAGSALITFDDPKVAEQVLQQKEHTINMEECRLRVQVQPLELPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 EVPKSLVSNLRIHCPLLAGSALITFDDPKVAEQVLQQKEHTINMEECRLRVQVQPLELPM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 VTTIQVMVSSQLSGRRVLVTGFPASLRLSEEELLDKLEIFFGKTRNGGGDVDVRELLPGS
:::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VTTIQVMMSSQLSGRRVLVTGFPASLRLSEEELLDKLEIFFGKTRNGGGDVDVRELLPGS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 VMLGFARDGVAQRLCQIGQFTVPLGGQQVPLRVSPYVNGEIQKAEIRSQPVPRSVLVLNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VMLGFARDGVAQRLCQIGQFTVPLGGQQVPLRVSPYVNGEIQKAEIRSQPVPRSVLVLNI
190 200 210 220 230 240
250 260 270 280
pF1KB6 PDILDGPELHDVLEIHFQKPTRGGGEVEALTVVPQGQQGLAVFTSESG
::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PDILDGPELHDVLEIHFQKPTRGGGEVEALTVVPQGQQGLAVFTSESG
250 260 270 280
>>NP_001317159 (OMIM: 600735) interferon-induced 35 kDa (286 aa)
initn: 1069 init1: 1069 opt: 1867 Z-score: 2163.1 bits: 408.2 E(85289): 9.6e-114
Smith-Waterman score: 1867; 99.0% identity (99.3% similar) in 288 aa overlap (1-288:1-286)
10 20 30 40 50 60
pF1KB6 MSAPLDAALHALQEEQARLKMRLWDLQQLRKELGDSPKDKVPFSVPKIPLVFRGHTQQDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSAPLDAALHALQEEQARLKMRLWDLQQLRKELGDSPKDKVPFSVPKIPLVFRGHTQQDP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 EVPKSLVSNLRIHCPLLAGSALITFDDPKVAEQVLQQKEHTINMEECRLRVQVQPLELPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVPKSLVSNLRIHCPLLAGSALITFDDPKVAEQVLQQKEHTINMEECRLRVQVQPLELPM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 VTTIQVMVSSQLSGRRVLVTGFPASLRLSEEELLDKLEIFFGKTRNGGGDVDVRELLPGS
:::::. ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTTIQM--SSQLSGRRVLVTGFPASLRLSEEELLDKLEIFFGKTRNGGGDVDVRELLPGS
130 140 150 160 170
190 200 210 220 230 240
pF1KB6 VMLGFARDGVAQRLCQIGQFTVPLGGQQVPLRVSPYVNGEIQKAEIRSQPVPRSVLVLNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VMLGFARDGVAQRLCQIGQFTVPLGGQQVPLRVSPYVNGEIQKAEIRSQPVPRSVLVLNI
180 190 200 210 220 230
250 260 270 280
pF1KB6 PDILDGPELHDVLEIHFQKPTRGGGEVEALTVVPQGQQGLAVFTSESG
::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PDILDGPELHDVLEIHFQKPTRGGGEVEALTVVPQGQQGLAVFTSESG
240 250 260 270 280
>>XP_016880073 (OMIM: 600735) PREDICTED: interferon-indu (268 aa)
initn: 1769 init1: 1769 opt: 1769 Z-score: 2050.2 bits: 387.2 E(85289): 1.9e-107
Smith-Waterman score: 1769; 99.6% identity (100.0% similar) in 268 aa overlap (21-288:1-268)
10 20 30 40 50 60
pF1KB6 MSAPLDAALHALQEEQARLKMRLWDLQQLRKELGDSPKDKVPFSVPKIPLVFRGHTQQDP
::::::::::::::::::::::::::::::::::::::::
XP_016 MRLWDLQQLRKELGDSPKDKVPFSVPKIPLVFRGHTQQDP
10 20 30 40
70 80 90 100 110 120
pF1KB6 EVPKSLVSNLRIHCPLLAGSALITFDDPKVAEQVLQQKEHTINMEECRLRVQVQPLELPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EVPKSLVSNLRIHCPLLAGSALITFDDPKVAEQVLQQKEHTINMEECRLRVQVQPLELPM
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB6 VTTIQVMVSSQLSGRRVLVTGFPASLRLSEEELLDKLEIFFGKTRNGGGDVDVRELLPGS
:::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VTTIQVMMSSQLSGRRVLVTGFPASLRLSEEELLDKLEIFFGKTRNGGGDVDVRELLPGS
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB6 VMLGFARDGVAQRLCQIGQFTVPLGGQQVPLRVSPYVNGEIQKAEIRSQPVPRSVLVLNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VMLGFARDGVAQRLCQIGQFTVPLGGQQVPLRVSPYVNGEIQKAEIRSQPVPRSVLVLNI
