FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5667, 337 aa
  1>>>pF1KB5667 337 - 337 aa - 337 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.8126+/-0.00102; mu= -4.7462+/- 0.062
 mean_var=393.9402+/-78.891, 0's: 0 Z-trim(116.5): 3  B-trim: 0 in 0/52
 Lambda= 0.064619
 statistics sampled from 17145 (17147) to 17145 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.805), E-opt: 0.2 (0.527), width:  16
 Scan time:  3.370

The best scores are:                                      opt bits E(32554)
CCDS72873.1 LIX1L gene_id:128077|Hs108|chr1        ( 337) 2266 224.4 1.1e-58
CCDS4088.1 LIX1 gene_id:167410|Hs108|chr5          ( 282)  980 104.4 1.1e-22


>>CCDS72873.1 LIX1L gene_id:128077|Hs108|chr1             (337 aa)
 initn: 2266 init1: 2266 opt: 2266  Z-score: 1167.4  bits: 224.4 E(32554): 1.1e-58
Smith-Waterman score: 2266; 100.0% identity (100.0% similar) in 337 aa overlap (1-337:1-337)

               10        20        30        40        50        60
pF1KB5 METMRAQRLQPGVGTSGRGTLRALRPGVTGAAAATATPPAGPPPAPPPPAPPPPPLLLSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 METMRAQRLQPGVGTSGRGTLRALRPGVTGAAAATATPPAGPPPAPPPPAPPPPPLLLSG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 APGLPLPPGAAGSPAVLREAVEAVVRSFAKHTQGYGRVNVVEALQEFWQMKQSRGADLKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 APGLPLPPGAAGSPAVLREAVEAVVRSFAKHTQGYGRVNVVEALQEFWQMKQSRGADLKN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 GALVVYEMVPSNSPPYVCYVTLPGGSCFGSFQFCPTKAEARRSAAKIALMNSVFNEHPSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 GALVVYEMVPSNSPPYVCYVTLPGGSCFGSFQFCPTKAEARRSAAKIALMNSVFNEHPSR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 RITDEFIEKSVSEALASFNGNREEADNPNTGIGAFRFMLESNKGKSMLEFQELMTVFQLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 RITDEFIEKSVSEALASFNGNREEADNPNTGIGAFRFMLESNKGKSMLEFQELMTVFQLL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 HWNGSLKAMRERQCSRQEVLAHYSHRALDDDIRHQMALDWVSREQSVPGALSRELASTER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 HWNGSLKAMRERQCSRQEVLAHYSHRALDDDIRHQMALDWVSREQSVPGALSRELASTER
              250       260       270       280       290       300

              310       320       330       
pF1KB5 ELDEARLAGKELRFHKEKKDILVLAAGQLGNMHSSNC
       :::::::::::::::::::::::::::::::::::::
CCDS72 ELDEARLAGKELRFHKEKKDILVLAAGQLGNMHSSNC
              310       320       330       

>>CCDS4088.1 LIX1 gene_id:167410|Hs108|chr5               (282 aa)
 initn: 1033 init1: 979 opt: 980  Z-score: 520.4  bits: 104.4 E(32554): 1.1e-22
Smith-Waterman score: 980; 61.2% identity (86.2% similar) in 232 aa overlap (98-329:28-259)

        70        80        90       100       110       120       
pF1KB5 PGAAGSPAVLREAVEAVVRSFAKHTQGYGRVNVVEALQEFWQMKQSRGADLKNGALVVYE
                                     .:::  :::::. ::.. : . . ..::::
CCDS40    MDRTLESLRHIIAQVLPHRDPALVFKDLNVVSMLQEFWESKQQQKAAFPSEGVVVYE
                  10        20        30        40        50       

       130       140       150       160       170       180       
pF1KB5 MVPSNSPPYVCYVTLPGGSCFGSFQFCPTKAEARRSAAKIALMNSVFNEHPSRRITDEFI
        .:. .::.: :::::::::::.:: : ..:::::.:::.::.::.::: :::::: :::
CCDS40 SLPAPGPPFVSYVTLPGGSCFGNFQCCLSRAEARRDAAKVALINSLFNELPSRRITKEFI
        60        70        80        90       100       110       

       190       200       210       220       230       240       
pF1KB5 EKSVSEALASFNGNREEADNPNTGIGAFRFMLESNKGKSMLEFQELMTVFQLLHWNGSLK
        .::.::.:: .:. ..::.:.:..::...::::: ::.:::::::::.:::::::::::
CCDS40 MESVQEAVASTSGTLDDADDPSTSVGAYHYMLESNMGKTMLEFQELMTIFQLLHWNGSLK
       120       130       140       150       160       170       

       250       260       270       280       290       300       
pF1KB5 AMRERQCSRQEVLAHYSHRALDDDIRHQMALDWVSREQSVPGALSRELASTERELDEARL
       :.:: .::::::...::. .::. .: .:::::. .:.. :: .:.::  . :.:.::: 
CCDS40 ALRETKCSRQEVISYYSQYSLDEKMRSHMALDWIMKERDSPGIVSQELRMALRQLEEARK
       180       190       200       210       220       230       

       310       320       330                      
pF1KB5 AGKELRFHKEKKDILVLAAGQLGNMHSSNC               
       ::.::::.::::.:: ::  :.                       
CCDS40 AGQELRFYKEKKEILSLALTQICSDPDTSSPSDDQLSLTALCGYH
       240       250       260       270       280  




337 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 04:02:02 2016 done: Mon Nov  7 04:02:02 2016
 Total Scan time:  3.370 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]