FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE0609, 171 aa 1>>>pF1KE0609 171 - 171 aa - 171 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2161+/-0.000321; mu= 13.7192+/- 0.020 mean_var=104.5933+/-24.728, 0's: 0 Z-trim(116.3): 628 B-trim: 1180 in 1/54 Lambda= 0.125407 statistics sampled from 26604 (27366) to 26604 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.699), E-opt: 0.2 (0.321), width: 16 Scan time: 4.090 The best scores are: opt bits E(85289) NP_001123370 (OMIM: 300585) KRAB domain-containing ( 171) 1176 222.7 2.2e-58 NP_060246 (OMIM: 300585) KRAB domain-containing pr ( 166) 1117 212.1 3.5e-55 NP_001034980 (OMIM: 300573) zinc finger protein 67 ( 581) 946 181.7 1.7e-45 XP_011542243 (OMIM: 300573) PREDICTED: zinc finger ( 581) 946 181.7 1.7e-45 XP_011542245 (OMIM: 300573) PREDICTED: zinc finger ( 580) 928 178.5 1.6e-44 NP_001177346 (OMIM: 300573) zinc finger protein 67 ( 576) 887 171.1 2.7e-42 NP_001139763 (OMIM: 300573) zinc finger protein 67 ( 575) 879 169.6 7.3e-42 XP_011542246 (OMIM: 300573) PREDICTED: zinc finger ( 545) 711 139.2 1e-32 NP_001123371 (OMIM: 300585) KRAB domain-containing ( 98) 578 114.3 5.7e-26 NP_001123372 (OMIM: 300585) KRAB domain-containing ( 93) 532 105.9 1.8e-23 NP_008885 (OMIM: 194521) zinc finger protein 33A i ( 811) 396 82.4 1.9e-15 XP_011517952 (OMIM: 194521) PREDICTED: zinc finger ( 811) 396 82.4 1.9e-15 XP_016872106 (OMIM: 194521) PREDICTED: zinc finger ( 818) 396 82.4 1.9e-15 NP_001311107 (OMIM: 194521) zinc finger protein 33 ( 818) 396 82.4 1.9e-15 NP_001265102 (OMIM: 194521) zinc finger protein 33 ( 829) 396 82.4 1.9e-15 NP_001265106 (OMIM: 194521) zinc finger protein 33 ( 832) 396 82.4 1.9e-15 XP_016885219 (OMIM: 300573) PREDICTED: zinc finger ( 514) 390 81.1 2.9e-15 XP_016885220 (OMIM: 300573) PREDICTED: zinc finger ( 514) 390 81.1 2.9e-15 XP_016885217 (OMIM: 300573) PREDICTED: zinc finger ( 514) 390 81.1 2.9e-15 XP_011542247 (OMIM: 300573) PREDICTED: zinc finger ( 514) 390 81.1 2.9e-15 XP_016885218 (OMIM: 300573) PREDICTED: zinc finger ( 514) 390 81.1 2.9e-15 NP_066986 (OMIM: 608191) RB-associated KRAB zinc f ( 714) 388 80.9 4.7e-15 NP_001191385 (OMIM: 608191) RB-associated KRAB zin ( 714) 388 80.9 4.7e-15 XP_016885222 (OMIM: 300573) PREDICTED: zinc finger ( 513) 385 80.2 5.5e-15 XP_016885221 (OMIM: 300573) PREDICTED: zinc finger ( 513) 385 80.2 5.5e-15 XP_011517953 (OMIM: 194521) PREDICTED: zinc finger ( 810) 378 79.1 1.8e-14 NP_008905 (OMIM: 194521) zinc finger protein 33A i ( 810) 378 79.1 1.8e-14 NP_001265099 (OMIM: 194521) zinc finger protein 33 ( 817) 378 79.1 1.8e-14 NP_008886 (OMIM: 194522) zinc finger protein 33B i ( 778) 375 78.6 