Result of FASTA (omim) for
pFN21AB7788
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7788, 514 aa
1>>>pF1KB7788 514 - 514 aa - 514 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3811+/-0.000311; mu= 13.6437+/- 0.020
mean_var=98.9269+/-20.012, 0's: 0 Z-trim(118.3): 176 B-trim: 0 in 0/53
Lambda= 0.128949
statistics sampled from 30928 (31107) to 30928 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.731), E-opt: 0.2 (0.365), width: 16
Scan time: 8.820
The best scores are: opt bits E(85289)
XP_005250323 (OMIM: 616714) PREDICTED: HMG box-con ( 514) 3579 676.2 6.4e-194
NP_036389 (OMIM: 616714) HMG box-containing protei ( 514) 3579 676.2 6.4e-194
XP_016867456 (OMIM: 616714) PREDICTED: HMG box-con ( 514) 3579 676.2 6.4e-194
XP_005250324 (OMIM: 616714) PREDICTED: HMG box-con ( 514) 3579 676.2 6.4e-194
NP_001231191 (OMIM: 616714) HMG box-containing pro ( 524) 3579 676.2 6.5e-194
XP_005258732 (OMIM: 612082) PREDICTED: protein cap (1605) 217 51.0 3.1e-05
XP_005258731 (OMIM: 612082) PREDICTED: protein cap (1606) 217 51.0 3.1e-05
XP_005258730 (OMIM: 612082) PREDICTED: protein cap (1606) 217 51.0 3.1e-05
NP_055940 (OMIM: 612082) protein capicua homolog i (1608) 217 51.0 3.1e-05
XP_011524969 (OMIM: 612082) PREDICTED: protein cap (2002) 217 51.1 3.7e-05
XP_011524968 (OMIM: 612082) PREDICTED: protein cap (2514) 217 51.1 4.5e-05
XP_011524967 (OMIM: 612082) PREDICTED: protein cap (2515) 217 51.1 4.5e-05
XP_011524966 (OMIM: 612082) PREDICTED: protein cap (2515) 217 51.1 4.5e-05
XP_011524964 (OMIM: 612082) PREDICTED: protein cap (2516) 217 51.1 4.5e-05
XP_011524963 (OMIM: 612082) PREDICTED: protein cap (2516) 217 51.1 4.5e-05
XP_011524965 (OMIM: 612082) PREDICTED: protein cap (2516) 217 51.1 4.5e-05
NP_001291744 (OMIM: 612082) protein capicua homolo (2517) 217 51.1 4.5e-05
XP_011524962 (OMIM: 612082) PREDICTED: protein cap (2517) 217 51.1 4.5e-05
NP_821078 (OMIM: 604975,616803) transcription fact ( 377) 196 46.7 0.00014
NP_055402 (OMIM: 605923) transcription factor SOX- ( 446) 197 47.0 0.00014
XP_011519144 (OMIM: 604975,616803) PREDICTED: tran ( 415) 196 46.8 0.00015
NP_008873 (OMIM: 601297) protein SOX-15 [Homo sapi ( 233) 191 45.7 0.00018
NP_001248343 (OMIM: 604975,616803) transcription f ( 642) 196 46.9 0.00022
XP_016875388 (OMIM: 604975,616803) PREDICTED: tran ( 715) 196 46.9 0.00024
XP_016875389 (OMIM: 604975,616803) PREDICTED: tran ( 715) 196 46.9 0.00024
XP_016875387 (OMIM: 604975,616803) PREDICTED: tran ( 715) 196 46.9 0.00024
XP_016875390 (OMIM: 604975,616803) PREDICTED: tran ( 715) 196 46.9 0.00024
XP_016875386 (OMIM: 604975,616803) PREDICTED: tran ( 716) 196 46.9 0.00024
NP_001317714 (OMIM: 604975,616803) transcription f ( 728) 196 46.9 0.00024
XP_011519140 (OMIM: 604975,616803) PREDICTED: tran ( 729) 196 46.9 0.00024
NP_694534 (OMIM: 604975,616803) transcription fact ( 750) 196 46.9 0.00025
XP_016875385 (OMIM: 604975,616803) PREDICTED: tran ( 750) 196 46.9 0.00025
XP_011519139 (OMIM: 604975,616803) PREDICTED: tran ( 751) 196 46.9 0.00025
XP_016875382 (OMIM: 604975,616803) PREDICTED: tran ( 751) 196 46.9 0.00025
XP_016875379 (OMIM: 604975,616803) PREDICTED: tran ( 751) 196 46.9 0.00025
XP_011519137 (OMIM: 604975,616803) PREDICTED: tran ( 751) 196 46.9 0.00025
