Result of FASTA (omim) for
pFN21AB6461
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6461, 321 aa
1>>>pF1KB6461 321 - 321 aa - 321 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4825+/-0.000321; mu= 12.0393+/- 0.020
mean_var=130.6867+/-25.083, 0's: 0 Z-trim(120.0): 277 B-trim: 135 in 2/50
Lambda= 0.112191
statistics sampled from 34498 (34801) to 34498 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.77), E-opt: 0.2 (0.408), width: 16
Scan time: 8.570
The best scores are: opt bits E(85289)
XP_005272519 (OMIM: 151445) PREDICTED: low affinit ( 321) 2221 370.3 3.1e-102
NP_001993 (OMIM: 151445) low affinity immunoglobul ( 321) 2221 370.3 3.1e-102
NP_001207429 (OMIM: 151445) low affinity immunoglo ( 321) 2221 370.3 3.1e-102
NP_001193948 (OMIM: 151445) low affinity immunoglo ( 320) 2174 362.7 5.9e-100
NP_001231785 (OMIM: 616256) C-type lectin domain f ( 281) 438 81.6 2.1e-15
NP_940894 (OMIM: 616256) C-type lectin domain fami ( 293) 438 81.6 2.1e-15
NP_001138379 (OMIM: 605872) C-type lectin domain f ( 332) 402 75.9 1.3e-13
NP_001138378 (OMIM: 605872) C-type lectin domain f ( 263) 399 75.3 1.6e-13
NP_001138381 (OMIM: 605872) C-type lectin domain f ( 353) 388 73.6 6.7e-13
XP_006722677 (OMIM: 605872) PREDICTED: C-type lect ( 343) 381 72.5 1.4e-12
NP_001138376 (OMIM: 605872) C-type lectin domain f ( 348) 381 72.5 1.5e-12
XP_006722675 (OMIM: 605872) PREDICTED: C-type lect ( 371) 381 72.5 1.5e-12
XP_006722676 (OMIM: 605872) PREDICTED: C-type lect ( 371) 381 72.5 1.5e-12
NP_001138377 (OMIM: 605872) C-type lectin domain f ( 375) 381 72.5 1.5e-12
NP_001138382 (OMIM: 605872) C-type lectin domain f ( 376) 381 72.5 1.5e-12
NP_001316999 (OMIM: 605999) C-type lectin domain f ( 289) 379 72.1 1.6e-12
XP_006721587 (OMIM: 108361) PREDICTED: asialoglyco ( 248) 378 71.9 1.6e-12
NP_550436 (OMIM: 108361) asialoglycoprotein recept ( 292) 379 72.1 1.6e-12
XP_006722674 (OMIM: 605872) PREDICTED: C-type lect ( 398) 381 72.5 1.6e-12
NP_055072 (OMIM: 605872) C-type lectin domain fami ( 399) 381 72.5 1.6e-12
NP_550434 (OMIM: 108361) asialoglycoprotein recept ( 311) 379 72.1 1.7e-12
NP_001172 (OMIM: 108361) asialoglycoprotein recept ( 311) 379 72.1 1.7e-12
XP_016882280 (OMIM: 616838) PREDICTED: C-type lect ( 243) 377 71.7 1.8e-12
XP_016880140 (OMIM: 108361) PREDICTED: asialoglyco ( 292) 377 71.8 2e-12
XP_016882279 (OMIM: 616838) PREDICTED: C-type lect ( 293) 377 71.8 2e-12
XP_016882277 (OMIM: 616838) PREDICTED: C-type lect ( 310) 377 71.8 2.1e-12
XP_016882274 (OMIM: 616838) PREDICTED: C-type lect ( 310) 377 71.8 2.1e-12
XP_016882275 (OMIM: 616838) PREDICTED: C-type lect ( 310) 377 71.8 2.1e-12
XP_016882276 (OMIM: 616838) PREDICTED: C-type lect ( 310) 377 71.8 2.1e-12
XP_016882278 (OMIM: 616838) PREDICTED: C-type lect ( 310) 377 71.8 2.1e-12