2.5e-14 NP_001291962 (OMIM: 194522) zinc finger protein 33 ( 785) 375 78.6 2.5e-14 XP_016881866 (OMIM: 613904) PREDICTED: zinc finger ( 686) 365 76.7 8.1e-14 XP_016881865 (OMIM: 613904) PREDICTED: zinc finger ( 686) 365 76.7 8.1e-14 NP_689697 (OMIM: 613904) zinc finger protein 569 i ( 686) 365 76.7 8.1e-14 XP_011524841 (OMIM: 613904) PREDICTED: zinc finger ( 686) 365 76.7 8.1e-14 XP_006723110 (OMIM: 613904) PREDICTED: zinc finger ( 710) 365 76.7 8.3e-14 XP_006723109 (OMIM: 613904) PREDICTED: zinc finger ( 710) 365 76.7 8.3e-14 XP_011524840 (OMIM: 613904) PREDICTED: zinc finger ( 710) 365 76.7 8.3e-14 XP_006723111 (OMIM: 613904) PREDICTED: zinc finger ( 710) 365 76.7 8.3e-14 NP_057349 (OMIM: 194536) zinc finger protein 12 is ( 697) 361 76.0 1.4e-13 NP_008887 (OMIM: 194536) zinc finger protein 12 is ( 659) 354 74.7 3.1e-13 NP_003406 (OMIM: 604753) zinc finger protein 268 i ( 947) 349 74.0 7.5e-13 NP_001159353 (OMIM: 604753) zinc finger protein 26 ( 947) 349 74.0 7.5e-13 NP_001292136 (OMIM: 609451) zinc finger protein 90 ( 92) 330 69.4 1.8e-12 NP_001292135 (OMIM: 609451) zinc finger protein 90 ( 93) 330 69.4 1.8e-12 NP_001292137 (OMIM: 609451) zinc finger protein 90 ( 93) 330 69.4 1.8e-12 NP_001292133 (OMIM: 609451) zinc finger protein 90 ( 113) 330 69.5 2e-12 NP_001311188 (OMIM: 616085) zinc finger protein 37 ( 97) 327 68.9 2.7e-12 XP_016872111 (OMIM: 616085) PREDICTED: zinc finger ( 97) 327 68.9 2.7e-12 NP_001311189 (OMIM: 616085) zinc finger protein 37 ( 97) 327 68.9 2.7e-12 NP_001311182 (OMIM: 616085) zinc finger protein 37 ( 120) 327 69.0 3e-12 >>NP_001123370 (OMIM: 300585) KRAB domain-containing pro (171 aa) initn: 1176 init1: 1176 opt: 1176 Z-score: 1169.1 bits: 222.7 E(85289): 2.2e-58 Smith-Waterman score: 1176; 100.0% identity (100.0% similar) in 171 aa overlap (1-171:1-171) 10 20 30 40 50 60 pF1KE0 MAMSQESLTFKDVFVDFTLEEWQQLDSAQKNLYRDVMLENYSHLVSVGYLVAKPDVIFRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAMSQESLTFKDVFVDFTLEEWQQLDSAQKNLYRDVMLENYSHLVSVGYLVAKPDVIFRL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 GPGEESWMADGGTPVRTCAGEDRPEVWQVDEQIDHYKESQDKLPWQAAFIGKETLKDESG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GPGEESWMADGGTPVRTCAGEDRPEVWQVDEQIDHYKESQDKLPWQAAFIGKETLKDESG 70 80 90 100 110 120 130 140 150 160 170 pF1KE0 QESRTCRKSIYLSTEFDSVRQRLPKYYSWEKAFKTSFKLSWSKWKLCKKER ::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QESRTCRKSIYLSTEFDSVRQRLPKYYSWEKAFKTSFKLSWSKWKLCKKER 130 140 150 160 170 >>NP_060246 (OMIM: 300585) KRAB domain-containing protei (166 aa) initn: 1123 init1: 605 opt: 1117 Z-score: 1111.6 bits: 212.1 E(85289): 3.5e-55 Smith-Waterman score: 1117; 97.1% identity (97.1% similar) in 171 aa overlap (1-171:1-166) 10 20 30 40 50 60 pF1KE0 MAMSQESLTFKDVFVDFTLEEWQQLDSAQKNLYRDVMLENYSHLVSVGYLVAKPDVIFRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 MAMSQESLTFKDVFVDFTLEEWQQLDSAQKNLYRDVMLENYSHLVSVGYLVAKPDVIFRL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 GPGEESWMADGGTPVRTCAGEDRPEVWQVDEQIDHYKESQDKLPWQAAFIGKETLKDESG ::::::::::::::::::: :::::::::::::::::::::::::::::::::::: NP_060 GPGEESWMADGGTPVRTCA-----EVWQVDEQIDHYKESQDKLPWQAAFIGKETLKDESG 70 80 90 100 110 130 140 150 160 170 pF1KE0 QESRTCRKSIYLSTEFDSVRQRLPKYYSWEKAFKTSFKLSWSKWKLCKKER ::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 QESRTCRKSIYLSTEFDSVRQRLPKYYSWEKAFKTSFKLSWSKWKLCKKER 120 130 140 150 160 >>NP_001034980 (OMIM: 300573) zinc finger protein 674 is (581 aa) initn: 973 init1: 946 opt: 946 Z-score: 938.0 bits: 181.7 E(85289): 1.7e-45 Smith-Waterman score: 946; 89.0% identity (95.5% similar) in 154 aa overlap (1-154:1-154) 10 20 30 40 50 60 pF1KE0 MAMSQESLTFKDVFVDFTLEEWQQLDSAQKNLYRDVMLENYSHLVSVGYLVAKPDVIFRL ::::::::::::::::::::::::::::::::::::::::::::::::.::.:::::::: NP_001 MAMSQESLTFKDVFVDFTLEEWQQLDSAQKNLYRDVMLENYSHLVSVGHLVGKPDVIFRL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 GPGEESWMADGGTPVRTCAGEDRPEVWQVDEQIDHYKESQDKLPWQAAFIGKETLKDESG :::.:::::::::::::::::::::::.::::::::::::::. :::::::::::::::: NP_001 GPGDESWMADGGTPVRTCAGEDRPEVWEVDEQIDHYKESQDKFLWQAAFIGKETLKDESG 70 80 90 100 110 120 130 140 150 160 170 pF1KE0 QESRTCRKSIYLSTEFDSVRQRLPKYYSWEKAFKTSFKLSWSKWKLCKKER :: . ::: :::.:.: ::.::::::::::. : NP_001 QECKICRKIIYLNTDFVSVKQRLPKYYSWERCSKHHLNFLGQNRSYVRKKDDGCKAYWKV 130 140 150 160 170 180 NP_001 CLHYNLHKAQPAERFFDPNQRGKALHQKQALRKSQRSQTGEKLYKCTECGKVFIQKANLV 190 200 210 220 230 240 >>XP_011542243 (OMIM: 300573) PREDICTED: zinc finger pro (581 aa) initn: 973 init1: 946 opt: 946 Z-score: 938.0 bits: 181.7 E(85289): 1.7e-45 Smith-Waterman score: 946; 89.0% identity (95.5% similar) in 154 aa overlap (1-154:1-154) 10 20 30 40 50 60 pF1KE0 MAMSQESLTFKDVFVDFTLEEWQQLDSAQKNLYRDVMLENYSHLVSVGYLVAKPDVIFRL ::::::::::::::::::::::::::::::::::::::::::::::::.::.:::::::: XP_011 MAMSQESLTFKDVFVDFTLEEWQQLDSAQKNLYRDVMLENYSHLVSVGHLVGKPDVIFRL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 GPGEESWMADGGTPVRTCAGEDRPEVWQVDEQIDHYKESQDKLPWQAAFIGKETLKDESG :::.:::::::::::::::::::::::.::::::::::::::. :::::::::::::::: XP_011 GPGDESWMADGGTPVRTCAGEDRPEVWEVDEQIDHYKESQDKFLWQAAFIGKETLKDESG 70 80 90 100 110 120 130 140 150 160 170 pF1KE0 QESRTCRKSIYLSTEFDSVRQRLPKYYSWEKAFKTSFKLSWSKWKLCKKER :: . ::: :::.:.: ::.::::::::::. : XP_011 QECKICRKIIYLNTDFVSVKQRLPKYYSWERCSKHHLNFLGQNRSYVRKKDDGCKAYWKV 130 140 150 160 170 180 XP_011 