FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8635, 241 aa
  1>>>pF1KB8635 241 - 241 aa - 241 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2669+/-0.00068; mu= 7.9125+/- 0.041
 mean_var=154.1845+/-31.276, 0's: 0 Z-trim(116.6): 3  B-trim: 185 in 1/50
 Lambda= 0.103289
 statistics sampled from 17210 (17212) to 17210 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.831), E-opt: 0.2 (0.529), width:  16
 Scan time:  2.810

The best scores are:                                      opt bits E(32554)
CCDS10187.2 FBXL22 gene_id:283807|Hs108|chr15      ( 247) 1678 260.5 7.3e-70


>>CCDS10187.2 FBXL22 gene_id:283807|Hs108|chr15           (247 aa)
 initn: 1678 init1: 1678 opt: 1678  Z-score: 1367.7  bits: 260.5 E(32554): 7.3e-70
Smith-Waterman score: 1678; 99.6% identity (99.6% similar) in 241 aa overlap (1-241:7-247)

                     10        20        30        40        50    
pF1KB8       MHITQLNRECLLHLFSFLDKDSRKSLARTCSQLHDVFEDPALWSLLHFRSLTEL
             ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MWPLLTMHITQLNRECLLHLFSFLDKDSRKSLARTCSQLHDVFEDPALWSLLHFRSLTEL
               10        20        30        40        50        60

           60        70        80        90       100       110    
pF1KB8 QKDNFLLGPALRSLSICWHSSRVQVCSIEDWLKSAFQRSICSRHESLVNDFLLRVCDRLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QKDNFLLGPALRSLSICWHSSRVQVCSIEDWLKSAFQRSICSRHESLVNDFLLRVCDRLS
               70        80        90       100       110       120

          120       130       140       150       160       170    
pF1KB8 AVRSPRRREAPAPSSGTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AVRSPRRREAPAPSSGTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAE
              130       140       150       160       170       180

          180       190       200       210       220       230    
pF1KB8 RPSETPPAPGVSWGPPPPGALVVISVKQEEGKQGRTGRRSHRAAPPCGFARTRVCPPTFP
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
CCDS10 RPSETPPAPGVSWGPPPPGAPVVISVKQEEGKQGRTGRRSHRAAPPCGFARTRVCPPTFP
              190       200       210       220       230       240

          240 
pF1KB8 GADAFPQ
       :::::::
CCDS10 GADAFPQ
              




241 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 21:44:01 2016 done: Sat Nov  5 21:44:02 2016
 Total Scan time:  2.810 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]