Result of FASTA (ccds) for
pFN21AB8297
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8297, 191 aa
1>>>pF1KB8297 191 - 191 aa - 191 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0295+/-0.000991; mu= 15.1542+/- 0.060
mean_var=84.4013+/-16.462, 0's: 0 Z-trim(106.3): 91 B-trim: 4 in 1/49
Lambda= 0.139605
statistics sampled from 8786 (8891) to 8786 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.655), E-opt: 0.2 (0.273), width: 16
Scan time: 1.850
The best scores are: opt bits E(32554)
CCDS441.1 HPCAL4 gene_id:51440|Hs108|chr1 ( 191) 1275 266.3 8.2e-72
CCDS1689.1 VSNL1 gene_id:7447|Hs108|chr2 ( 191) 1181 247.3 4.1e-66
CCDS1671.1 HPCAL1 gene_id:3241|Hs108|chr2 ( 193) 899 190.6 5.2e-49
CCDS370.1 HPCA gene_id:3208|Hs108|chr1 ( 193) 898 190.4 6e-49
CCDS6292.1 NCALD gene_id:83988|Hs108|chr8 ( 193) 890 188.7 1.8e-48
CCDS6932.1 NCS1 gene_id:23413|Hs108|chr9 ( 190) 746 159.7 9.7e-40
CCDS78448.1 NCS1 gene_id:23413|Hs108|chr9 ( 172) 654 141.2 3.4e-34
CCDS11151.1 RCVRN gene_id:5957|Hs108|chr17 ( 200) 609 132.2 2e-31
CCDS64313.1 KCNIP1 gene_id:30820|Hs108|chr5 ( 188) 555 121.3 3.7e-28
CCDS4374.1 KCNIP1 gene_id:30820|Hs108|chr5 ( 216) 555 121.3 4e-28
CCDS7524.1 KCNIP2 gene_id:30819|Hs108|chr10 ( 220) 555 121.3 4.1e-28
CCDS7525.1 KCNIP2 gene_id:30819|Hs108|chr10 ( 225) 555 121.3 4.2e-28
CCDS34285.1 KCNIP1 gene_id:30820|Hs108|chr5 ( 225) 555 121.3 4.2e-28
CCDS34286.1 KCNIP1 gene_id:30820|Hs108|chr5 ( 227) 555 121.3 4.2e-28
CCDS41562.1 KCNIP2 gene_id:30819|Hs108|chr10 ( 252) 555 121.4 4.5e-28
CCDS7522.1 KCNIP2 gene_id:30819|Hs108|chr10 ( 270) 555 121.4 4.7e-28
CCDS7521.1 KCNIP2 gene_id:30819|Hs108|chr10 ( 285) 555 121.4 4.9e-28
CCDS47035.1 KCNIP4 gene_id:80333|Hs108|chr4 ( 188) 543 118.8 2e-27
CCDS43215.1 KCNIP4 gene_id:80333|Hs108|chr4 ( 216) 543 118.9 2.2e-27
CCDS43217.1 KCNIP4 gene_id:80333|Hs108|chr4 ( 225) 543 118.9 2.2e-27
CCDS3428.1 KCNIP4 gene_id:80333|Hs108|chr4 ( 229) 543 118.9 2.3e-27
CCDS43216.1 KCNIP4 gene_id:80333|Hs108|chr4 ( 250) 543 119.0 2.4e-27
CCDS7523.1 KCNIP2 gene_id:30819|Hs108|chr10 ( 227) 537 117.7 5.2e-27
CCDS33245.1 KCNIP3 gene_id:30818|Hs108|chr2 ( 230) 522 114.7 4.2e-26
CCDS2013.1 KCNIP3 gene_id:30818|Hs108|chr2 ( 256) 522 114.7 4.6e-26
CCDS4865.1 GUCA1B gene_id:2979|Hs108|chr6 ( 200) 494 109.0 1.9e-24
CCDS72761.1 HPCAL4 gene_id:51440|Hs108|chr1 ( 119) 446 99.1 1.1e-21
CCDS4864.1 GUCA1A gene_id:2978|Hs108|chr6 ( 201) 413 92.7 1.6e-19
CCDS64312.1 KCNIP1 gene_id:30820|Hs108|chr5 ( 241) 381 86.3 1.5e-17
CCDS2954.1 GUCA1C gene_id:9626|Hs108|chr3 ( 209) 350 80.0 1.1e-15