XP_016875383 (OMIM: 604975,616803) PREDICTED: tran ( 751) 196 46.9 0.00025
XP_016875381 (OMIM: 604975,616803) PREDICTED: tran ( 751) 196 46.9 0.00025
XP_016875380 (OMIM: 604975,616803) PREDICTED: tran ( 751) 196 46.9 0.00025
XP_016875384 (OMIM: 604975,616803) PREDICTED: tran ( 751) 196 46.9 0.00025
XP_011519136 (OMIM: 604975,616803) PREDICTED: tran ( 751) 196 46.9 0.00025
NP_001248344 (OMIM: 604975,616803) transcription f ( 753) 196 46.9 0.00025
XP_011519135 (OMIM: 604975,616803) PREDICTED: tran ( 754) 196 46.9 0.00025
NP_008871 (OMIM: 604975,616803) transcription fact ( 763) 196 46.9 0.00025
XP_011519134 (OMIM: 604975,616803) PREDICTED: tran ( 764) 196 46.9 0.00025
XP_016875378 (OMIM: 604975,616803) PREDICTED: tran ( 792) 196 46.9 0.00026
XP_016875377 (OMIM: 604975,616803) PREDICTED: tran ( 793) 196 46.9 0.00026
NP_003097 (OMIM: 184429,189960,206900) transcripti ( 317) 190 45.6 0.00027
XP_005245680 (OMIM: 604748) PREDICTED: transcripti ( 621) 193 46.3 0.00031
NP_005677 (OMIM: 604748) transcription factor SOX- ( 622) 193 46.3 0.00031
>>XP_005250323 (OMIM: 616714) PREDICTED: HMG box-contain (514 aa)
initn: 3579 init1: 3579 opt: 3579 Z-score: 3602.5 bits: 676.2 E(85289): 6.4e-194
Smith-Waterman score: 3579; 100.0% identity (100.0% similar) in 514 aa overlap (1-514:1-514)
10 20 30 40 50 60
pF1KB7 MVWEVKTNQMPNAVQKLLLVMDKRASGMNDSLELLQCNENLPSSPGYNSCDEHMELDDLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MVWEVKTNQMPNAVQKLLLVMDKRASGMNDSLELLQCNENLPSSPGYNSCDEHMELDDLP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 ELQAVQSDPTQSGMYQLSSDVSHQEYPRSSWNQNTSDIPETTYRENEVDWLTELANIATS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ELQAVQSDPTQSGMYQLSSDVSHQEYPRSSWNQNTSDIPETTYRENEVDWLTELANIATS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSSKSEPAFPHHHWKEETPVRHER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSSKSEPAFPHHHWKEETPVRHER
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 ANSESESGIFCMSSLSDDDDLGWCNSWPSTVWHCFLKGTRLCFHKGSNKEWQDVEDFARA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ANSESESGIFCMSSLSDDDDLGWCNSWPSTVWHCFLKGTRLCFHKGSNKEWQDVEDFARA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 EGCDNEEDLQMGIHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGLLTVECKLDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EGCDNEEDLQMGIHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGLLTVECKLDH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 PFYVKNKGWSSFYPSLTVVQHGIPCCEVHIGDVCLPPGHPDAINFDDSGVFDTFKSYDFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PFYVKNKGWSSFYPSLTVVQHGIPCCEVHIGDVCLPPGHPDAINFDDSGVFDTFKSYDFT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 PMDSSAVYVLSSMARQRRASLSCGGPGGQDFARSGFSKNCGSPGSSQLSSNSLYAKAVKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PMDSSAVYVLSSMARQRRASLSCGGPGGQDFARSGFSKNCGSPGSSQLSSNSLYAKAVKN
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 HSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEER
430 440 450 460 470 480
490 500 510
pF1KB7 RMYTLEAKALAEEQKRLNPDCWKRKRTNSGSQQH
::::::::::::::::::::::::::::::::::
XP_005 RMYTLEAKALAEEQKRLNPDCWKRKRTNSGSQQH
490 500 510
>>NP_036389 (OMIM: 616714) HMG box-containing protein 1 (514 aa)