XP_016880141 (OMIM: 108361) PREDICTED: asialoglyco ( 311) 377 71.8 2.1e-12
XP_016880142 (OMIM: 108361) PREDICTED: asialoglyco ( 311) 377 71.8 2.1e-12
NP_006335 (OMIM: 605999) C-type lectin domain fami ( 292) 376 71.6 2.2e-12
NP_001138365 (OMIM: 604672,607948,609423,614371) C ( 268) 375 71.4 2.4e-12
NP_001191047 (OMIM: 616838) C-type lectin domain f ( 378) 377 71.9 2.4e-12
XP_006721589 (OMIM: 108361) PREDICTED: asialoglyco ( 287) 367 70.1 6.1e-12
NP_550435 (OMIM: 108361) asialoglycoprotein recept ( 287) 367 70.1 6.1e-12
XP_005256705 (OMIM: 108361) PREDICTED: asialoglyco ( 287) 367 70.1 6.1e-12
NP_001188281 (OMIM: 108361) asialoglycoprotein rec ( 306) 367 70.2 6.4e-12
NP_001138367 (OMIM: 604672,607948,609423,614371) C ( 312) 367 70.2 6.5e-12
XP_011522168 (OMIM: 108361) PREDICTED: asialoglyco ( 299) 365 69.8 7.8e-12
XP_011522165 (OMIM: 108361) PREDICTED: asialoglyco ( 299) 365 69.8 7.8e-12
XP_011522167 (OMIM: 108361) PREDICTED: asialoglyco ( 299) 365 69.8 7.8e-12
XP_011522166 (OMIM: 108361) PREDICTED: asialoglyco ( 318) 365 69.8 8.2e-12
NP_001184145 (OMIM: 108360) asialoglycoprotein rec ( 252) 363 69.4 8.7e-12
NP_001662 (OMIM: 108360) asialoglycoprotein recept ( 291) 363 69.5 9.6e-12
XP_011522163 (OMIM: 108360) PREDICTED: asialoglyco ( 291) 363 69.5 9.6e-12
XP_011522164 (OMIM: 108361) PREDICTED: asialoglyco ( 410) 365 69.9 9.9e-12
XP_005272529 (OMIM: 604672,607948,609423,614371) P ( 266) 355 68.2 2.2e-11
NP_001138366 (OMIM: 604672,607948,609423,614371) C ( 360) 351 67.6 4.3e-11
>>XP_005272519 (OMIM: 151445) PREDICTED: low affinity im (321 aa)
initn: 2221 init1: 2221 opt: 2221 Z-score: 1956.6 bits: 370.3 E(85289): 3.1e-102
Smith-Waterman score: 2221; 99.7% identity (100.0% similar) in 321 aa overlap (1-321:1-321)
10 20 30 40 50 60
pF1KB6 MEEGQYSEIEELPRRRCCRRGTQIVLLGLVTAALWAGLLTLLLLWHWDTTQSLKQLEERA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MEEGQYSEIEELPRRRCCRRGTQIVLLGLVTAALWAGLLTLLLLWHWDTTQSLKQLEERA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ARNVSQVSKNLESHHGDQMAQKSQSTQISQELEELRAEQQRLKSQDLELSWNLNGLQADL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ARNVSQVSKNLESHHGDQMAQKSQSTQISQELEELRAEQQRLKSQDLELSWNLNGLQADL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SSFKSQELNERNEASDLLERLREEVTKLRMELQVSSGFVCNTCPEKWINFQRKCYYFGKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SSFKSQELNERNEASDLLERLREEVTKLRMELQVSSGFVCNTCPEKWINFQRKCYYFGKG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 TKQWVHARYACDDMEGQLVSIHSPEEQDFLTKHASHTGSWIGLRNLDLKGEFIWVDGSHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TKQWVHARYACDDMEGQLVSIHSPEEQDFLTKHASHTGSWIGLRNLDLKGEFIWVDGSHV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 DYSNWAPGEPTSRSQGEDCVMMRGSGRWNDAFCDRKLGAWVCDQLATCTPPASEGSAESM