170 180 190 200 210 220
250 260 270 280
pF1KB6 PDILDGPELHDVLEIHFQKPTRGGGEVEALTVVPQGQQGLAVFTSESG
::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PDILDGPELHDVLEIHFQKPTRGGGEVEALTVVPQGQQGLAVFTSESG
230 240 250 260
>>XP_016880074 (OMIM: 600735) PREDICTED: interferon-indu (266 aa)
initn: 1069 init1: 1069 opt: 1743 Z-score: 2020.2 bits: 381.6 E(85289): 8.7e-106
Smith-Waterman score: 1743; 98.9% identity (99.3% similar) in 268 aa overlap (21-288:1-266)
10 20 30 40 50 60
pF1KB6 MSAPLDAALHALQEEQARLKMRLWDLQQLRKELGDSPKDKVPFSVPKIPLVFRGHTQQDP
::::::::::::::::::::::::::::::::::::::::
XP_016 MRLWDLQQLRKELGDSPKDKVPFSVPKIPLVFRGHTQQDP
10 20 30 40
70 80 90 100 110 120
pF1KB6 EVPKSLVSNLRIHCPLLAGSALITFDDPKVAEQVLQQKEHTINMEECRLRVQVQPLELPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EVPKSLVSNLRIHCPLLAGSALITFDDPKVAEQVLQQKEHTINMEECRLRVQVQPLELPM
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB6 VTTIQVMVSSQLSGRRVLVTGFPASLRLSEEELLDKLEIFFGKTRNGGGDVDVRELLPGS
:::::. ::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VTTIQM--SSQLSGRRVLVTGFPASLRLSEEELLDKLEIFFGKTRNGGGDVDVRELLPGS
110 120 130 140 150
190 200 210 220 230 240
pF1KB6 VMLGFARDGVAQRLCQIGQFTVPLGGQQVPLRVSPYVNGEIQKAEIRSQPVPRSVLVLNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VMLGFARDGVAQRLCQIGQFTVPLGGQQVPLRVSPYVNGEIQKAEIRSQPVPRSVLVLNI
160 170 180 190 200 210
250 260 270 280
pF1KB6 PDILDGPELHDVLEIHFQKPTRGGGEVEALTVVPQGQQGLAVFTSESG
::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PDILDGPELHDVLEIHFQKPTRGGGEVEALTVVPQGQQGLAVFTSESG
220 230 240 250 260
>>NP_004679 (OMIM: 603525) N-myc-interactor [Homo sapien (307 aa)
initn: 244 init1: 117 opt: 392 Z-score: 458.1 bits: 92.8 E(85289): 8.9e-19
Smith-Waterman score: 392; 29.0% identity (64.5% similar) in 290 aa overlap (6-283:23-305)
10 20 30 40
pF1KB6 MSAPLDAALHALQEEQARLKMRLW-DLQQLRKELGDSPKD-KV
: ..: .: .. ...: ..:.:. :: .. :. ..
NP_004 MEADKDDTQQILKEHSPDEFIKDEQNKGLIDEITKKNIQLKKEIQKLETELQEATKEFQI
10 20 30 40 50 60
50 60 70 80 90
pF1KB6 PFSVPKIPLVFRG-----HTQQDPEVPKSLVSNLRIHCPLLAGSALITFDDPKVAEQVLQ
..:. . : . . .: .. :. . .. . :.:::::. .::..:..
NP_004 KEDIPETKMKFLSVETPENDSQLSNISCSFQVSSKVPYEIQKGQALITFEKEEVAQNVVS
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB6 QKEHTINMEECRLRVQVQPLELPMVTTIQVMVSSQLSGRRVLVTGFPASLRLSEEELLDK
...: ..... :.: ..: .:. . .. .: ..: .. :: .: .:: :... ::
NP_004 MSKHHVQIKDVNLEVTAKP--VPLNSGVRFQVYVEVSKMKINVTEIPDTLR--EDQMRDK
130 140 150 160 170
160 170 180 190 200 210
pF1KB6 LEIFFGKTRNGGGDVDVREL--LPGSVMLGFARDGVAQRLCQIGQFTVPLGGQQVPLRV-
::. :.:.:::::.:: . ::... :.. :::... . .. :: .:. ::
NP_004 LELSFSKSRNGGGEVDRVDYDRQSGSAVITFVEIGVADKILKKKEY--PLYINQTCHRVT
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB6 -SPYVNGEIQKAEIRSQPVPRSVLVLNIPDI-LDGPELHDVLEIHFQKPTRGGGEVEALT
:::.. ...: .: : :.::. .. : .: ..:...::::. :::::...
NP_004 VSPYTEIHLKKYQIFSGTSKRTVLLTGMEGIQMDEEIVEDLINIHFQRAKNGGGEVDVVK
240 250 260 270 280 290
280
pF1KB6 VVPQGQQGLAVFTSESG
:: .: :
NP_004 C-SLGQPHIAYFEE
300
>>XP_005246998 (OMIM: 603525) PREDICTED: N-myc-interacto (307 aa)
initn: 244 init1: 117 opt: 392 Z-score: 458.1 bits: 92.8 E(85289): 8.9e-19
Smith-Waterman score: 392; 29.0% identity (64.5% similar) in 290 aa overlap (6-283:23-305)
10 20 30 40
pF1KB6 MSAPLDAALHALQEEQARLKMRLW-DLQQLRKELGDSPKD-KV
: ..: .: .. ...: ..:.:. :: .. :. ..