CCDS7526.1 KCNIP2 gene_id:30819|Hs108|chr10 ( 184) 273 64.5 4.5e-11
>>CCDS441.1 HPCAL4 gene_id:51440|Hs108|chr1 (191 aa)
initn: 1275 init1: 1275 opt: 1275 Z-score: 1402.7 bits: 266.3 E(32554): 8.2e-72
Smith-Waterman score: 1275; 100.0% identity (100.0% similar) in 191 aa overlap (1-191:1-191)
10 20 30 40 50 60
pF1KB8 MGKTNSKLAPEVLEDLVQNTEFSEQELKQWYKGFLKDCPSGILNLEEFQQLYIKFFPYGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MGKTNSKLAPEVLEDLVQNTEFSEQELKQWYKGFLKDCPSGILNLEEFQQLYIKFFPYGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 ASKFAQHAFRTFDKNGDGTIDFREFICALSVTSRGSFEQKLNWAFEMYDLDGDGRITRLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ASKFAQHAFRTFDKNGDGTIDFREFICALSVTSRGSFEQKLNWAFEMYDLDGDGRITRLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 MLEIIEAIYKMVGTVIMMRMNQDGLTPQQRVDKIFKKMDQDKDDQITLEEFKEAAKSDPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MLEIIEAIYKMVGTVIMMRMNQDGLTPQQRVDKIFKKMDQDKDDQITLEEFKEAAKSDPS
130 140 150 160 170 180
190
pF1KB8 IVLLLQCDMQK
:::::::::::
CCDS44 IVLLLQCDMQK
190
>>CCDS1689.1 VSNL1 gene_id:7447|Hs108|chr2 (191 aa)
initn: 1181 init1: 1181 opt: 1181 Z-score: 1300.4 bits: 247.3 E(32554): 4.1e-66
Smith-Waterman score: 1181; 89.5% identity (99.0% similar) in 191 aa overlap (1-191:1-191)
10 20 30 40 50 60
pF1KB8 MGKTNSKLAPEVLEDLVQNTEFSEQELKQWYKGFLKDCPSGILNLEEFQQLYIKFFPYGD
::: ::::::::.::::..:::.:.:::::::::::::::: ::::::::::.:::::::
CCDS16 MGKQNSKLAPEVMEDLVKSTEFNEHELKQWYKGFLKDCPSGRLNLEEFQQLYVKFFPYGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 ASKFAQHAFRTFDKNGDGTIDFREFICALSVTSRGSFEQKLNWAFEMYDLDGDGRITRLE
::::::::::::::::::::::::::::::.::::::::::::::.::::::::.:::.:
CCDS16 ASKFAQHAFRTFDKNGDGTIDFREFICALSITSRGSFEQKLNWAFNMYDLDGDGKITRVE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 MLEIIEAIYKMVGTVIMMRMNQDGLTPQQRVDKIFKKMDQDKDDQITLEEFKEAAKSDPS
::::::::::::::::::.::.:::::.:::::::.:::..:::::::.:::::::::::
CCDS16 MLEIIEAIYKMVGTVIMMKMNEDGLTPEQRVDKIFSKMDKNKDDQITLDEFKEAAKSDPS
130 140 150 160 170 180
190
pF1KB8 IVLLLQCDMQK
::::::::.::
CCDS16 IVLLLQCDIQK
190
>>CCDS1671.1 HPCAL1 gene_id:3241|Hs108|chr2 (193 aa)
initn: 722 init1: 708 opt: 899 Z-score: 993.4 bits: 190.6 E(32554): 5.2e-49
Smith-Waterman score: 899; 68.6% identity (89.9% similar) in 188 aa overlap (1-188:1-186)
10 20 30 40 50 60
pF1KB8 MGKTNSKLAPEVLEDLVQNTEFSEQELKQWYKGFLKDCPSGILNLEEFQQLYIKFFPYGD
::: :::: ::::.:: .::::...::..::::::::::.: :...::...: .::::::
CCDS16 MGKQNSKLRPEVLQDLRENTEFTDHELQEWYKGFLKDCPTGHLTVDEFKKIYANFFPYGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 ASKFAQHAFRTFDKNGDGTIDFREFICALSVTSRGSFEQKLNWAFEMYDLDGDGRITRLE
