FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB5056, 557 aa 1>>>pF1KB5056 557 - 557 aa - 557 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.0285+/-0.00088; mu= 12.0928+/- 0.053 mean_var=146.2491+/-30.434, 0's: 0 Z-trim(111.9): 57 B-trim: 39 in 1/50 Lambda= 0.106054 statistics sampled from 12663 (12718) to 12663 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.736), E-opt: 0.2 (0.391), width: 16 Scan time: 3.810 The best scores are: opt bits E(32554) CCDS7551.1 NEURL1 gene_id:9148|Hs108|chr10 ( 574) 3786 591.1 1.2e-168 CCDS47342.1 NEURL1B gene_id:54492|Hs108|chr5 ( 555) 962 159.0 1.4e-38 CCDS83042.1 NEURL1B gene_id:54492|Hs108|chr5 ( 373) 913 151.3 1.9e-36 CCDS78085.1 NEURL1B gene_id:54492|Hs108|chr5 ( 315) 591 102.0 1.1e-21 CCDS74542.1 NEURL3 gene_id:93082|Hs108|chr2 ( 262) 474 84.0 2.4e-16 >>CCDS7551.1 NEURL1 gene_id:9148|Hs108|chr10 (574 aa) initn: 3786 init1: 3786 opt: 3786 Z-score: 3141.1 bits: 591.1 E(32554): 1.2e-168 Smith-Waterman score: 3786; 99.8% identity (100.0% similar) in 548 aa overlap (10-557:27-574) 10 20 30 40 pF1KB5 MGGQITRSTLHDSIGGPFPVTSHRCHHKQKHCPAVLPSGGLPA :.:::::::::::::::::::::::::::::::: CCDS75 MGNNFSSIPSLPRGNPSRAPRGHPQNLKDSIGGPFPVTSHRCHHKQKHCPAVLPSGGLPA 10 20 30 40 50 60 50 60 70 80 90 100 pF1KB5 TPLLFHPHTKGSQILMDLSHKAVKRQASFCNAITFSNRPVLIYEQVRLKITKKQCCWSGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 TPLLFHPHTKGSQILMDLSHKAVKRQASFCNAITFSNRPVLIYEQVRLKITKKQCCWSGA 70 80 90 100 110 120 110 120 130 140 150 160 pF1KB5 LRLGFTSKDPSRIHPDSLPKYACPDLVSQSGFWAKALPEEFANEGNIIAFWVDKKGRVFH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 LRLGFTSKDPSRIHPDSLPKYACPDLVSQSGFWAKALPEEFANEGNIIAFWVDKKGRVFH 130 140 150 160 170 180 170 180 190 200 210 220 pF1KB5 RINDSAVMLFFSGVRTADPLWALVDVYGLTRGVQLLDSELVLPDCLRPRSFTALRRPSLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 RINDSAVMLFFSGVRTADPLWALVDVYGLTRGVQLLDSELVLPDCLRPRSFTALRRPSLR 190 200 210 220 230 240 230 240 250 260 270 280 pF1KB5 READDARLSVSLCDLNVPGADGDEAAPAAGCPIPQNSLNSQHSRALPAQLDGDLRFHALR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 READDARLSVSLCDLNVPGADGDEAAPAAGCPIPQNSLNSQHSRALPAQLDGDLRFHALR 250 260 270 280 290 300 290 300 310 320 330 340 pF1KB5 AGAHVRILDEQTVARVEHGRDERALVFTSRPVRVAETIFVKVTRSGGARPGALSFGVTTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 