initn: 3579 init1: 3579 opt: 3579 Z-score: 3602.5 bits: 676.2 E(85289): 6.4e-194
Smith-Waterman score: 3579; 100.0% identity (100.0% similar) in 514 aa overlap (1-514:1-514)
10 20 30 40 50 60
pF1KB7 MVWEVKTNQMPNAVQKLLLVMDKRASGMNDSLELLQCNENLPSSPGYNSCDEHMELDDLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MVWEVKTNQMPNAVQKLLLVMDKRASGMNDSLELLQCNENLPSSPGYNSCDEHMELDDLP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 ELQAVQSDPTQSGMYQLSSDVSHQEYPRSSWNQNTSDIPETTYRENEVDWLTELANIATS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 ELQAVQSDPTQSGMYQLSSDVSHQEYPRSSWNQNTSDIPETTYRENEVDWLTELANIATS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSSKSEPAFPHHHWKEETPVRHER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 PQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSSKSEPAFPHHHWKEETPVRHER
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 ANSESESGIFCMSSLSDDDDLGWCNSWPSTVWHCFLKGTRLCFHKGSNKEWQDVEDFARA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 ANSESESGIFCMSSLSDDDDLGWCNSWPSTVWHCFLKGTRLCFHKGSNKEWQDVEDFARA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 EGCDNEEDLQMGIHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGLLTVECKLDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 EGCDNEEDLQMGIHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGLLTVECKLDH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 PFYVKNKGWSSFYPSLTVVQHGIPCCEVHIGDVCLPPGHPDAINFDDSGVFDTFKSYDFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 PFYVKNKGWSSFYPSLTVVQHGIPCCEVHIGDVCLPPGHPDAINFDDSGVFDTFKSYDFT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 PMDSSAVYVLSSMARQRRASLSCGGPGGQDFARSGFSKNCGSPGSSQLSSNSLYAKAVKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 PMDSSAVYVLSSMARQRRASLSCGGPGGQDFARSGFSKNCGSPGSSQLSSNSLYAKAVKN
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 HSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 HSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEER
430 440 450 460 470 480
490 500 510
pF1KB7 RMYTLEAKALAEEQKRLNPDCWKRKRTNSGSQQH
::::::::::::::::::::::::::::::::::
NP_036 RMYTLEAKALAEEQKRLNPDCWKRKRTNSGSQQH
490 500 510
>>XP_016867456 (OMIM: 616714) PREDICTED: HMG box-contain (514 aa)
initn: 3579 init1: 3579 opt: 3579 Z-score: 3602.5 bits: 676.2 E(85289): 6.4e-194
Smith-Waterman score: 3579; 100.0% identity (100.0% similar) in 514 aa overlap (1-514:1-514)
10 20 30 40 50 60
pF1KB7 MVWEVKTNQMPNAVQKLLLVMDKRASGMNDSLELLQCNENLPSSPGYNSCDEHMELDDLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MVWEVKTNQMPNAVQKLLLVMDKRASGMNDSLELLQCNENLPSSPGYNSCDEHMELDDLP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 ELQAVQSDPTQSGMYQLSSDVSHQEYPRSSWNQNTSDIPETTYRENEVDWLTELANIATS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ELQAVQSDPTQSGMYQLSSDVSHQEYPRSSWNQNTSDIPETTYRENEVDWLTELANIATS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSSKSEPAFPHHHWKEETPVRHER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSSKSEPAFPHHHWKEETPVRHER
