Result of FASTA (omim) for pFN21AB6414
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6414, 335 aa
  1>>>pF1KB6414 335 - 335 aa - 335 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2231+/-0.000415; mu= 16.6639+/- 0.026
 mean_var=69.5080+/-14.200, 0's: 0 Z-trim(112.2): 59  B-trim: 1071 in 1/51
 Lambda= 0.153836
 statistics sampled from 20966 (21018) to 20966 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.613), E-opt: 0.2 (0.246), width:  16
 Scan time:  8.200

The best scores are:                                      opt bits E(85289)
NP_006532 (OMIM: 612754) glutaredoxin-3 isoform 1  ( 335) 2191 495.5 6.8e-140
NP_001186797 (OMIM: 612754) glutaredoxin-3 isoform ( 335) 2191 495.5 6.8e-140
NP_001308909 (OMIM: 612754) glutaredoxin-3 isoform ( 189) 1247 285.8   5e-77
XP_016870963 (OMIM: 612754) PREDICTED: glutaredoxi ( 189) 1247 285.8   5e-77
NP_057501 (OMIM: 205950,609588,616859,616860) glut ( 157)  323 80.7 2.3e-15
XP_011524565 (OMIM: 603049) PREDICTED: thioredoxin ( 282)  187 50.6 4.6e-06
NP_004777 (OMIM: 603049) thioredoxin-like protein  ( 289)  187 50.7 4.7e-06
XP_016881582 (OMIM: 603049) PREDICTED: thioredoxin ( 289)  187 50.7 4.7e-06
XP_006722643 (OMIM: 603049) PREDICTED: thioredoxin ( 292)  187 50.7 4.7e-06
NP_003320 (OMIM: 187700) thioredoxin isoform 1 [Ho ( 105)  180 48.8 6.1e-06
NP_001139021 (OMIM: 616412) thioredoxin domain-con ( 324)  143 40.9  0.0045
NP_110437 (OMIM: 616412) thioredoxin domain-contai ( 432)  143 41.0  0.0056
NP_057700 (OMIM: 607421,610852) thioredoxin domain ( 588)  144 41.3  0.0062


>>NP_006532 (OMIM: 612754) glutaredoxin-3 isoform 1 [Hom  (335 aa)
 initn: 2191 init1: 2191 opt: 2191  Z-score: 2632.5  bits: 495.5 E(85289): 6.8e-140
Smith-Waterman score: 2191; 100.0% identity (100.0% similar) in 335 aa overlap (1-335:1-335)

               10        20        30        40        50        60
pF1KB6 MAAGAAEAAVAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MAAGAAEAAVAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 FLPSANEHLKEDLNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 FLPSANEHLKEDLNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 IFSDEEVRQGLKAYSSWPTYPQLYVSGELIGGLDIIKELEASEELDTICPKAPKLEERLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 IFSDEEVRQGLKAYSSWPTYPQLYVSGELIGGLDIIKELEASEELDTICPKAPKLEERLK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 VLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 VLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWP
              250       260       270       280       290       300

              310       320       330     
pF1KB6 TYPQLYVKGELVGGLDIVKELKENGELLPILRGEN
       :::::::::::::::::::::::::::::::::::
NP_006 TYPQLYVKGELVGGLDIVKELKENGELLPILRGEN
              310       320       330     

>>NP_001186797 (OMIM: 612754) glutaredoxin-3 isoform 1 [  (335 aa)
 initn: 2191 init1: 2191 opt: 2191  Z-score: 2632.5  bits: 495.5 E(85289): 6.8e-140
Smith-Waterman score: 2191; 100.0% identity (100.0% similar) in 335 aa overlap (1-335:1-335)

               10        20        30        40        50        60
pF1KB6 MAAGAAEAAVAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAGAAEAAVAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 FLPSANEHLKEDLNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FLPSANEHLKEDLNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 IFSDEEVRQGLKAYSSWPTYPQLYVSGELIGGLDIIKELEASEELDTICPKAPKLEERLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IFSDEEVRQGLKAYSSWPTYPQLYVSGELIGGLDIIKELEASEELDTICPKAPKLEERLK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 VLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWP
              250       260       270       280       290       300

              310       320       330     
pF1KB6 TYPQLYVKGELVGGLDIVKELKENGELLPILRGEN
       :::::::::::::::::::::::::::::::::::
NP_001 TYPQLYVKGELVGGLDIVKELKENGELLPILRGEN
              310       320       330     

