Result of FASTA (omim) for
pFN21AE0434
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0434, 315 aa
1>>>pF1KE0434 315 - 315 aa - 315 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3937+/-0.00036; mu= 15.6882+/- 0.023
mean_var=67.4843+/-13.661, 0's: 0 Z-trim(114.9): 30 B-trim: 1545 in 2/51
Lambda= 0.156125
statistics sampled from 24946 (24963) to 24946 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.676), E-opt: 0.2 (0.293), width: 16
Scan time: 6.780
The best scores are: opt bits E(85289)
NP_078942 (OMIM: 148600,614888) alpha- and gamma-a ( 315) 2046 469.5 3.9e-132
NP_001258815 (OMIM: 148600,614888) alpha- and gamm ( 206) 1345 311.5 9.2e-85
NP_001258814 (OMIM: 148600,614888) alpha- and gamm ( 206) 1345 311.5 9.2e-85
XP_011520322 (OMIM: 148600,614888) PREDICTED: alph ( 206) 1345 311.5 9.2e-85
>>NP_078942 (OMIM: 148600,614888) alpha- and gamma-adapt (315 aa)
initn: 2046 init1: 2046 opt: 2046 Z-score: 2493.3 bits: 469.5 E(85289): 3.9e-132
Smith-Waterman score: 2046; 97.8% identity (98.7% similar) in 315 aa overlap (1-315:1-315)
10 20 30 40 50 60
pF1KE0 MAAGVPCALVTSCSSVFSGDQLVQHTLGTEDLIAEVTSNDAVRFYPWTIDNKYYSADINL
::::::::::::::::::::::::: :::::::.::::::::::::::::::::::::::
NP_078 MAAGVPCALVTSCSSVFSGDQLVQHILGTEDLIVEVTSNDAVRFYPWTIDNKYYSADINL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 CVVPNKFLVTAEIAESVQAFVVYFDSTRKSGLDSVSSWLPLAKAWLPEVMILVCDRVSED
:::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
NP_078 CVVPNKFLVTAEIAESVQAFVVYFDSTQKSGLDSVSSWLPLAKAWLPEVMILVCDRVSED
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 GINRQKAQEWSLKHGFELVELSPEELPEEDDDFPESTGVKRIVQALNANVWSNVVMKNDR
:::::::::: .::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 GINRQKAQEWCIKHGFELVELSPEELPEEDDDFPESTGVKRIVQALNANVWSNVVMKNDR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 NQGFSLLNSLTGTNHSIGSADPCHPEQPHLPAADSTESLSDHRGGASNTTDAQVDSIVDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 NQGFSLLNSLTGTNHSIGSADPCHPEQPHLPAADSTESLSDHRGGASNTTDAQVDSIVDP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 MLDLDIQELASLTTGGGDVENFERPFSKLKEMKDKAATLPHEQRKVHAEKVAKAFWMAIG
:::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::
NP_078 MLDLDIQELASLTTGGGDVENFERLFSKLKEMKDKAATLPHEQRKVHAEKVAKAFWMAIG
250 260 270 280 290 300
310
pF1KE0 GDRDEIEGLSSDGEH
:::::::::::: ::
NP_078 GDRDEIEGLSSDEEH
310
>>NP_001258815 (OMIM: 148600,614888) alpha- and gamma-ad (206 aa)
initn: 1345 init1: 1345 opt: 1345 Z-score: 1642.8 bits: 311.5 E(85289): 9.2e-85
Smith-Waterman score: 1345; 98.1% identity (98.5% similar) in 206 aa overlap (110-315:1-206)
80 90 100 110 120 130
pF1KE0 FVVYFDSTRKSGLDSVSSWLPLAKAWLPEVMILVCDRVSEDGINRQKAQEWSLKHGFELV
::::::::::::::::::::: .:::::::
NP_001 MILVCDRVSEDGINRQKAQEWCIKHGFELV
10 20 30
140 150 160 170 180 190
pF1KE0 ELSPEELPEEDDDFPESTGVKRIVQALNANVWSNVVMKNDRNQGFSLLNSLTGTNHSIGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELSPEELPEEDDDFPESTGVKRIVQALNANVWSNVVMKNDRNQGFSLLNSLTGTNHSIGS