:::::.:.::::: :::::::::::: ::::::::..::::.::: ::::::.: :.: :
CCDS16 ASKFAEHVFRTFDTNGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISRSE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 MLEIIEAIYKMVGTVIMMRMNQDGLTPQQRVDKIFKKMDQDKDDQITLEEFKEAAKSDPS
::::..::::::..: :.: .: ::..:.::::..:: ..: ...:::: ..::::::
CCDS16 MLEIVQAIYKMVSSV--MKMPEDESTPEKRTDKIFRQMDTNNDGKLSLEEFIRGAKSDPS
130 140 150 160 170
190
pF1KB8 IVLLLQCDMQK
:: :::::
CCDS16 IVRLLQCDPSSASQF
180 190
>>CCDS370.1 HPCA gene_id:3208|Hs108|chr1 (193 aa)
initn: 729 init1: 713 opt: 898 Z-score: 992.3 bits: 190.4 E(32554): 6e-49
Smith-Waterman score: 898; 69.1% identity (88.8% similar) in 188 aa overlap (1-188:1-186)
10 20 30 40 50 60
pF1KB8 MGKTNSKLAPEVLEDLVQNTEFSEQELKQWYKGFLKDCPSGILNLEEFQQLYIKFFPYGD
::: :::: ::.:.:: .:::::: ::..::::::::::.::::..::...: .::::::
CCDS37 MGKQNSKLRPEMLQDLRENTEFSELELQEWYKGFLKDCPTGILNVDEFKKIYANFFPYGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 ASKFAQHAFRTFDKNGDGTIDFREFICALSVTSRGSFEQKLNWAFEMYDLDGDGRITRLE
:::::.:.::::: :.:::::::::: :::::::: .:::: ::: ::::::.: :.: :
CCDS37 ASKFAEHVFRTFDTNSDGTIDFREFIIALSVTSRGRLEQKLMWAFSMYDLDGNGYISREE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 MLEIIEAIYKMVGTVIMMRMNQDGLTPQQRVDKIFKKMDQDKDDQITLEEFKEAAKSDPS
::::..::::::..: :.: .: ::..:..:::..:: ..: ...:::: ..::::::
CCDS37 MLEIVQAIYKMVSSV--MKMPEDESTPEKRTEKIFRQMDTNNDGKLSLEEFIRGAKSDPS
130 140 150 160 170
190
pF1KB8 IVLLLQCDMQK
:: :::::
CCDS37 IVRLLQCDPSSASQF
180 190
>>CCDS6292.1 NCALD gene_id:83988|Hs108|chr8 (193 aa)
initn: 716 init1: 702 opt: 890 Z-score: 983.6 bits: 188.7 E(32554): 1.8e-48
Smith-Waterman score: 890; 66.5% identity (90.4% similar) in 188 aa overlap (1-188:1-186)
10 20 30 40 50 60
pF1KB8 MGKTNSKLAPEVLEDLVQNTEFSEQELKQWYKGFLKDCPSGILNLEEFQQLYIKFFPYGD
::: :::: :::..::...:.:.:.:...::::::.::::: :..:::...: .::::::
CCDS62 MGKQNSKLRPEVMQDLLESTDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 ASKFAQHAFRTFDKNGDGTIDFREFICALSVTSRGSFEQKLNWAFEMYDLDGDGRITRLE
:::::.:.::::: :::::::::::: ::::::::..::::.::: ::::::.: :.. :
CCDS62 ASKFAEHVFRTFDANGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKAE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 MLEIIEAIYKMVGTVIMMRMNQDGLTPQQRVDKIFKKMDQDKDDQITLEEFKEAAKSDPS
::::..::::::..: :.: .: ::..:..:::..:: ..: ...:::: ..::::::
CCDS62 MLEIVQAIYKMVSSV--MKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKSDPS
130 140 150 160 170
190
pF1KB8 IVLLLQCDMQK
:: :::::
CCDS62 IVRLLQCDPSSAGQF