AGAHVRILDEQTVARVEHGRDERALVFTSRPVRVAETIFVKVTRSGGARPGALSFGVTTC 310 320 330 340 350 360 350 360 370 380 390 400 pF1KB5 DPGTLRPADLPFSPEALVDRKEFWAVCRVPGPLHSGDILGLVVNADGELHLSHNGAAAGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 DPGTLRPADLPFSPEALVDRKEFWAVCRVPGPLHSGDILGLVVNADGELHLSHNGAAAGM 370 380 390 400 410 420 410 420 430 440 450 460 pF1KB5 QLCVDASQPLWMLFGLHGTITQIRILGSTILAERGIPSLPCSPASTPTSPSALGSRLSDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 QLCVDASQPLWMLFGLHGTITQIRILGSTILAERGIPSLPCSPASTPTSPSALGSRLSDP 430 440 450 460 470 480 470 480 490 500 510 520 pF1KB5 LLSTCSSGPLGSSAGGTAPNSPVSLPESPVTPGLGQWSDECTICYEHAVDTVIYTCGHMC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 LLSTCSSGPLGSSAGGTAPNSPVSLPESPVTPGLGQWSDECTICYEHAVDTVIYTCGHMC 490 500 510 520 530 540 530 540 550 pF1KB5 LCYACGLRLKKALHACCPICRRPIKDIIKTYRSS :::::::::::::::::::::::::::::::::: CCDS75 LCYACGLRLKKALHACCPICRRPIKDIIKTYRSS 550 560 570 >>CCDS47342.1 NEURL1B gene_id:54492|Hs108|chr5 (555 aa) initn: 1374 init1: 588 opt: 962 Z-score: 806.1 bits: 159.0 E(32554): 1.4e-38 Smith-Waterman score: 1493; 43.6% identity (67.5% similar) in 567 aa overlap (8-555:3-554) 10 20 30 40 50 pF1KB5 MGGQITRSTLHDSIGGPFPVTSHRCHHKQKHC-PAVLPSGGLPATPLLFHPHTKGSQILM .:.: .. : : . : . : :. : .: :: ..::... . CCDS47 MGNTVHRTLPDPSPPA--RLLATRPCCGPGPERRPVLGEAPR-FHAQAKGKNVRL 10 20 30 40 50 60 70 80 90 100 110 pF1KB5 DLSHKAVKRQASFCNAITFSNRPVLIYEQVRLKITKKQCCWSGALRLGFTSKDPSRIHPD : . . :. ::::..::..::. .::::::... . ::::::.:::..::: . . CCDS47 DGHSRRATRRNSFCNGVTFTQRPIRLYEQVRLRLVAVRPGWSGALRFGFTAHDPSLMSAQ 60 70 80 90 100 110 120 130 140 150 160 170 pF1KB5 SLPKYACPDLVSQSGFWAKALPEEFANEGNIIAFWVDKKGRVFHRINDSAVMLFFSGVRT ..:::::::::.. :.:::::::..: . ...:.:.:..::::. .::. .:: :: . CCDS47 DIPKYACPDLVTRPGYWAKALPENLALRDTVLAYWADRHGRVFYSVNDGEPVLFHCGVAV 120 130 140 150 160 170 180 190 200 210 220 pF1KB5 ADPLWALVDVYGLTRGVQLLDS---ELVLPDCLRPRSFTALRRPSLR-------READDA . :::::.::::.: ::::.: . . : : :.: :: . : .. CCDS47 GGPLWALIDVYGITDEVQLLESAFADTLTPARLSQARFSACLPPSSHDAANFDNNELENN 180 190 200 210 220 230 230 240 250 260 270 280 pF1KB5 RLSVSLCDLNVPGADGDEAAPAAGCPIPQNSLNSQHSRALPAQLDGDLRFHALRAGAHVR .. ..: : . : : : ::. :: . . . . :: :..:::::: : : : CCDS47 QVVAKLGHLALGRAPGPPPADAAAAAIPCGPRERPRPASSPALLEADLRFHATR-GPDVS 240 250 260 270 280 