FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6160, 116 aa
  1>>>pF1KE6160 116 - 116 aa - 116 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9659+/-0.000231; mu= 12.9707+/- 0.015
 mean_var=64.5750+/-12.747, 0's: 0 Z-trim(123.4): 4  B-trim: 0 in 0/55
 Lambda= 0.159603
 statistics sampled from 43108 (43114) to 43108 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.846), E-opt: 0.2 (0.506), width:  16
 Scan time:  4.280

The best scores are:                                      opt bits E(85289)
NP_149097 (OMIM: 611178) galanin-like peptide isof ( 116)  779 186.5 8.4e-48
NP_001139018 (OMIM: 611178) galanin-like peptide i (  49)  180 48.3 1.4e-06
NP_057057 (OMIM: 137035,616461) galanin peptides p ( 123)  134 38.0  0.0045


>>NP_149097 (OMIM: 611178) galanin-like peptide isoform   (116 aa)
 initn: 779 init1: 779 opt: 779  Z-score: 979.2  bits: 186.5 E(85289): 8.4e-48
Smith-Waterman score: 779; 100.0% identity (100.0% similar) in 116 aa overlap (1-116:1-116)

               10        20        30        40        50        60
pF1KE6 MAPPSVPLVLLLVLLLSLAETPASAPAHRGRGGWTLNSAGYLLGPVLHLPQMGDQDGKRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 MAPPSVPLVLLLVLLLSLAETPASAPAHRGRGGWTLNSAGYLLGPVLHLPQMGDQDGKRE
               10        20        30        40        50        60

               70        80        90       100       110      
pF1KE6 TALEILDLWKAIDGLPYSHPPQPSKRNVMETFAKPEIGDLGMLSMKIPKEEDVLKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 TALEILDLWKAIDGLPYSHPPQPSKRNVMETFAKPEIGDLGMLSMKIPKEEDVLKS
               70        80        90       100       110      

>>NP_001139018 (OMIM: 611178) galanin-like peptide isofo  (49 aa)
 initn: 180 init1: 180 opt: 180  Z-score: 239.1  bits: 48.3 E(85289): 1.4e-06
Smith-Waterman score: 180; 100.0% identity (100.0% similar) in 29 aa overlap (1-29:1-29)

               10        20        30        40        50        60
pF1KE6 MAPPSVPLVLLLVLLLSLAETPASAPAHRGRGGWTLNSAGYLLGPVLHLPQMGDQDGKRE
       :::::::::::::::::::::::::::::                               
NP_001 MAPPSVPLVLLLVLLLSLAETPASAPAHRSSTFPKWVTKTERGRQPLRS           
               10        20        30        40                    

>>NP_057057 (OMIM: 137035,616461) galanin peptides prepr  (123 aa)
 initn: 132 init1:  94 opt: 134  Z-score: 176.2  bits: 38.0 E(85289): 0.0045
Smith-Waterman score: 134; 36.4% identity (58.7% similar) in 121 aa overlap (10-116:7-123)

               10        20            30        40          50    
pF1KE6 MAPPSVPLVLLLVLLLSLAETPASA----PAHRGRGGWTLNSAGYLLGP--VLHLPQMGD
                :::. ::  :   :::    ::.. :: ::::::::::::  : .  ...:
NP_057    MARGSALLLASLLLAAALSASAGLWSPAKEKRG-WTLNSAGYLLGPHAVGNHRSFSD
                  10        20        30         40        50      

              60        70        80        90       100           
pF1KE6 QDG---KRETALEILDLWKAIDGLPYSHPPQPSKRNVMETFAKPEIGDLGMLS--MKIP-
       ..:   :::  :.  :  :   ..  : : .   :...: ..  .. . : :.  . .: 
NP_057 KNGLTSKRE--LRPEDDMKP-GSFDRSIPENNIMRTIIEFLSFLHLKEAGALDRLLDLPA
         60          70         80        90       100       110   

        110      
pF1KE6 --KEEDVLKS
         . ::. .:
NP_057 AASSEDIERS
           120   




116 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:58:23 2016 done: Tue Nov  8 09:58:24 2016
 Total Scan time:  4.280 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]