:::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::
XP_005 DYSNWAPGEPTSRSQGEDCVMMRGSGRWNDAFCDRKLGAWVCDRLATCTPPASEGSAESM
250 260 270 280 290 300
310 320
pF1KB6 GPDSRPDPDGRLPTPSAPLHS
:::::::::::::::::::::
XP_005 GPDSRPDPDGRLPTPSAPLHS
310 320
>>NP_001993 (OMIM: 151445) low affinity immunoglobulin e (321 aa)
initn: 2221 init1: 2221 opt: 2221 Z-score: 1956.6 bits: 370.3 E(85289): 3.1e-102
Smith-Waterman score: 2221; 99.7% identity (100.0% similar) in 321 aa overlap (1-321:1-321)
10 20 30 40 50 60
pF1KB6 MEEGQYSEIEELPRRRCCRRGTQIVLLGLVTAALWAGLLTLLLLWHWDTTQSLKQLEERA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEEGQYSEIEELPRRRCCRRGTQIVLLGLVTAALWAGLLTLLLLWHWDTTQSLKQLEERA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ARNVSQVSKNLESHHGDQMAQKSQSTQISQELEELRAEQQRLKSQDLELSWNLNGLQADL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ARNVSQVSKNLESHHGDQMAQKSQSTQISQELEELRAEQQRLKSQDLELSWNLNGLQADL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SSFKSQELNERNEASDLLERLREEVTKLRMELQVSSGFVCNTCPEKWINFQRKCYYFGKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSFKSQELNERNEASDLLERLREEVTKLRMELQVSSGFVCNTCPEKWINFQRKCYYFGKG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 TKQWVHARYACDDMEGQLVSIHSPEEQDFLTKHASHTGSWIGLRNLDLKGEFIWVDGSHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TKQWVHARYACDDMEGQLVSIHSPEEQDFLTKHASHTGSWIGLRNLDLKGEFIWVDGSHV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 DYSNWAPGEPTSRSQGEDCVMMRGSGRWNDAFCDRKLGAWVCDQLATCTPPASEGSAESM
:::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::
NP_001 DYSNWAPGEPTSRSQGEDCVMMRGSGRWNDAFCDRKLGAWVCDRLATCTPPASEGSAESM
250 260 270 280 290 300
310 320
pF1KB6 GPDSRPDPDGRLPTPSAPLHS
:::::::::::::::::::::
NP_001 GPDSRPDPDGRLPTPSAPLHS
310 320
>>NP_001207429 (OMIM: 151445) low affinity immunoglobuli (321 aa)
initn: 2221 init1: 2221 opt: 2221 Z-score: 1956.6 bits: 370.3 E(85289): 3.1e-102
Smith-Waterman score: 2221; 99.7% identity (100.0% similar) in 321 aa overlap (1-321:1-321)
10 20 30 40 50 60
pF1KB6 MEEGQYSEIEELPRRRCCRRGTQIVLLGLVTAALWAGLLTLLLLWHWDTTQSLKQLEERA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEEGQYSEIEELPRRRCCRRGTQIVLLGLVTAALWAGLLTLLLLWHWDTTQSLKQLEERA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ARNVSQVSKNLESHHGDQMAQKSQSTQISQELEELRAEQQRLKSQDLELSWNLNGLQADL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ARNVSQVSKNLESHHGDQMAQKSQSTQISQELEELRAEQQRLKSQDLELSWNLNGLQADL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SSFKSQELNERNEASDLLERLREEVTKLRMELQVSSGFVCNTCPEKWINFQRKCYYFGKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSFKSQELNERNEASDLLERLREEVTKLRMELQVSSGFVCNTCPEKWINFQRKCYYFGKG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 TKQWVHARYACDDMEGQLVSIHSPEEQDFLTKHASHTGSWIGLRNLDLKGEFIWVDGSHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TKQWVHARYACDDMEGQLVSIHSPEEQDFLTKHASHTGSWIGLRNLDLKGEFIWVDGSHV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 DYSNWAPGEPTSRSQGEDCVMMRGSGRWNDAFCDRKLGAWVCDQLATCTPPASEGSAESM
