FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB6165, 648 aa 1>>>pF1KB6165 648 - 648 aa - 648 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.8058+/-0.000949; mu= -3.2834+/- 0.057 mean_var=345.4716+/-70.499, 0's: 0 Z-trim(117.3): 75 B-trim: 187 in 1/51 Lambda= 0.069003 statistics sampled from 17954 (18030) to 17954 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.821), E-opt: 0.2 (0.554), width: 16 Scan time: 4.860 The best scores are: opt bits E(32554) CCDS11232.1 FOXN1 gene_id:8456|Hs108|chr17 ( 648) 4626 474.2 2.4e-133 CCDS9126.2 FOXN4 gene_id:121643|Hs108|chr12 ( 517) 784 91.7 2.7e-18 >>CCDS11232.1 FOXN1 gene_id:8456|Hs108|chr17 (648 aa) initn: 4626 init1: 4626 opt: 4626 Z-score: 2507.6 bits: 474.2 E(32554): 2.4e-133 Smith-Waterman score: 4626; 100.0% identity (100.0% similar) in 648 aa overlap (1-648:1-648) 10 20 30 40 50 60 pF1KB6 MVSLPPPQSDVTLPGPTRLEGERQGDLMQAPGLPGSPAPQSKHAGFSCSSFVSDGPPERT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MVSLPPPQSDVTLPGPTRLEGERQGDLMQAPGLPGSPAPQSKHAGFSCSSFVSDGPPERT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 PSLPPHSPRIASPGPEQVQGHCPAGPGPGPFRLSPSDKYPGFGFEEAAASSPGRFLKGSH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 PSLPPHSPRIASPGPEQVQGHCPAGPGPGPFRLSPSDKYPGFGFEEAAASSPGRFLKGSH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB6 APFHPYKRPFHEDVFPEAETTLALKGHSFKTPGPLEAFEEIPVDVAEAEAFLPGFSAEAW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 APFHPYKRPFHEDVFPEAETTLALKGHSFKTPGPLEAFEEIPVDVAEAEAFLPGFSAEAW 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB6 CNGLPYPSQEHGPQVLGSEVKVKPPVLESGAGMFCYQPPLQHMYCSSQPPFHQYSPGGGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 CNGLPYPSQEHGPQVLGSEVKVKPPVLESGAGMFCYQPPLQHMYCSSQPPFHQYSPGGGS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB6 YPIPYLGSSHYQYQRMAPQASTDGHQPLFPKPIYSYSILIFMALKNSKTGSLPVSEIYNF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 YPIPYLGSSHYQYQRMAPQASTDGHQPLFPKPIYSYSILIFMALKNSKTGSLPVSEIYNF 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB6 MTEHFPYFKTAPDGWKNSVRHNLSLNKCFEKVENKSGSSSRKGCLWALNPAKIDKMQEEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MTEHFPYFKTAPDGWKNSVRHNLSLNKCFEKVENKSGSSSRKGCLWALNPAKIDKMQEEL 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB6 QKWKRKDPIAVRKSMAKPEELDSLIGDKREKLGSPLLGCPPPGLSGSGPIRPLAPPAGLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 QKWKRKDPIAVRKSMAKPEELDSLIGDKREKLGSPLLGCPPPGLSGSGPIRPLAPPAGLS 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB6 PPLHSLHPAPGPIPGKNPLQDLLMGHTPSCYGQTYLHLSPGLAPPGPPQPLFPQPDGHLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 PPLHSLHPAPGPIPGKNPLQDLLMGHTPSCYGQTYLHLSPGLAPPGPPQPLFPQPDGHLE 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB6 LRAQPGTPQDSPLPAHTPPSHSAKLLAEPSPARTMHDTLLPDGDLGTDLDAINPSLTDFD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 LRAQPGTPQDSPLPAHTPPSHSAKLLAEPSPARTMHDTLLPDGDLGTDLDAINPSLTDFD 