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 ANSESESGIFCMSSLSDDDDLGWCNSWPSTVWHCFLKGTRLCFHKGSNKEWQDVEDFARA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ANSESESGIFCMSSLSDDDDLGWCNSWPSTVWHCFLKGTRLCFHKGSNKEWQDVEDFARA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 EGCDNEEDLQMGIHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGLLTVECKLDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EGCDNEEDLQMGIHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGLLTVECKLDH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 PFYVKNKGWSSFYPSLTVVQHGIPCCEVHIGDVCLPPGHPDAINFDDSGVFDTFKSYDFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PFYVKNKGWSSFYPSLTVVQHGIPCCEVHIGDVCLPPGHPDAINFDDSGVFDTFKSYDFT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 PMDSSAVYVLSSMARQRRASLSCGGPGGQDFARSGFSKNCGSPGSSQLSSNSLYAKAVKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PMDSSAVYVLSSMARQRRASLSCGGPGGQDFARSGFSKNCGSPGSSQLSSNSLYAKAVKN
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 HSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEER
430 440 450 460 470 480
490 500 510
pF1KB7 RMYTLEAKALAEEQKRLNPDCWKRKRTNSGSQQH
::::::::::::::::::::::::::::::::::
XP_016 RMYTLEAKALAEEQKRLNPDCWKRKRTNSGSQQH
490 500 510
>>XP_005250324 (OMIM: 616714) PREDICTED: HMG box-contain (514 aa)
initn: 3579 init1: 3579 opt: 3579 Z-score: 3602.5 bits: 676.2 E(85289): 6.4e-194
Smith-Waterman score: 3579; 100.0% identity (100.0% similar) in 514 aa overlap (1-514:1-514)
10 20 30 40 50 60
pF1KB7 MVWEVKTNQMPNAVQKLLLVMDKRASGMNDSLELLQCNENLPSSPGYNSCDEHMELDDLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MVWEVKTNQMPNAVQKLLLVMDKRASGMNDSLELLQCNENLPSSPGYNSCDEHMELDDLP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 ELQAVQSDPTQSGMYQLSSDVSHQEYPRSSWNQNTSDIPETTYRENEVDWLTELANIATS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ELQAVQSDPTQSGMYQLSSDVSHQEYPRSSWNQNTSDIPETTYRENEVDWLTELANIATS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSSKSEPAFPHHHWKEETPVRHER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSSKSEPAFPHHHWKEETPVRHER
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 ANSESESGIFCMSSLSDDDDLGWCNSWPSTVWHCFLKGTRLCFHKGSNKEWQDVEDFARA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ANSESESGIFCMSSLSDDDDLGWCNSWPSTVWHCFLKGTRLCFHKGSNKEWQDVEDFARA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 EGCDNEEDLQMGIHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGLLTVECKLDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EGCDNEEDLQMGIHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGLLTVECKLDH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 PFYVKNKGWSSFYPSLTVVQHGIPCCEVHIGDVCLPPGHPDAINFDDSGVFDTFKSYDFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PFYVKNKGWSSFYPSLTVVQHGIPCCEVHIGDVCLPPGHPDAINFDDSGVFDTFKSYDFT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 PMDSSAVYVLSSMARQRRASLSCGGPGGQDFARSGFSKNCGSPGSSQLSSNSLYAKAVKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PMDSSAVYVLSSMARQRRASLSCGGPGGQDFARSGFSKNCGSPGSSQLSSNSLYAKAVKN
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 HSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEER
430 440 450 460 470 480
490 500 510
pF1KB7 RMYTLEAKALAEEQKRLNPDCWKRKRTNSGSQQH
::::::::::::::::::::::::::::::::::
XP_005 RMYTLEAKALAEEQKRLNPDCWKRKRTNSGSQQH
490 500 510
>>NP_001231191 (OMIM: 616714) HMG box-containing protein (524 aa)
initn: 3579 init1: 3579 opt: 3579 Z-score: 3602.3 bits: 676.2 E(85289): 6.5e-194
Smith-Waterman score: 3579; 100.0% identity (100.0% similar) in 514 aa overlap (1-514:11-524)
10 20 30 40 50