:::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::
NP_001 DYSNWAPGEPTSRSQGEDCVMMRGSGRWNDAFCDRKLGAWVCDRLATCTPPASEGSAESM
250 260 270 280 290 300
310 320
pF1KB6 GPDSRPDPDGRLPTPSAPLHS
:::::::::::::::::::::
NP_001 GPDSRPDPDGRLPTPSAPLHS
310 320
>>NP_001193948 (OMIM: 151445) low affinity immunoglobuli (320 aa)
initn: 2174 init1: 2174 opt: 2174 Z-score: 1915.5 bits: 362.7 E(85289): 5.9e-100
Smith-Waterman score: 2174; 99.7% identity (100.0% similar) in 314 aa overlap (8-321:7-320)
10 20 30 40 50 60
pF1KB6 MEEGQYSEIEELPRRRCCRRGTQIVLLGLVTAALWAGLLTLLLLWHWDTTQSLKQLEERA
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNPPSQEIEELPRRRCCRRGTQIVLLGLVTAALWAGLLTLLLLWHWDTTQSLKQLEERA
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 ARNVSQVSKNLESHHGDQMAQKSQSTQISQELEELRAEQQRLKSQDLELSWNLNGLQADL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ARNVSQVSKNLESHHGDQMAQKSQSTQISQELEELRAEQQRLKSQDLELSWNLNGLQADL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 SSFKSQELNERNEASDLLERLREEVTKLRMELQVSSGFVCNTCPEKWINFQRKCYYFGKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSFKSQELNERNEASDLLERLREEVTKLRMELQVSSGFVCNTCPEKWINFQRKCYYFGKG
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB6 TKQWVHARYACDDMEGQLVSIHSPEEQDFLTKHASHTGSWIGLRNLDLKGEFIWVDGSHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TKQWVHARYACDDMEGQLVSIHSPEEQDFLTKHASHTGSWIGLRNLDLKGEFIWVDGSHV
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB6 DYSNWAPGEPTSRSQGEDCVMMRGSGRWNDAFCDRKLGAWVCDQLATCTPPASEGSAESM
:::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::
NP_001 DYSNWAPGEPTSRSQGEDCVMMRGSGRWNDAFCDRKLGAWVCDRLATCTPPASEGSAESM
240 250 260 270 280 290
310 320
pF1KB6 GPDSRPDPDGRLPTPSAPLHS
:::::::::::::::::::::
NP_001 GPDSRPDPDGRLPTPSAPLHS
300 310 320
>>NP_001231785 (OMIM: 616256) C-type lectin domain famil (281 aa)
initn: 448 init1: 196 opt: 438 Z-score: 397.6 bits: 81.6 E(85289): 2.1e-15
Smith-Waterman score: 438; 29.7% identity (56.8% similar) in 273 aa overlap (19-288:17-281)
10 20 30 40 50 60
pF1KB6 MEEGQYSEIEELPRRRCCRRGTQIVLLGLVTAALWAGLLTLLLLWHWDTTQSLKQLEERA
:: ..: :::..::: .:..:: .: . ..
NP_001 MDTTRYRPWGRWVHWSRRPLFLALAVLVTTVLWAVILSILLSKASTERAALLDGHDLL
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 ARNVSQVSKNLESHHGDQMAQKSQSTQISQELEELRAEQQRLKSQDLELSWNLNGLQADL
:.:. . : . . . .: . . .:. ::: . ... .: : :. .
NP_001 RTNASKQTAALGALKEEVGDCHSCCSGTQAQLQTTRAELGEAQAKLMEQESALRELRERV
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 SSFKSQELNERNEASDLLERLREEVTKLRMELQVSSGFVCNTCPEKWINFQRKCYYFGKG
.. .. :... : : : : .:: .: :. :: .:..:. .::.:.
