FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB9715, 392 aa 1>>>pF1KB9715 392 - 392 aa - 392 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 11.6417+/-0.000423; mu= -6.3236+/- 0.027 mean_var=579.3323+/-118.381, 0's: 0 Z-trim(126.3): 32 B-trim: 1016 in 1/61 Lambda= 0.053286 statistics sampled from 51953 (52018) to 51953 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.84), E-opt: 0.2 (0.61), width: 16 Scan time: 10.180 The best scores are: opt bits E(85289) NP_001417 (OMIM: 131290) homeobox protein engraile ( 392) 2686 220.4 5.9e-57 NP_001418 (OMIM: 131310) homeobox protein engraile ( 333) 774 73.3 9.4e-13 >>NP_001417 (OMIM: 131290) homeobox protein engrailed-1 (392 aa) initn: 2686 init1: 2686 opt: 2686 Z-score: 1143.5 bits: 220.4 E(85289): 5.9e-57 Smith-Waterman score: 2686; 100.0% identity (100.0% similar) in 392 aa overlap (1-392:1-392) 10 20 30 40 50 60 pF1KB9 MEEQQPEPKSQRDSALGAAAAATPGGLSLSLSPGASGSSGSGSDGDSVPVSPQPAPPSPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MEEQQPEPKSQRDSALGAAAAATPGGLSLSLSPGASGSSGSGSDGDSVPVSPQPAPPSPP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 AAPCLPPLAHHPHLPPHPPPPPPQHLAAPAHQPQPAAQLHRTTNFFIDNILRPDFGCKKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AAPCLPPLAHHPHLPPHPPPPPPQHLAAPAHQPQPAAQLHRTTNFFIDNILRPDFGCKKE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 QPPPQLLVAAAARGGAGGGGRVERDRGQTAAGRDPVHPLGTRAPGAASLLCAPDANCGPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QPPPQLLVAAAARGGAGGGGRVERDRGQTAAGRDPVHPLGTRAPGAASLLCAPDANCGPP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 DGSQPAAAGAGASKAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGGGAGSPGAQGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DGSQPAAAGAGASKAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGGGAGSPGAQGT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 KYPEHGNPAILLMGSANGGPVVKTDSQQPLVWPAWVYCTRYSDRPSSGPRTRKLKKKKNE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KYPEHGNPAILLMGSANGGPVVKTDSQQPLVWPAWVYCTRYSDRPSSGPRTRKLKKKKNE 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB9 KEDKRPRTAFTAEQLQRLKAEFQANRYITEQRRQTLAQELSLNESQIKIWFQNKRAKIKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KEDKRPRTAFTAEQLQRLKAEFQANRYITEQRRQTLAQELSLNESQIKIWFQNKRAKIKK 310 320 330 340 350 360 370 380 390 pF1KB9 ATGIKNGLALHLMAQGLYNHSTTTVQDKDESE :::::::::::::::::::::::::::::::: NP_001 ATGIKNGLALHLMAQGLYNHSTTTVQDKDESE 370 380 390 >>NP_001418 (OMIM: 131310) homeobox protein engrailed-2 (333 aa) initn: 897 init1: 740 opt: 774 Z-score: 350.0 bits: 73.3 E(85289): 9.4e-13 Smith-Waterman score: 919; 47.1% identity (62.3% similar) in 395 aa overlap (1-392:1-333) 10 20 30 40 50 60 pF1KB9 MEEQQPEPKSQRDSALGAAAAATPGGLSLSLSPGASGSSGSGSDGDSVPVSPQPAPPSPP :::..:.: : ::::. : . :::. :::. : : :: : . NP_001 MEENDPKP--------GEAAAAVEGQRQPESSPGG----GSGGGGGS---SPGEADTGRR 10 20 30 40 70 80 90 100 110 120 pF1KB9 AAPCLPPLAHHPHLPPHPPPPPPQHLAAPAHQPQPAAQLHRTTNFFIDNILRPDFGCKKE : :: . : ::... .: :: :::::::::::.:: .:. NP_001 RALMLPAV-----------------LQAPGNHQHP----HRITNFFIDNILRPEFGRRKD 50 60 70 80 130 140 150 160 170 pF1KB9 QPPPQLLVAAAARGGAGG-GGRVERDRGQTAAGRDPVHPLGTRAPGAASLLCAPDANCGP .... ::::: :: . : :.: . . :.: : . ::: :. :: NP_001 AGTCCAGAGGGRGGGAGGEGGASGAEGGGGAGGSEQLLGSGSREP-RQNPPCAPGAG-GP 90 100 110 120 130 140 180 190 200 210 220 230 pF1KB9 -PD-GSQPAAAGAGASKAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGGGAGSPGA : ::. . : :.::. : ::. .:: :.: NP_001 LPAAGSDSPGDGEGGSKTL------------------------SLHGGAKKGGDPGGPLD 150 160 170 240 250 260 270 280 290 pF1KB9 QGTKYPEHGNPAILLMGSANGGPVVKTDSQQPLVWPAWVYCTRYSDRPSSGPRTRKLKKK . : :. . . ...... . . . ::..:::::::::::::::::::.:: ::: NP_001 GSLKARGLGGGDLSVSSDSDSSQAGANLGAQPMLWPAWVYCTRYSDRPSSGPRSRKPKKK 180 190 200 210 220 230 300 310 320 330 340 350 pF1KB9 KNEKEDKRPRTAFTAEQLQRLKAEFQANRYITEQRRQTLAQELSLNESQIKIWFQNKRAK . .:::::::::::::::::::::::.:::.::::::.:::::::::::::::::::::: NP_001 NPNKEDKRPRTAFTAEQLQRLKAEFQTNRYLTEQRRQSLAQELSLNESQIKIWFQNKRAK 240 250 260 270 280 290 360 370 380 390 pF1KB9 IKKATGIKNGLALHLMAQGLYNHSTTTVQDKDESE :::::: :: ::.:::::::::::::. . :..:: NP_001 IKKATGNKNTLAVHLMAQGLYNHSTTAKEGKSDSE 300 310 320 330 392 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 06:08:11 2016 done: Sun Nov 6 06:08:12 2016 Total Scan time: 10.180 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]