pF1KB7 MVWEVKTNQMPNAVQKLLLVMDKRASGMNDSLELLQCNENLPSSPGYNSC
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MATGLSEHHNMVWEVKTNQMPNAVQKLLLVMDKRASGMNDSLELLQCNENLPSSPGYNSC
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 DEHMELDDLPELQAVQSDPTQSGMYQLSSDVSHQEYPRSSWNQNTSDIPETTYRENEVDW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DEHMELDDLPELQAVQSDPTQSGMYQLSSDVSHQEYPRSSWNQNTSDIPETTYRENEVDW
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 LTELANIATSPQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSSKSEPAFPHHHW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LTELANIATSPQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSSKSEPAFPHHHW
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB7 KEETPVRHERANSESESGIFCMSSLSDDDDLGWCNSWPSTVWHCFLKGTRLCFHKGSNKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEETPVRHERANSESESGIFCMSSLSDDDDLGWCNSWPSTVWHCFLKGTRLCFHKGSNKE
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB7 WQDVEDFARAEGCDNEEDLQMGIHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WQDVEDFARAEGCDNEEDLQMGIHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDG
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB7 LLTVECKLDHPFYVKNKGWSSFYPSLTVVQHGIPCCEVHIGDVCLPPGHPDAINFDDSGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLTVECKLDHPFYVKNKGWSSFYPSLTVVQHGIPCCEVHIGDVCLPPGHPDAINFDDSGV
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB7 FDTFKSYDFTPMDSSAVYVLSSMARQRRASLSCGGPGGQDFARSGFSKNCGSPGSSQLSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FDTFKSYDFTPMDSSAVYVLSSMARQRRASLSCGGPGGQDFARSGFSKNCGSPGSSQLSS
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB7 NSLYAKAVKNHSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NSLYAKAVKNHSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGD
430 440 450 460 470 480
480 490 500 510
pF1KB7 RWKKMKNEERRMYTLEAKALAEEQKRLNPDCWKRKRTNSGSQQH
::::::::::::::::::::::::::::::::::::::::::::
NP_001 RWKKMKNEERRMYTLEAKALAEEQKRLNPDCWKRKRTNSGSQQH
490 500 510 520
>>XP_005258732 (OMIM: 612082) PREDICTED: protein capicua (1605 aa)
initn: 214 init1: 182 opt: 217 Z-score: 215.0 bits: 51.0 E(85289): 3.1e-05
Smith-Waterman score: 217; 35.9% identity (62.4% similar) in 117 aa overlap (403-509:166-279)
380 390 400 410 420 430
pF1KB7 MARQRRASLSCGGPGGQDFARSGFSKNCGSPGSSQLSSNSLYAKAVKNHSSGTVSATSPN
::. . ..:: : . ::. .. :::
XP_005 GEPRLDSETESDHDDAFLSIMSPEIQLPLPPGKRR--TQSLSALPKERDSSSEKDGRSPN
140 150 160 170 180 190
440 450 460 470 480
pF1KB7 K-----CKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEA
: .:::::::.:.:..:. : .:..:::..: :::. : . .:.. : :
XP_005 KREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYALGPKEKQKYHDLA
200 210 220 230 240 250
490 500 510
pF1KB7 KALAEEQKRLNPDCWK-----RKRTNSGSQQH
. : . . .:: :: ::...:
XP_005 FQVKEAHFKAHPD-WKWCNKDRKKSSSEAKPTSLGLAGGHKETRERSMSETGTAAAPGVS
260 270 280 290 300 310
>>XP_005258731 (OMIM: 612082) PREDICTED: protein capicua (1606 aa)
initn: 214 init1: 182 opt: 217 Z-score: 215.0 bits: 51.0 E(85289): 3.1e-05
Smith-Waterman score: 217; 35.9% identity (62.4% similar) in 117 aa overlap (403-509:166-279)
380 390 400 410 420 430
pF1KB7 MARQRRASLSCGGPGGQDFARSGFSKNCGSPGSSQLSSNSLYAKAVKNHSSGTVSATSPN
::. . ..:: : . ::. .. :::
XP_005 GEPRLDSETESDHDDAFLSIMSPEIQLPLPPGKRR--TQSLSALPKERDSSSEKDGRSPN