NP_001 TQGLAEAGRGREDVRTELFRALEAV-----RLQNNS---CEPCPTSWLSFEGSCYFFSVP
120 130 140 150 160 170
190 200 210 220 230
pF1KB6 TKQWVHARYACDDMEGQLVSIHSPEEQDFLTKHASHTGSWIGLRNLDLKGE---FIWVDG
:. :. : : ..:: . . .:: :::... : :.::: . :. . ::::
NP_001 KTTWAAAQDHCADASAHLVIVGGLDEQGFLTRNTRGRGYWLGLRAVRHLGKVQGYQWVDG
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB6 SHVDYSNWAPGEPTSRSQGEDCVMMRGSGRWNDAFCDRKLGAWVCDQLATCTPPASEGSA
...:.: :::.. :.:::: .: :::: :: . .:.:.. .:
NP_001 VSLSFSHWNQGEPNDAWGRENCVMMLHTGLWNDAPCDSEKDGWICEKRHNC
240 250 260 270 280
300 310 320
pF1KB6 ESMGPDSRPDPDGRLPTPSAPLHS
>>NP_940894 (OMIM: 616256) C-type lectin domain family 4 (293 aa)
initn: 448 init1: 196 opt: 438 Z-score: 397.4 bits: 81.6 E(85289): 2.1e-15
Smith-Waterman score: 438; 29.7% identity (56.8% similar) in 273 aa overlap (19-288:29-293)
10 20 30 40 50
pF1KB6 MEEGQYSEIEELPRRRCCRRGTQIVLLGLVTAALWAGLLTLLLLWHWDTT
:: ..: :::..::: .:..::
NP_940 MDTTRYSKWGGSSEEVPGGPWGRWVHWSRRPLFLALAVLVTTVLWAVILSILLSKASTER
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 QSLKQLEERAARNVSQVSKNLESHHGDQMAQKSQSTQISQELEELRAEQQRLKSQDLELS
.: . .. :.:. . : . . . .: . . .:. ::: . ... .:
NP_940 AALLDGHDLLRTNASKQTAALGALKEEVGDCHSCCSGTQAQLQTTRAELGEAQAKLMEQE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 WNLNGLQADLSSFKSQELNERNEASDLLERLREEVTKLRMELQVSSGFVCNTCPEKWINF
: :. ... .. :... : : : : .:: .: :. :: .:..:
NP_940 SALRELRERVTQGLAEAGRGREDVRTELFRALEAV-----RLQNNS---CEPCPTSWLSF
130 140 150 160 170
180 190 200 210 220 230
pF1KB6 QRKCYYFGKGTKQWVHARYACDDMEGQLVSIHSPEEQDFLTKHASHTGSWIGLRNLDLKG
. .::.:. :. :. : : ..:: . . .:: :::... : :.::: . :
NP_940 EGSCYFFSVPKTTWAAAQDHCADASAHLVIVGGLDEQGFLTRNTRGRGYWLGLRAVRHLG
180 190 200 210 220 230
240 250 260 270 280
pF1KB6 E---FIWVDGSHVDYSNWAPGEPTSRSQGEDCVMMRGSGRWNDAFCDRKLGAWVCDQLAT
. . :::: ...:.: :::.. :.:::: .: :::: :: . .:.:.. .
NP_940 KVQGYQWVDGVSLSFSHWNQGEPNDAWGRENCVMMLHTGLWNDAPCDSEKDGWICEKRHN
240 250 260 270 280 290
290 300 310 320
pF1KB6 CTPPASEGSAESMGPDSRPDPDGRLPTPSAPLHS
:
NP_940 C
>>NP_001138379 (OMIM: 605872) C-type lectin domain famil (332 aa)
initn: 347 init1: 169 opt: 402 Z-score: 365.2 bits: 75.9 E(85289): 1.3e-13
Smith-Waterman score: 422; 33.3% identity (63.9% similar) in 249 aa overlap (57-288:84-328)
30 40 50 60 70 80
pF1KB6 LGLVTAALWAGLLTLLLLWHWDTTQSLKQLEERAARNVSQVSKNLESHHGDQMAQKSQST
:. ... : .:.. :. . .::.
NP_001 VPSSLSQEQSEQDAIYQNLTQLKAAVGELSEKSKLQEIYQELTQLKAAVGE-LPEKSKLQ
60 70 80 90 100 110
90 100 110 120 130
pF1KB6 QISQELEELRAEQQRL--KSQDLELSWNLNGLQADLSSF--KS------QELNERNEA-S
.: ::: .:.: .: ::. :. .:. :.: .. . :: :::.: . : .
NP_001 EIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAVG
120 130 140 150 160 170
140 150 160 170 180 190
pF1KB6 DLLERLR-EEVTKLRMELQVSSGFVCNTCPEKWINFQRKCYYFGKGTKQWVHARYACDDM
.: :. . .:. . .:... .: ::. : :: .::..... ..: . ::...