>>NP_001308909 (OMIM: 612754) glutaredoxin-3 isoform 2 [  (189 aa)
 initn: 1247 init1: 1247 opt: 1247  Z-score: 1503.8  bits: 285.8 E(85289): 5e-77
Smith-Waterman score: 1247; 100.0% identity (100.0% similar) in 189 aa overlap (147-335:1-189)

        120       130       140       150       160       170      
pF1KB6 SSGSFLPSANEHLKEDLNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQF
                                     ::::::::::::::::::::::::::::::
NP_001                               MLFMKGTPQEPRCGFSKQMVEILHKHNIQF
                                             10        20        30

        180       190       200       210       220       230      
pF1KB6 SSFDIFSDEEVRQGLKAYSSWPTYPQLYVSGELIGGLDIIKELEASEELDTICPKAPKLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSFDIFSDEEVRQGLKAYSSWPTYPQLYVSGELIGGLDIIKELEASEELDTICPKAPKLE
               40        50        60        70        80        90

        240       250       260       270       280       290      
pF1KB6 ERLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAY
              100       110       120       130       140       150

        300       310       320       330     
pF1KB6 SNWPTYPQLYVKGELVGGLDIVKELKENGELLPILRGEN
       :::::::::::::::::::::::::::::::::::::::
NP_001 SNWPTYPQLYVKGELVGGLDIVKELKENGELLPILRGEN
              160       170       180         

>>XP_016870963 (OMIM: 612754) PREDICTED: glutaredoxin-3   (189 aa)
 initn: 1247 init1: 1247 opt: 1247  Z-score: 1503.8  bits: 285.8 E(85289): 5e-77
Smith-Waterman score: 1247; 100.0% identity (100.0% similar) in 189 aa overlap (147-335:1-189)

        120       130       140       150       160       170      
pF1KB6 SSGSFLPSANEHLKEDLNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQF
                                     ::::::::::::::::::::::::::::::
XP_016                               MLFMKGTPQEPRCGFSKQMVEILHKHNIQF
                                             10        20        30

        180       190       200       210       220       230      
pF1KB6 SSFDIFSDEEVRQGLKAYSSWPTYPQLYVSGELIGGLDIIKELEASEELDTICPKAPKLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSFDIFSDEEVRQGLKAYSSWPTYPQLYVSGELIGGLDIIKELEASEELDTICPKAPKLE
               40        50        60        70        80        90

        240       250       260       270       280       290      
pF1KB6 ERLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ERLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAY
              100       110       120       130       140       150

        300       310       320       330     
pF1KB6 SNWPTYPQLYVKGELVGGLDIVKELKENGELLPILRGEN
       :::::::::::::::::::::::::::::::::::::::
XP_016 SNWPTYPQLYVKGELVGGLDIVKELKENGELLPILRGEN
              160       170       180         

>>NP_057501 (OMIM: 205950,609588,616859,616860) glutared  (157 aa)
 initn: 318 init1: 179 opt: 323  Z-score: 396.7  bits: 80.7 E(85289): 2.3e-15
Smith-Waterman score: 323; 45.4% identity (82.5% similar) in 97 aa overlap (237-332:43-139)

        210       220       230       240       250       260      
pF1KB6 GELIGGLDIIKELEASEELDTICPKAPKLEERLKVLTNKASVMLFMKGNKQEAKCGFSKQ
                                     :.: .:..: .:..:.::. .. .::::. 
NP_057 LRWGRGAGGGGLWGPGVRAAGSGAGGGGSAEQLDALVKKDKVVVFLKGTPEQPQCGFSNA
             20        30        40        50        60        70  

        270        280       290       300       310       320     
pF1KB6 ILEILNSTGV-EYETFDILEDEEVRQGLKAYSNWPTYPQLYVKGELVGGLDIVKELKENG
       ...::   :: .: ....:.: :.:::.: :::::: ::.:..::.::: ::. ....::
NP_057 VVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYLNGEFVGGCDILLQMHQNG
             80        90       100       110       120       130  

         330                    
pF1KB6 ELLPILRGEN               
       .:.  :.                  
NP_057 DLVEELKKLGIHSALLDEKKDQDSK
            140       150       

>>XP_011524565 (OMIM: 603049) PREDICTED: thioredoxin-lik  (282 aa)
 initn: 154 init1: 154 opt: 187  Z-score: 229.9  bits: 50.6 E(85289): 4.6e-06
Smith-Waterman score: 189; 23.4% identity (52.4% similar) in 269 aa overlap (10-258:1-254)