CLHYNLHKAQPAERFFDPNQRGKALHQKQALRKSQRSQTGEKLYKCTECGKVFIQKANLV 190 200 210 220 230 240 >>XP_011542245 (OMIM: 300573) PREDICTED: zinc finger pro (580 aa) initn: 953 init1: 556 opt: 928 Z-score: 920.4 bits: 178.5 E(85289): 1.6e-44 Smith-Waterman score: 928; 88.3% identity (94.8% similar) in 154 aa overlap (1-154:1-153) 10 20 30 40 50 60 pF1KE0 MAMSQESLTFKDVFVDFTLEEWQQLDSAQKNLYRDVMLENYSHLVSVGYLVAKPDVIFRL ::::::::::::::::::::::::::::::::::::::::::::::::.::.:::::::: XP_011 MAMSQESLTFKDVFVDFTLEEWQQLDSAQKNLYRDVMLENYSHLVSVGHLVGKPDVIFRL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 GPGEESWMADGGTPVRTCAGEDRPEVWQVDEQIDHYKESQDKLPWQAAFIGKETLKDESG :::.:::::::::::::::::::: ::.::::::::::::::. :::::::::::::::: XP_011 GPGDESWMADGGTPVRTCAGEDRP-VWEVDEQIDHYKESQDKFLWQAAFIGKETLKDESG 70 80 90 100 110 130 140 150 160 170 pF1KE0 QESRTCRKSIYLSTEFDSVRQRLPKYYSWEKAFKTSFKLSWSKWKLCKKER :: . ::: :::.:.: ::.::::::::::. : XP_011 QECKICRKIIYLNTDFVSVKQRLPKYYSWERCSKHHLNFLGQNRSYVRKKDDGCKAYWKV 120 130 140 150 160 170 XP_011 CLHYNLHKAQPAERFFDPNQRGKALHQKQALRKSQRSQTGEKLYKCTECGKVFIQKANLV 180 190 200 210 220 230 >>NP_001177346 (OMIM: 300573) zinc finger protein 674 is (576 aa) initn: 920 init1: 517 opt: 887 Z-score: 880.3 bits: 171.1 E(85289): 2.7e-42 Smith-Waterman score: 887; 85.7% identity (92.2% similar) in 154 aa overlap (1-154:1-149) 10 20 30 40 50 60 pF1KE0 MAMSQESLTFKDVFVDFTLEEWQQLDSAQKNLYRDVMLENYSHLVSVGYLVAKPDVIFRL ::::::::::::::::::::::::::::::::::::::::::::::::.::.:::::::: NP_001 MAMSQESLTFKDVFVDFTLEEWQQLDSAQKNLYRDVMLENYSHLVSVGHLVGKPDVIFRL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 GPGEESWMADGGTPVRTCAGEDRPEVWQVDEQIDHYKESQDKLPWQAAFIGKETLKDESG :::.::::::::::::::: :::.::::::::::::::. :::::::::::::::: NP_001 GPGDESWMADGGTPVRTCA-----EVWEVDEQIDHYKESQDKFLWQAAFIGKETLKDESG 70 80 90 100 110 130 140 150 160 170 pF1KE0 QESRTCRKSIYLSTEFDSVRQRLPKYYSWEKAFKTSFKLSWSKWKLCKKER :: . ::: :::.:.: ::.::::::::::. : NP_001 QECKICRKIIYLNTDFVSVKQRLPKYYSWERCSKHHLNFLGQNRSYVRKKDDGCKAYWKV 120 130 140 150 160 170 NP_001 CLHYNLHKAQPAERFFDPNQRGKALHQKQALRKSQRSQTGEKLYKCTECGKVFIQKANLV 180 190 200 210 220 230 >>NP_001139763 (OMIM: 300573) zinc finger protein 674 is (575 aa) initn: 914 init1: 517 opt: 879 Z-score: 872.5 bits: 169.6 E(85289): 7.3e-42 Smith-Waterman score: 879; 85.1% identity (91.6% similar) in 154 aa overlap (1-154:1-148) 10 20 30 40 50 60 pF1KE0 MAMSQESLTFKDVFVDFTLEEWQQLDSAQKNLYRDVMLENYSHLVSVGYLVAKPDVIFRL ::::::::::::::::::::::::::::::::::::::::::::::::.::.:::::::: NP_001 MAMSQESLTFKDVFVDFTLEEWQQLDSAQKNLYRDVMLENYSHLVSVGHLVGKPDVIFRL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 GPGEESWMADGGTPVRTCAGEDRPEVWQVDEQIDHYKESQDKLPWQAAFIGKETLKDESG :::.::::::::::::::: ::.::::::::::::::. :::::::::::::::: NP_001 GPGDESWMADGGTPVRTCA------VWEVDEQIDHYKESQDKFLWQAAFIGKETLKDESG 70 80 90 100 110 130 140 150 160 170 pF1KE0 QESRTCRKSIYLSTEFDSVRQRLPKYYSWEKAFKTSFKLSWSKWKLCKKER :: . ::: :::.:.: ::.::::::::::. : NP_001 QECKICRKIIYLNTDFVSVKQRLPKYYSWERCSKHHLNFLGQNRSYVRKKDDGCKAYWKV 120 130 140 150 160 170 NP_001 CLHYNLHKAQPAERFFDPNQRGKALHQKQALRKSQRSQTGEKLYKCTECGKVFIQKANLV 180 190 200 210 220 230 >>XP_011542246 (OMIM: 300573) PREDICTED: zinc finger pro (545 aa) initn: 738 init1: 711 opt: 711 Z-score: 708.5 bits: 139.2 E(85289): 1e-32 Smith-Waterman score: 711; 85.6% identity (94.1% similar) in 118 aa overlap (37-154:1-118) 10 20 30 40 50 60 pF1KE0 SLTFKDVFVDFTLEEWQQLDSAQKNLYRDVMLENYSHLVSVGYLVAKPDVIFRLGPGEES ::::::::::::.::.:::::::::::.:: XP_011 MLENYSHLVSVGHLVGKPDVIFRLGPGDES 10 20 30 70 80 90 100 110 120 pF1KE0 WMADGGTPVRTCAGEDRPEVWQVDEQIDHYKESQDKLPWQAAFIGKETLKDESGQESRTC :::::::::::::::::::::.::::::::::::::. :::::::::::::::::: . : XP_011 WMADGGTPVRTCAGEDRPEVWEVDEQIDHYKESQDKFLWQAAFIGKETLKDESGQECKIC 40 50 60 70 80 90 130 140 150 160 170 pF1KE0 RKSIYLSTEFDSVRQRLPKYYSWEKAFKTSFKLSWSKWKLCKKER :: :::.:.: ::.::::::::::. : XP_011 RKIIYLNTDFVSVKQRLPKYYSWERCSKHHLNFLGQNRSYVRKKDDGCKAYWKVCLHYNL 100 110 120 130 140 150 >>NP_001123371 (OMIM: 300585) KRAB domain-containing pro (98 aa) initn: 578 init1: 578 opt: 578 Z-score: 587.2 bits: 114.3 E(85289): 5.7e-26 Smith-Waterman score: 578; 98.8% identity (100.0% similar) in 86 aa overlap (1-86:1-86) 10 20 30 40 50 60 pF1KE0 MAMSQESLTFKDVFVDFTLEEWQQLDSAQKNLYRDVMLENYSHLVSVGYLVAKPDVIFRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAMSQESLTFKDVFVDFTLEEWQQLDSAQKNLYRDVMLENYSHLVSVGYLVAKPDVIFRL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 GPGEESWMADGGTPVRTCAGEDRPEVWQVDEQIDHYKESQDKLPWQAAFIGKETLKDESG ::::::::::::::::::::::::.: NP_001 GPGEESWMADGGTPVRTCAGEDRPDVSIFASCILKCCY 70 80 90 >>NP_001123372 (OMIM: 300585) KRAB domain-containing pro (93 aa) initn: 532 init1: 532 opt: 532 Z-score: 542.5 bits: 105.9 E(85289): 1.8e-23 Smith-Waterman score: 532; 100.0% identity (100.0% similar) in 79 aa overlap (1-79:1-79) 10 20 30 40 50 60 pF1KE0 MAMSQESLTFKDVFVDFTLEEWQQLDSAQKNLYRDVMLENYSHLVSVGYLVAKPDVIFRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAMSQESLTFKDVFVDFTLEEWQQLDSAQKNLYRDVMLENYSHLVSVGYLVAKPDVIFRL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 GPGEESWMADGGTPVRTCAGEDRPEVWQVDEQIDHYKESQDKLPWQAAFIGKETLKDESG ::::::::::::::::::: NP_001 GPGEESWMADGGTPVRTCADVSIFASCILKCCY 70 80 90 171 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 04:01:33 2016 done: Mon Nov 7 04:01:34 2016 Total Scan time: 4.090 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]