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB6 FQGNLWEQLKDDSLALDPLVLVTSSPTSSSMPPPQPPPHCFPPGPCLTETGSGAGDLAAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 FQGNLWEQLKDDSLALDPLVLVTSSPTSSSMPPPQPPPHCFPPGPCLTETGSGAGDLAAP 550 560 570 580 590 600 610 620 630 640 pF1KB6 GSGGSGALGDLHLTTLYSAFMELEPTPPTAPAGPSVYLSPSSKPVALA :::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 GSGGSGALGDLHLTTLYSAFMELEPTPPTAPAGPSVYLSPSSKPVALA 610 620 630 640 >>CCDS9126.2 FOXN4 gene_id:121643|Hs108|chr12 (517 aa) initn: 922 init1: 735 opt: 784 Z-score: 441.9 bits: 91.7 E(32554): 2.7e-18 Smith-Waterman score: 982; 40.8% identity (59.6% similar) in 510 aa overlap (152-647:77-516) 130 140 150 160 170 180 pF1KB6 PFHPYKRPFHEDVFPEAETTLALKGHSFKTPGPLEAFEEIPVDVAEAEAFLPGFSAEAWC :: : . .. : : .: : .. : CCDS91 SWLTAVDVPRLQQMASGRVDLGGPCVPHPHPGALAGVADLHVG-ATPSPLLHGPAGMAP- 50 60 70 80 90 100 190 200 210 220 230 pF1KB6 NGLPYPSQEHGPQVLGSEVKVKPPVL-ESGAGMFCYQPPLQHMYC-SSQPPFH-----QY :.: :: . . . :: . ..:. .:: :.: ..:: : : CCDS91 RGMP----GLGPITGHRDSMSQFPVGGQPSSGL--QDPP--HLYSPATQPQFPLPPGAQQ 110 120 130 140 150 240 250 260 270 280 290 pF1KB6 SPGGGSYPIPYLGSSHYQYQRMAPQASTDGHQPLFPKPIYSYSILIFMALKNSKTGSLPV : : : :. : ..: ..: . : .:::::::: :: ::::::::::::: CCDS91 CPPVGLYGPPFGVRPPYPQPHVAVHSSQELHPKHYPKPIYSYSCLIAMALKNSKTGSLPV 160 170 180 190 200 210 300 310 320 330 340 350 pF1KB6 SEIYNFMTEHFPYFKTAPDGWKNSVRHNLSLNKCFEKVENKSGSSSRKGCLWALNPAKID ::::.:: ::::::::::::::::::::::::::::::::: ..::::::::::: :.:: CCDS91 SEIYSFMKEHFPYFKTAPDGWKNSVRHNLSLNKCFEKVENKMSGSSRKGCLWALNLARID 220 230 240 250 260 270 360 370 380 390 400 410 pF1KB6 KMQEELQKWKRKDPIAVRKSMAKPEELDSLIGDKREKLGSPLLGCPPPGLSGSGPIRPLA ::.::..:::::: :...:::.:::::.::.:. :. : :: : : :. CCDS91 KMEEEMHKWKRKDLAAIHRSMANPEELDKLISDRPES-------CRRPGKPGE-PEAPVL 280 290 300 310 320 420 430 440 450 460 470 pF1KB6 PPAGLSPPLHSLHPAPGPIPGKNPLQDLLMGHTPSCYGQTYLHLSPGLAPPGPPQPLFPQ : :. : . .: . ::. : . .: :: . : CCDS91 THATTVAVAHGCL-AVSQLPPQ-PLMTLSLQSVP-------LHHQV-------------Q 330 340 350 360 480 490 500 510 520 pF1KB6 PDGHLELRAQPGTPQDSPLPAHTPPSHSAKLLAE---PSPA--RTMHDTLLPDGDLGTDL :..:: .: ::: ::.::: :. :. : :: :. : . . :..:.. CCDS91 PQAHL-------AP-DSPAPAQTPPLHALPDLSPSPLPHPAMGRAPVDFINISTDMNTEV 370 380 390 400 410 530 540 550 560 570 580 pF1KB6 DAINPSLTDFDFQGNLWEQLKDDSLALDPLVLVTSSPTSSSMPPPQPPPHCFPPGPCLTE ::..::. :: .::::::..::....:: : ..:: . .. CCDS91 DALDPSIMDFALQGNLWEEMKDEGFSLDTLGAFADSPLGCDL------------------ 420 430 440 450 460 590 600 610 620 630 640 pF1KB6 TGSGAGDLAAPGSGGSG-ALGDLHLTTLYSAFMELEPTPPTAPAGPSVYL-SPSSKPVAL ::. :. :.:::: .. ::..: ::.:. . . .. .. : :: . ..::.:: CCDS91 ---GASGLT-PASGGSDQSFPDLQVTGLYTAYSTPDSVAASGTSSSSQYLGAQGNKPIAL 470 480 490 500 510 pF1KB6 A CCDS91 L 648 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 04:02:41 2016 done: Mon Nov 7 04:02:42 2016 Total Scan time: 4.860 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]