140 150 160 170 180 190
440 450 460 470 480
pF1KB7 K-----CKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEA
: .:::::::.:.:..:. : .:..:::..: :::. : . .:.. : :
XP_005 KREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYALGPKEKQKYHDLA
200 210 220 230 240 250
490 500 510
pF1KB7 KALAEEQKRLNPDCWK-----RKRTNSGSQQH
. : . . .:: :: ::...:
XP_005 FQVKEAHFKAHPD-WKWCNKDRKKSSSEAKPTSLGLAGGHKETRERSMSETGTAAAPGVS
260 270 280 290 300 310
>>XP_005258730 (OMIM: 612082) PREDICTED: protein capicua (1606 aa)
initn: 214 init1: 182 opt: 217 Z-score: 215.0 bits: 51.0 E(85289): 3.1e-05
Smith-Waterman score: 217; 35.9% identity (62.4% similar) in 117 aa overlap (403-509:166-279)
380 390 400 410 420 430
pF1KB7 MARQRRASLSCGGPGGQDFARSGFSKNCGSPGSSQLSSNSLYAKAVKNHSSGTVSATSPN
::. . ..:: : . ::. .. :::
XP_005 GEPRLDSETESDHDDAFLSIMSPEIQLPLPPGKRR--TQSLSALPKERDSSSEKDGRSPN
140 150 160 170 180 190
440 450 460 470 480
pF1KB7 K-----CKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEA
: .:::::::.:.:..:. : .:..:::..: :::. : . .:.. : :
XP_005 KREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYALGPKEKQKYHDLA
200 210 220 230 240 250
490 500 510
pF1KB7 KALAEEQKRLNPDCWK-----RKRTNSGSQQH
. : . . .:: :: ::...:
XP_005 FQVKEAHFKAHPD-WKWCNKDRKKSSSEAKPTSLGLAGGHKETRERSMSETGTAAAPGVS
260 270 280 290 300 310
>>NP_055940 (OMIM: 612082) protein capicua homolog isofo (1608 aa)
initn: 214 init1: 182 opt: 217 Z-score: 215.0 bits: 51.0 E(85289): 3.1e-05
Smith-Waterman score: 217; 35.9% identity (62.4% similar) in 117 aa overlap (403-509:166-279)
380 390 400 410 420 430
pF1KB7 MARQRRASLSCGGPGGQDFARSGFSKNCGSPGSSQLSSNSLYAKAVKNHSSGTVSATSPN
::. . ..:: : . ::. .. :::
NP_055 GEPRLDSETESDHDDAFLSIMSPEIQLPLPPGKRR--TQSLSALPKERDSSSEKDGRSPN
140 150 160 170 180 190
440 450 460 470 480
pF1KB7 K-----CKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEA
: .:::::::.:.:..:. : .:..:::..: :::. : . .:.. : :
NP_055 KREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYALGPKEKQKYHDLA
200 210 220 230 240 250
490 500 510
pF1KB7 KALAEEQKRLNPDCWK-----RKRTNSGSQQH
. : . . .:: :: ::...:
NP_055 FQVKEAHFKAHPD-WKWCNKDRKKSSSEAKPTSLGLAGGHKETRERSMSETGTAAAPGVS
260 270 280 290 300 310
>>XP_011524969 (OMIM: 612082) PREDICTED: protein capicua (2002 aa)
initn: 214 init1: 182 opt: 217 Z-score: 213.5 bits: 51.1 E(85289): 3.7e-05
Smith-Waterman score: 217; 35.9% identity (62.4% similar) in 117 aa overlap (403-509:1075-1188)
380 390 400 410 420 430
pF1KB7 MARQRRASLSCGGPGGQDFARSGFSKNCGSPGSSQLSSNSLYAKAVKNHSSGTVSATSPN
::. . ..:: : . ::. .. :::
XP_011 GEPRLDSETESDHDDAFLSIMSPEIQLPLPPGKRR--TQSLSALPKERDSSSEKDGRSPN
1050 1060 1070 1080 1090 1100
440 450 460 470 480
pF1KB7 K-----CKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEA
: .:::::::.:.:..:. : .:..:::..: :::. : . .:.. : :
XP_011 KREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYALGPKEKQKYHDLA
1110 1120 1130 1140 1150 1160
490 500 510
pF1KB7 KALAEEQKRLNPDCWK-----RKRTNSGSQQH
. : . . .:: :: ::...:
XP_011 FQVKEAHFKAHPD-WKWCNKDRKKSSSEAKPTSLGLAGGHKETRERSMSETGTAAAPGVS
1170 1180 1190 1200 1210 1220
514 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 22:18:26 2016 done: Fri Nov 4 22:18:28 2016
Total Scan time: 8.820 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]