               10        20        30        40        50        60
pF1KB6 MAAGAAEAAVAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL
                ...:. :::  .:.  :   .. : ::.:       : ..  ... .... 
XP_011          MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKY
                        10        20        30        40        50 

               70        80        90       100       110          
pF1KB6 PQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASS--
       ::. :......    ..   .::..::::::.:. .::. .:: :  : .:...:  .  
XP_011 PQAVFLEVDVHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDP
              60        70        80        90       100       110 

      120                   130       140       150       160      
pF1KB6 GS------------FLPSANEHLKEDLNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMV
       ::            ..:  :.   : ::   ..  :.    :    :  :  :   . ..
XP_011 GSNEDTDIPKGYMDLMPFINKAGCECLN---ESDEHGFDNCLRKDTTFLESDCD-EQLLI
             120       130          140       150       160        

        170       180       190       200       210       220      
pF1KB6 EILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLYVSGELIGGLDIIKELEASEELD
        .  .. ... :.  :.  .  ::       : : .....  :  ..:. .: : ::  .
XP_011 TVAFNQPVKLYSMK-FQGPDNGQG-------PKYVKIFIN--LPRSMDF-EEAERSEPTQ
       170       180        190                200        210      

        230             240       250       260       270       280
pF1KB6 TICPKAPKLEE------RLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYET
       ..      ..:      :   . :  :: .:...:. :                      
XP_011 ALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQSNQGEEETTRISYFTFIGTPVQATNMN
        220       230       240       250       260       270      

              290       300       310       320       330     
pF1KB6 FDILEDEEVRQGLKAYSNWPTYPQLYVKGELVGGLDIVKELKENGELLPILRGEN
                                                              
XP_011 DFKRLF                                                 
        280                                                   

>>NP_004777 (OMIM: 603049) thioredoxin-like protein 1 [H  (289 aa)
 initn: 154 init1: 154 opt: 187  Z-score: 229.7  bits: 50.7 E(85289): 4.7e-06
Smith-Waterman score: 189; 23.4% identity (52.4% similar) in 269 aa overlap (10-258:1-254)

               10        20        30        40        50        60
pF1KB6 MAAGAAEAAVAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL
                ...:. :::  .:.  :   .. : ::.:       : ..  ... .... 
NP_004          MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKY
                        10        20        30        40        50 

               70        80        90       100       110          
pF1KB6 PQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASS--
       ::. :......    ..   .::..::::::.:. .::. .:: :  : .:...:  .  
NP_004 PQAVFLEVDVHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDP
              60        70        80        90       100       110 

      120                   130       140       150       160      
pF1KB6 GS------------FLPSANEHLKEDLNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMV
       ::            ..:  :.   : ::   ..  :.    :    :  :  :   . ..
NP_004 GSNEDTDIPKGYMDLMPFINKAGCECLN---ESDEHGFDNCLRKDTTFLESDCD-EQLLI
             120       130          140       150       160        

        170       180       190       200       210       220      
pF1KB6 EILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLYVSGELIGGLDIIKELEASEELD
        .  .. ... :.  :.  .  ::       : : .....  :  ..:. .: : ::  .
NP_004 TVAFNQPVKLYSMK-FQGPDNGQG-------PKYVKIFIN--LPRSMDF-EEAERSEPTQ
       170       180        190                200        210      

        230             240       250       260       270       280
pF1KB6 TICPKAPKLEE------RLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYET
       ..      ..:      :   . :  :: .:...:. :                      
NP_004 ALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQSNQGEEETTRISYFTFIGTPVQATNMN
        220       230       240       250       260       270      

              290       300       310       320       330     
pF1KB6 FDILEDEEVRQGLKAYSNWPTYPQLYVKGELVGGLDIVKELKENGELLPILRGEN
                                                              
NP_004 DFKRVVGKKGESH                                          
        280                                                   

>>XP_016881582 (OMIM: 603049) PREDICTED: thioredoxin-lik  (289 aa)
 initn: 154 init1: 154 opt: 187  Z-score: 229.7  bits: 50.7 E(85289): 4.7e-06
Smith-Waterman score: 189; 23.4% identity (52.4% similar) in 269 aa overlap (10-258:1-254)

               10        20        30        40        50        60
pF1KB6 MAAGAAEAAVAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL
                ...:. :::  .:.  :   .. : ::.:       : ..  ... .... 
XP_016          MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKY
                        10        20        30        40        50 

               70        80        90       100       110          
pF1KB6 PQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASS--
       ::. :......    ..   .::..::::::.:. .::. .:: :  : .:...:  .  
XP_016 PQAVFLEVDVHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDP
              60        70        80        90       100       110 