XP_005 MEADKDDTQQILKEHSPDEFIKDEQNKGLIDEITKKNIQLKKEIQKLETELQEATKEFQI
10 20 30 40 50 60
50 60 70 80 90
pF1KB6 PFSVPKIPLVFRG-----HTQQDPEVPKSLVSNLRIHCPLLAGSALITFDDPKVAEQVLQ
..:. . : . . .: .. :. . .. . :.:::::. .::..:..
XP_005 KEDIPETKMKFLSVETPENDSQLSNISCSFQVSSKVPYEIQKGQALITFEKEEVAQNVVS
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB6 QKEHTINMEECRLRVQVQPLELPMVTTIQVMVSSQLSGRRVLVTGFPASLRLSEEELLDK
...: ..... :.: ..: .:. . .. .: ..: .. :: .: .:: :... ::
XP_005 MSKHHVQIKDVNLEVTAKP--VPLNSGVRFQVYVEVSKMKINVTEIPDTLR--EDQMRDK
130 140 150 160 170
160 170 180 190 200 210
pF1KB6 LEIFFGKTRNGGGDVDVREL--LPGSVMLGFARDGVAQRLCQIGQFTVPLGGQQVPLRV-
::. :.:.:::::.:: . ::... :.. :::... . .. :: .:. ::
XP_005 LELSFSKSRNGGGEVDRVDYDRQSGSAVITFVEIGVADKILKKKEY--PLYINQTCHRVT
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB6 -SPYVNGEIQKAEIRSQPVPRSVLVLNIPDI-LDGPELHDVLEIHFQKPTRGGGEVEALT
:::.. ...: .: : :.::. .. : .: ..:...::::. :::::...
XP_005 VSPYTEIHLKKYQIFSGTSKRTVLLTGMEGIQMDEEIVEDLINIHFQRAKNGGGEVDVVK
240 250 260 270 280 290
280
pF1KB6 VVPQGQQGLAVFTSESG
:: .: :
XP_005 C-SLGQPHIAYFEE
300
>>XP_016860736 (OMIM: 603525) PREDICTED: N-myc-interacto (307 aa)
initn: 244 init1: 117 opt: 392 Z-score: 458.1 bits: 92.8 E(85289): 8.9e-19
Smith-Waterman score: 392; 29.0% identity (64.5% similar) in 290 aa overlap (6-283:23-305)
10 20 30 40
pF1KB6 MSAPLDAALHALQEEQARLKMRLW-DLQQLRKELGDSPKD-KV
: ..: .: .. ...: ..:.:. :: .. :. ..
XP_016 MEADKDDTQQILKEHSPDEFIKDEQNKGLIDEITKKNIQLKKEIQKLETELQEATKEFQI
10 20 30 40 50 60
50 60 70 80 90
pF1KB6 PFSVPKIPLVFRG-----HTQQDPEVPKSLVSNLRIHCPLLAGSALITFDDPKVAEQVLQ
..:. . : . . .: .. :. . .. . :.:::::. .::..:..
XP_016 KEDIPETKMKFLSVETPENDSQLSNISCSFQVSSKVPYEIQKGQALITFEKEEVAQNVVS
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB6 QKEHTINMEECRLRVQVQPLELPMVTTIQVMVSSQLSGRRVLVTGFPASLRLSEEELLDK
...: ..... :.: ..: .:. . .. .: ..: .. :: .: .:: :... ::
XP_016 MSKHHVQIKDVNLEVTAKP--VPLNSGVRFQVYVEVSKMKINVTEIPDTLR--EDQMRDK
130 140 150 160 170
160 170 180 190 200 210
pF1KB6 LEIFFGKTRNGGGDVDVREL--LPGSVMLGFARDGVAQRLCQIGQFTVPLGGQQVPLRV-
::. :.:.:::::.:: . ::... :.. :::... . .. :: .:. ::
XP_016 LELSFSKSRNGGGEVDRVDYDRQSGSAVITFVEIGVADKILKKKEY--PLYINQTCHRVT
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB6 -SPYVNGEIQKAEIRSQPVPRSVLVLNIPDI-LDGPELHDVLEIHFQKPTRGGGEVEALT
:::.. ...: .: : :.::. .. : .: ..:...::::. :::::...
XP_016 VSPYTEIHLKKYQIFSGTSKRTVLLTGMEGIQMDEEIVEDLINIHFQRAKNGGGEVDVVK
240 250 260 270 280 290
280
pF1KB6 VVPQGQQGLAVFTSESG
:: .: :
XP_016 C-SLGQPHIAYFEE
300
288 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 20:31:26 2016 done: Fri Nov 4 20:31:27 2016
Total Scan time: 7.560 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]