180 190
>>CCDS6932.1 NCS1 gene_id:23413|Hs108|chr9 (190 aa)
initn: 799 init1: 604 opt: 746 Z-score: 826.9 bits: 159.7 E(32554): 9.7e-40
Smith-Waterman score: 746; 56.8% identity (84.3% similar) in 185 aa overlap (1-185:1-183)
10 20 30 40 50 60
pF1KB8 MGKTNSKLAPEVLEDLVQNTEFSEQELKQWYKGFLKDCPSGILNLEEFQQLYIKFFPYGD
:::.:::: :::.:.:...: :.:.:..::::::.:::::: :. ::..: .:::.::
CCDS69 MGKSNSKLKPEVVEELTRKTYFTEKEVQQWYKGFIKDCPSGQLDAAGFQKIYKQFFPFGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 ASKFAQHAFRTFDKNGDGTIDFREFICALSVTSRGSFEQKLNWAFEMYDLDGDGRITRLE
.::: .: .::.: :: :.: ::: ::::::::....:: :::..::::.:: ::: :
CCDS69 PTKFATFVFNVFDENKDGRIEFSEFIQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 MLEIIEAIYKMVGTVIMMRMNQDGLTPQQRVDKIFKKMDQDKDDQITLEEFKEAAKSDPS
::.:..:::.:::... . ... ::..:::.:: ::.. : ..::.::.:..:.:::
CCDS69 MLDIVDAIYQMVGNTVELPEEEN--TPEKRVDRIFAMMDKNADGKLTLQEFQEGSKADPS
130 140 150 160 170
190
pF1KB8 IVLLLQCDMQK
:: :
CCDS69 IVQALSLYDGLV
180 190
>>CCDS78448.1 NCS1 gene_id:23413|Hs108|chr9 (172 aa)
initn: 688 init1: 493 opt: 654 Z-score: 727.3 bits: 141.2 E(32554): 3.4e-34
Smith-Waterman score: 654; 55.8% identity (83.4% similar) in 163 aa overlap (23-185:5-165)
10 20 30 40 50 60
pF1KB8 MGKTNSKLAPEVLEDLVQNTEFSEQELKQWYKGFLKDCPSGILNLEEFQQLYIKFFPYGD
.:.:..::::::.:::::: :. ::..: .:::.::
CCDS78 MATITEKEVQQWYKGFIKDCPSGQLDAAGFQKIYKQFFPFGD
10 20 30 40
70 80 90 100 110 120
pF1KB8 ASKFAQHAFRTFDKNGDGTIDFREFICALSVTSRGSFEQKLNWAFEMYDLDGDGRITRLE
.::: .: .::.: :: :.: ::: ::::::::....:: :::..::::.:: ::: :
CCDS78 PTKFATFVFNVFDENKDGRIEFSEFIQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNE
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB8 MLEIIEAIYKMVGTVIMMRMNQDGLTPQQRVDKIFKKMDQDKDDQITLEEFKEAAKSDPS
::.:..:::.:::... . ... ::..:::.:: ::.. : ..::.::.:..:.:::
CCDS78 MLDIVDAIYQMVGNTVELPEEEN--TPEKRVDRIFAMMDKNADGKLTLQEFQEGSKADPS
110 120 130 140 150 160
190
pF1KB8 IVLLLQCDMQK
:: :
CCDS78 IVQALSLYDGLV
170
>>CCDS11151.1 RCVRN gene_id:5957|Hs108|chr17 (200 aa)
initn: 600 init1: 600 opt: 609 Z-score: 677.5 bits: 132.2 E(32554): 2e-31
Smith-Waterman score: 609; 45.8% identity (78.1% similar) in 192 aa overlap (1-191:1-192)
10 20 30 40 50
pF1KB8 MGKTNS-KLAPEVLEDLVQNTEFSEQELKQWYKGFLKDCPSGILNLEEFQQLYIKFFPYG
::...: :. :.::.: ::.:::.:: .::..::::::.: .. ..::..: ::::
CCDS11 MGNSKSGALSKEILEELQLNTKFSEEELCSWYQSFLKDCPTGRITQQQFQSIYAKFFPDT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 DASKFAQHAFRTFDKNGDGTIDFREFICALSVTSRGSFEQKLNWAFEMYDLDGDGRITRL
: . .:::.::.::.: :::.::.:.. :: .:. :. .:::.::: .::.::.: :..
