FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1104, 161 aa 1>>>pF1KE1104 161 - 161 aa - 161 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9569+/-0.000262; mu= 14.3400+/- 0.016 mean_var=62.2924+/-12.570, 0's: 0 Z-trim(120.9): 2 B-trim: 1536 in 1/54 Lambda= 0.162501 statistics sampled from 36668 (36671) to 36668 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.809), E-opt: 0.2 (0.43), width: 16 Scan time: 6.180 The best scores are: opt bits E(85289) NP_001092691 (OMIM: 612663) TRAF-interacting prote ( 161) 1088 262.5 2.1e-70 NP_443096 (OMIM: 609028) TRAF-interacting protein ( 184) 189 51.8 6.5e-07 >>NP_001092691 (OMIM: 612663) TRAF-interacting protein w (161 aa) initn: 1088 init1: 1088 opt: 1088 Z-score: 1385.0 bits: 262.5 E(85289): 2.1e-70 Smith-Waterman score: 1088; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:1-161) 10 20 30 40 50 60 pF1KE1 MEKPLTVLRVSLYHPTLGPSAFANVPPRLQHDTSPLLLGRGQDAHLQLQLPRLSRRHLSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MEKPLTVLRVSLYHPTLGPSAFANVPPRLQHDTSPLLLGRGQDAHLQLQLPRLSRRHLSL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 EPYLEKGSALLAFCLKALSRKGCVWVNGLTLRYLEQVPLSTVNRVSFSGIQMLVRVEEGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EPYLEKGSALLAFCLKALSRKGCVWVNGLTLRYLEQVPLSTVNRVSFSGIQMLVRVEEGT 70 80 90 100 110 120 130 140 150 160 pF1KE1 SLEAFVCYFHVSPSPLIYRPEAEETDEWEGISQGQPPPGSG ::::::::::::::::::::::::::::::::::::::::: NP_001 SLEAFVCYFHVSPSPLIYRPEAEETDEWEGISQGQPPPGSG 130 140 150 160 >>NP_443096 (OMIM: 609028) TRAF-interacting protein with (184 aa) initn: 194 init1: 142 opt: 189 Z-score: 245.1 bits: 51.8 E(85289): 6.5e-07 Smith-Waterman score: 189; 30.7% identity (62.9% similar) in 140 aa overlap (2-137:10-149) 10 20 30 40 pF1KE1 MEKPLTVLRVSLYHP-TLGPSAFANVP-PRLQHDTSPLL-LGRGQDA-HLQL :. .: :....::: : . : .. : . .: .. .::... : . NP_443 MTSFEDADTEETVTCLQMTVYHPGQLQCGIFQSISFNREKLPSSEVVKFGRNSNICHYTF 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE1 QLPRLSRRHLSLEPYLEKGSALLAFCLKALSRKGCVWVNGLTLRYLEQVPLSTVNRVSFS : ..:: ..::. . . .:..:.: .: .:.: . :.. : ::... : : :. NP_443 QDKQVSRVQFSLQLFKKFNSSVLSFEIKNMSKKTNLIVDSRELGYLNKMDLPYRCMVRFG 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE1 GIQMLVRVEEGTSLEAFVCYFHVSPSPLIYRPEAEETDEWEGISQGQPPPGSG :.:.. :.: ::: : : .:: :. NP_443 EYQFLMEKEDGESLEFFETQFILSPRSLLQENNWPPHRPIPEYGTYSLCSSQSSSPTEMD 130 140 150 160 170 180 161 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 04:03:17 2016 done: Mon Nov 7 04:03:18 2016 Total Scan time: 6.180 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]