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE0 ADPCHPEQPHLPAADSTESLSDHRGGASNTTDAQVDSIVDPMLDLDIQELASLTTGGGDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ADPCHPEQPHLPAADSTESLSDHRGGASNTTDAQVDSIVDPMLDLDIQELASLTTGGGDV
100 110 120 130 140 150
260 270 280 290 300 310
pF1KE0 ENFERPFSKLKEMKDKAATLPHEQRKVHAEKVAKAFWMAIGGDRDEIEGLSSDGEH
::::: ::::::::::::::::::::::::::::::::::::::::::::::: ::
NP_001 ENFERLFSKLKEMKDKAATLPHEQRKVHAEKVAKAFWMAIGGDRDEIEGLSSDEEH
160 170 180 190 200
>>NP_001258814 (OMIM: 148600,614888) alpha- and gamma-ad (206 aa)
initn: 1345 init1: 1345 opt: 1345 Z-score: 1642.8 bits: 311.5 E(85289): 9.2e-85
Smith-Waterman score: 1345; 98.1% identity (98.5% similar) in 206 aa overlap (110-315:1-206)
80 90 100 110 120 130
pF1KE0 FVVYFDSTRKSGLDSVSSWLPLAKAWLPEVMILVCDRVSEDGINRQKAQEWSLKHGFELV
::::::::::::::::::::: .:::::::
NP_001 MILVCDRVSEDGINRQKAQEWCIKHGFELV
10 20 30
140 150 160 170 180 190
pF1KE0 ELSPEELPEEDDDFPESTGVKRIVQALNANVWSNVVMKNDRNQGFSLLNSLTGTNHSIGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELSPEELPEEDDDFPESTGVKRIVQALNANVWSNVVMKNDRNQGFSLLNSLTGTNHSIGS
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE0 ADPCHPEQPHLPAADSTESLSDHRGGASNTTDAQVDSIVDPMLDLDIQELASLTTGGGDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ADPCHPEQPHLPAADSTESLSDHRGGASNTTDAQVDSIVDPMLDLDIQELASLTTGGGDV
100 110 120 130 140 150
260 270 280 290 300 310
pF1KE0 ENFERPFSKLKEMKDKAATLPHEQRKVHAEKVAKAFWMAIGGDRDEIEGLSSDGEH
::::: ::::::::::::::::::::::::::::::::::::::::::::::: ::
NP_001 ENFERLFSKLKEMKDKAATLPHEQRKVHAEKVAKAFWMAIGGDRDEIEGLSSDEEH
160 170 180 190 200
>>XP_011520322 (OMIM: 148600,614888) PREDICTED: alpha- a (206 aa)
initn: 1345 init1: 1345 opt: 1345 Z-score: 1642.8 bits: 311.5 E(85289): 9.2e-85
Smith-Waterman score: 1345; 98.1% identity (98.5% similar) in 206 aa overlap (110-315:1-206)
80 90 100 110 120 130
pF1KE0 FVVYFDSTRKSGLDSVSSWLPLAKAWLPEVMILVCDRVSEDGINRQKAQEWSLKHGFELV
::::::::::::::::::::: .:::::::
XP_011 MILVCDRVSEDGINRQKAQEWCIKHGFELV
10 20 30
140 150 160 170 180 190
pF1KE0 ELSPEELPEEDDDFPESTGVKRIVQALNANVWSNVVMKNDRNQGFSLLNSLTGTNHSIGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ELSPEELPEEDDDFPESTGVKRIVQALNANVWSNVVMKNDRNQGFSLLNSLTGTNHSIGS
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE0 ADPCHPEQPHLPAADSTESLSDHRGGASNTTDAQVDSIVDPMLDLDIQELASLTTGGGDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ADPCHPEQPHLPAADSTESLSDHRGGASNTTDAQVDSIVDPMLDLDIQELASLTTGGGDV
100 110 120 130 140 150
260 270 280 290 300 310
pF1KE0 ENFERPFSKLKEMKDKAATLPHEQRKVHAEKVAKAFWMAIGGDRDEIEGLSSDGEH
::::: ::::::::::::::::::::::::::::::::::::::::::::::: ::
XP_011 ENFERLFSKLKEMKDKAATLPHEQRKVHAEKVAKAFWMAIGGDRDEIEGLSSDEEH
160 170 180 190 200
315 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 09:21:09 2016 done: Thu Nov 3 09:21:10 2016
Total Scan time: 6.780 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]