CCDS11 DPKAYAQHVFRSFDSNLDGTLDFKEYVIALHMTTAGKTNQKLEWAFSLYDVDGNGTISKN
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 EMLEIIEAIYKMVGTVIMMRMNQDGLTPQQRVDKIFKKMDQDKDDQITLEEFKEAAKSDP
:.:::. ::.::. . . .: ::..:..::.: . .. ::..: .:: :.. ..
CCDS11 EVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKIWKYFGKNDDDKLTEKEFIEGTLANK
130 140 150 160 170 180
180 190
pF1KB8 SIVLLLQCDMQK
:. :.: . ::
CCDS11 EILRLIQFEPQKVKEKMKNA
190 200
>>CCDS64313.1 KCNIP1 gene_id:30820|Hs108|chr5 (188 aa)
initn: 551 init1: 433 opt: 555 Z-score: 619.1 bits: 121.3 E(32554): 3.7e-28
Smith-Waterman score: 555; 43.5% identity (76.8% similar) in 177 aa overlap (10-186:8-182)
10 20 30 40 50 60
pF1KB8 MGKTNSKLAPEVLEDLVQNTEFSEQELKQWYKGFLKDCPSGILNLEEFQQLYIKFFPYGD
:: ::.: .:.:...::. :.:: ..::::..: . :.:.: .:::.::
CCDS64 MTMVCHRPEGLEQLEAQTNFTKRELQVLYRGFKNECPSGVVNEDTFKQIYAQFFPHGD
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 ASKFAQHAFRTFDKNGDGTIDFREFICALSVTSRGSFEQKLNWAFEMYDLDGDGRITRLE
:: .:.. : .:: . :.. :..:. :::. ::. ..:: :.:..::.. :: :.. :
CCDS64 ASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEE
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 MLEIIEAIYKMVGTVIMMRMNQDGLTPQQRVDKIFKKMDQDKDDQITLEEFKEAAKSDPS
:..:..::: :.: . ...: ::.:.:: .:.:::..:: .::.:: :. . : .
CCDS64 MMDIVKAIYDMMGKYTYPVLKED--TPRQHVDVFFQKMDKNKDGIVTLDEFLESCQEDDN
120 130 140 150 160 170
190
pF1KB8 IVLLLQCDMQK
:. ::
CCDS64 IMRSLQLFQNVM
180
>>CCDS4374.1 KCNIP1 gene_id:30820|Hs108|chr5 (216 aa)
initn: 551 init1: 433 opt: 555 Z-score: 618.3 bits: 121.3 E(32554): 4e-28
Smith-Waterman score: 555; 43.5% identity (76.8% similar) in 177 aa overlap (10-186:36-210)
10 20 30
pF1KB8 MGKTNSKLAPEVLEDLVQNTEFSEQELKQWYKGFLKDCP
:: ::.: .:.:...::. :.:: ..::
CCDS43 GTFSSLQTKQRRPSKDKIEDELEMTMVCHRPEGLEQLEAQTNFTKRELQVLYRGFKNECP
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB8 SGILNLEEFQQLYIKFFPYGDASKFAQHAFRTFDKNGDGTIDFREFICALSVTSRGSFEQ
::..: . :.:.: .:::.:::: .:.. : .:: . :.. :..:. :::. ::. ..
CCDS43 SGVVNEDTFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHE
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB8 KLNWAFEMYDLDGDGRITRLEMLEIIEAIYKMVGTVIMMRMNQDGLTPQQRVDKIFKKMD
:: :.:..::.. :: :.. ::..:..::: :.: . ...: ::.:.:: .:.:::
CCDS43 KLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKED--TPRQHVDVFFQKMD
130 140 150 160 170 180
160 170 180 190
pF1KB8 QDKDDQITLEEFKEAAKSDPSIVLLLQCDMQK
..:: .::.:: :. . : .:. ::
CCDS43 KNKDGIVTLDEFLESCQEDDNIMRSLQLFQNVM
190 200 210
191 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 02:07:44 2016 done: Sat Nov 5 02:07:45 2016
Total Scan time: 1.850 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]