NP_001 ELPEKSKLQEIYQELTQLKAAVERLCRHCPKDWTFFQGNCYFMSNSQRNWHDSVTACQEV
180 190 200 210 220 230
200 210 220 230 240
pF1KB6 EGQLVSIHSPEEQDFLTKHASHTG--SWIGLRNLDLKGEFIWVDGSHVDYS---NWAPGE
..::: :.. :::.:: ..:... ::.:: .:. .: . ::::: .. : : ::
NP_001 RAQLVVIKTAEEQNFLQLQTSRSNRFSWMGLSDLNQEGTWQWVDGSPLSPSFQRYWNSGE
240 250 260 270 280 290
250 260 270 280 290 300
pF1KB6 PTSRSQGEDCVMMRGSGRWNDAFCDRKLGAWVCDQLATCTPPASEGSAESMGPDSRPDPD
:.. : .:::. . ::: ::: :: . :.: . :.:
NP_001 PNN-SGNEDCAEFSGSG-WNDNRCDVD-NYWICKKPAACFRDE
300 310 320 330
310 320
pF1KB6 GRLPTPSAPLHS
>>NP_001138378 (OMIM: 605872) C-type lectin domain famil (263 aa)
initn: 343 init1: 169 opt: 399 Z-score: 363.9 bits: 75.3 E(85289): 1.6e-13
Smith-Waterman score: 412; 33.0% identity (66.1% similar) in 230 aa overlap (64-288:51-259)
40 50 60 70 80 90
pF1KB6 LWAGLLTLLLLWHWDTTQSLKQLEERAARNVSQVSKNLESHHGDQMAQKSQSTQISQELE
::.: ..: .....: : .. ::.. .
NP_001 TSGIRLFPRDFQFQQIHGHKSSTVPFLLGPVSKVPSSLSQEQSEQDAIYQNLTQLKAAVG
30 40 50 60 70 80
100 110 120 130 140 150
pF1KB6 ELRAEQQRLKSQDLELSWNLNGLQADLSSFKSQELNERNEASDLLERLREEVTKLRMELQ
:: .:...:. :. .:. :.: .. :: :... :... .:.:.:. ..
NP_001 EL-SEKSKLQ----EIYQELTQLKAAVG-----ELPEKSK----LQEIYQELTRLKAAVE
90 100 110 120
160 170 180 190 200 210
pF1KB6 VSSGFVCNTCPEKWINFQRKCYYFGKGTKQWVHARYACDDMEGQLVSIHSPEEQDFLTKH
.: ::. : :: .::..... ..: . ::.....::: :.. :::.:: .
NP_001 R----LCRHCPKDWTFFQGNCYFMSNSQRNWHDSVTACQEVRAQLVVIKTAEEQNFLQLQ
130 140 150 160 170 180
220 230 240 250 260
pF1KB6 ASHTG--SWIGLRNLDLKGEFIWVDGSHVDYS---NWAPGEPTSRSQGEDCVMMRGSGRW
.:... ::.:: .:. .: . ::::: .. : : :::.. : .:::. . ::: :
NP_001 TSRSNRFSWMGLSDLNQEGTWQWVDGSPLSPSFQRYWNSGEPNN-SGNEDCAEFSGSG-W
190 200 210 220 230 240
270 280 290 300 310 320
pF1KB6 NDAFCDRKLGAWVCDQLATCTPPASEGSAESMGPDSRPDPDGRLPTPSAPLHS
:: :: . :.: . :.:
NP_001 NDNRCDVD-NYWICKKPAACFRDE
250 260
>>NP_001138381 (OMIM: 605872) C-type lectin domain famil (353 aa)
initn: 335 init1: 169 opt: 388 Z-score: 352.6 bits: 73.6 E(85289): 6.7e-13
Smith-Waterman score: 421; 30.9% identity (60.2% similar) in 324 aa overlap (5-288:32-349)
10 20 30
pF1KB6 MEEGQYSEIEELPRRRCCRRGTQIVLLGLVTAAL
:...:. : : ..: :.. :
NP_001 SDSKEPRVQQLGLLEEDPTTSGIRLFPRDFQFQQIHGHKSSTGCL-GHGALVLQLLSFML
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB6 WAGLLTLLLLWHWDTTQSLKQLEERAARNVSQVSKNLESHHGDQMAQKSQSTQISQELEE
::.:. .:. . .::.: :. . : .:.. :. ...::. .: ::: .