      120                   130       140       150       160      
pF1KB6 GS------------FLPSANEHLKEDLNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMV
       ::            ..:  :.   : ::   ..  :.    :    :  :  :   . ..
XP_016 GSNEDTDIPKGYMDLMPFINKAGCECLN---ESDEHGFDNCLRKDTTFLESDCD-EQLLI
             120       130          140       150       160        

        170       180       190       200       210       220      
pF1KB6 EILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLYVSGELIGGLDIIKELEASEELD
        .  .. ... :.  :.  .  ::       : : .....  :  ..:. .: : ::  .
XP_016 TVAFNQPVKLYSMK-FQGPDNGQG-------PKYVKIFIN--LPRSMDF-EEAERSEPTQ
       170       180        190                200        210      

        230             240       250       260       270       280
pF1KB6 TICPKAPKLEE------RLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYET
       ..      ..:      :   . :  :: .:...:. :                      
XP_016 ALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQSNQGEEETTRISYFTFIGTPVQATNMN
        220       230       240       250       260       270      

              290       300       310       320       330     
pF1KB6 FDILEDEEVRQGLKAYSNWPTYPQLYVKGELVGGLDIVKELKENGELLPILRGEN
                                                              
XP_016 DFKRVVGKKGESH                                          
        280                                                   

>>XP_006722643 (OMIM: 603049) PREDICTED: thioredoxin-lik  (292 aa)
 initn: 154 init1: 154 opt: 187  Z-score: 229.7  bits: 50.7 E(85289): 4.7e-06
Smith-Waterman score: 189; 23.4% identity (52.4% similar) in 269 aa overlap (10-258:1-254)

               10        20        30        40        50        60
pF1KB6 MAAGAAEAAVAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL
                ...:. :::  .:.  :   .. : ::.:       : ..  ... .... 
XP_006          MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKY
                        10        20        30        40        50 

               70        80        90       100       110          
pF1KB6 PQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASS--
       ::. :......    ..   .::..::::::.:. .::. .:: :  : .:...:  .  
XP_006 PQAVFLEVDVHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDP
              60        70        80        90       100       110 

      120                   130       140       150       160      
pF1KB6 GS------------FLPSANEHLKEDLNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMV
       ::            ..:  :.   : ::   ..  :.    :    :  :  :   . ..
XP_006 GSNEDTDIPKGYMDLMPFINKAGCECLN---ESDEHGFDNCLRKDTTFLESDCD-EQLLI
             120       130          140       150       160        

        170       180       190       200       210       220      
pF1KB6 EILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLYVSGELIGGLDIIKELEASEELD
        .  .. ... :.  :.  .  ::       : : .....  :  ..:. .: : ::  .
XP_006 TVAFNQPVKLYSMK-FQGPDNGQG-------PKYVKIFIN--LPRSMDF-EEAERSEPTQ
       170       180        190                200        210      

        230             240       250       260       270       280
pF1KB6 TICPKAPKLEE------RLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYET
       ..      ..:      :   . :  :: .:...:. :                      
XP_006 ALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQSNQGEEETTRISYFTFIGTPVQATNMN
        220       230       240       250       260       270      

              290       300       310       320       330     
pF1KB6 FDILEDEEVRQGLKAYSNWPTYPQLYVKGELVGGLDIVKELKENGELLPILRGEN
                                                              
XP_006 DFKRKIHIGKLRVINL                                       
        280       290                                         

>>NP_003320 (OMIM: 187700) thioredoxin isoform 1 [Homo s  (105 aa)
 initn:  79 init1:  79 opt: 180  Z-score: 227.7  bits: 48.8 E(85289): 6.1e-06
Smith-Waterman score: 180; 28.0% identity (64.0% similar) in 100 aa overlap (13-112:2-101)

               10        20        30        40        50        60
pF1KB6 MAAGAAEAAVAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL
                   :... :   :.: :   . .:.:: : : :   : ...  .  :... 
NP_003            MVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKY
                          10        20        30        40         

               70        80        90       100       110       120
pF1KB6 PQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGS
        .: :......   .:. . :.. .::: :::..::. ...::.  .:   .        
NP_003 SNVIFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINELV    
      50        60        70        80        90       100         

              130       140       150       160       170       180
pF1KB6 FLPSANEHLKEDLNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFD




335 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:55:46 2016 done: Fri Nov  4 22:55:48 2016
 Total Scan time:  8.200 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com