NP_001 LAGVLVAILVQVSKVPSSLSQ-EQSEQDAIYQNLTQLKAAVGE-LSEKSKLQEIYQELTQ
70 80 90 100 110
100 110 120 130
pF1KB6 LRAEQQRL--KSQDLELSWNLNGLQADLSSF--KS------QELNERNEA-SDL-----L
:.: .: ::. :. .:. :.: .. . :: :::.. . : ..: :
NP_001 LKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKL
120 130 140 150 160 170
140 150 160 170
pF1KB6 ERLREEVTKLR----------------MEL-QVSSGF--VCNTCPEKWINFQRKCYYFGK
... .:.:.:. .:: .....: .: ::. : :: .::....
NP_001 QEIYQELTQLKAAVGELPDQSKQQQIYQELTDLKTAFERLCRHCPKDWTFFQGNCYFMSN
180 190 200 210 220 230
180 190 200 210 220 230
pF1KB6 GTKQWVHARYACDDMEGQLVSIHSPEEQDFLTKHASHTG--SWIGLRNLDLKGEFIWVDG
. ..: . ::.....::: :.. :::.:: ..:... ::.:: .:. .: . ::::
NP_001 SQRNWHDSVTACQEVRAQLVVIKTAEEQNFLQLQTSRSNRFSWMGLSDLNQEGTWQWVDG
240 250 260 270 280 290
240 250 260 270 280 290
pF1KB6 SHVDYS---NWAPGEPTSRSQGEDCVMMRGSGRWNDAFCDRKLGAWVCDQLATCTPPASE
: .. : : :::.. : .:::. . ::: ::: :: . :.: . :.:
NP_001 SPLSPSFQRYWNSGEPNN-SGNEDCAEFSGSG-WNDNRCDVD-NYWICKKPAACFRDE
300 310 320 330 340 350
300 310 320
pF1KB6 GSAESMGPDSRPDPDGRLPTPSAPLHS
>>XP_006722677 (OMIM: 605872) PREDICTED: C-type lectin d (343 aa)
initn: 347 init1: 169 opt: 381 Z-score: 346.6 bits: 72.5 E(85289): 1.4e-12
Smith-Waterman score: 413; 32.6% identity (62.8% similar) in 239 aa overlap (57-288:118-339)
30 40 50 60 70 80
pF1KB6 LGLVTAALWAGLLTLLLLWHWDTTQSLKQLEERAARNVSQVSKNLESHHGDQMAQKSQST
:. ... : :.. :. . .::.
XP_006 AAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGE-LPEKSKLQ
90 100 110 120 130 140
90 100 110 120 130 140
pF1KB6 QISQELEELRAEQQRL--KSQDLELSWNLNGLQADLSSFKSQELNERNEASDLLERLREE
.: ::: ::.: .: ::. :. .:. :.: .. :: .... ... .:
XP_006 EIYQELTELKAAVGELPEKSKLQEIYQELTQLKAAVG-----ELPDQSKQ----QQIYQE
150 160 170 180 190
150 160 170 180 190 200
pF1KB6 VTKLRMELQVSSGFVCNTCPEKWINFQRKCYYFGKGTKQWVHARYACDDMEGQLVSIHSP
.: :. .. .: ::. : :: .::..... ..: . ::.....::: :..
XP_006 LTDLKTAFE----RLCRHCPKDWTFFQGNCYFMSNSQRNWHDSVTACQEVRAQLVVIKTA
200 210 220 230 240 250
210 220 230 240 250
pF1KB6 EEQDFLTKHASHTG--SWIGLRNLDLKGEFIWVDGSHVDYS---NWAPGEPTSRSQGEDC
:::.:: ..:... ::.:: .:. .: . ::::: .. : : :::.. : .:::
XP_006 EEQNFLQLQTSRSNRFSWMGLSDLNQEGTWQWVDGSPLSPSFQRYWNSGEPNN-SGNEDC
260 270 280 290 300 310
260 270 280 290 300 310
pF1KB6 VMMRGSGRWNDAFCDRKLGAWVCDQLATCTPPASEGSAESMGPDSRPDPDGRLPTPSAPL
. . ::: ::: :: . :.: . :.:
XP_006 AEFSGSG-WNDNRCDVD-NYWICKKPAACFRDE
320 330 340
321 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 01:13:59 2016 done: Sat Nov 5 01:14:00 2016
Total Scan time: 8.570 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]