290 290 300 310 320 330 340 pF1KB5 ILDEQTVARVEHGRDERALVFTSRPVRVAETIFVKVTRSGGARPGALSFGVTTCDPGTLR . .. :: . . :.:::. ::.: .:..::.: : : : ::::.::.:.::::.:: CCDS47 LSADRKVACAPRPDGGRTLVFSERPLRPGESLFVEVGRPGLAAPGALAFGITSCDPGVLR 300 310 320 330 340 350 350 360 370 380 390 400 pF1KB5 PADLPFSPEALVDRKEFWAVCRVPGPLHSG-DILGLVVNADGELHLSHNGAAAGMQLCVD : .:: .:.::.::::.:.: :. ::. :: : :.... :.. :. :: : :::: CCDS47 PNELPADPDALLDRKEYWVVARA-GPVPSGGDALSFTLRPGGDVLLGINGRPRGRLLCVD 360 370 380 390 400 410 410 420 430 440 450 460 pF1KB5 ASQPLWMLFGLHGTIT-QIRILGSTILAERGIPSLPCSPASTPTSPSALGSRL---SDPL ..: :: .:...: .. :.:.::. : :::.: : : ::. :: CCDS47 TTQALWAFFAVRGGVAGQLRLLGT----------LQSSPATTTPSGSLSGSQDDSDSDMT 420 430 440 450 460 470 480 490 500 510 520 pF1KB5 LSTCSSGPLGSSAGGTAPNSPVSLPESPV-TPG--LGQWSDECTICYEHAVDTVIYTCGH .:. .:. . :. :::.::.: : ::: .: : . :::.:.. :::::::::: CCDS47 FSVNQSSSASESSLVTAPSSPLSPPVSPVFSPPEPAGIKNGECTVCFDGEVDTVIYTCGH 470 480 490 500 510 520 530 540 550 pF1KB5 MCLCYACGLRLKKALHACCPICRRPIKDIIKTYRSS ::::..::::::. .::::::::::::.:: :: CCDS47 MCLCHSCGLRLKRQARACCPICRRPIKDVIKIYRP 530 540 550 >>CCDS83042.1 NEURL1B gene_id:54492|Hs108|chr5 (373 aa) initn: 852 init1: 406 opt: 913 Z-score: 767.9 bits: 151.3 E(32554): 1.9e-36 Smith-Waterman score: 929; 44.7% identity (66.3% similar) in 356 aa overlap (208-555:31-372) 180 190 200 210 220 230 pF1KB5 RTADPLWALVDVYGLTRGVQLLDSELVLPDCLRPRSFTALRRPSLRREADDARLSVSLCD :: : : : . : .. .. ..: CCDS83 MGNTVHRTLPESAFADTLTPARLSQARFSACLPPSSHDAANFDN--NELENNQVVAKLGH 10 20 30 40 50 240 250 260 270 280 290 pF1KB5 LNVPGADGDEAAPAAGCPIPQNSLNSQHSRALPAQLDGDLRFHALRAGAHVRILDEQTVA : . : : : ::. :: . . . . :: :..:::::: : : : . .. :: CCDS83 LALGRAPGPPPADAAAAAIPCGPRERPRPASSPALLEADLRFHATR-GPDVSLSADRKVA 60 70 80 90 100 110 300 310 320 330 340 350 pF1KB5 RVEHGRDERALVFTSRPVRVAETIFVKVTRSGGARPGALSFGVTTCDPGTLRPADLPFSP . . :.:::. ::.: .:..::.: : : : ::::.::.:.::::.::: .:: .: CCDS83 CAPRPDGGRTLVFSERPLRPGESLFVEVGRPGLAAPGALAFGITSCDPGVLRPNELPADP 120 130 140 150 160 170 360 370 380 390 400 410 pF1KB5 EALVDRKEFWAVCRVPGPLHSG-DILGLVVNADGELHLSHNGAAAGMQLCVDASQPLWML .::.::::.:.: :. ::. :: : :.... :.. :. :: : ::::..: :: . CCDS83 DALLDRKEYWVVARA-GPVPSGGDALSFTLRPGGDVLLGINGRPRGRLLCVDTTQALWAF 180 190 200 210 220 230 420 430 440 450 460 470 pF1KB5 FGLHGTIT-QIRILGSTILAERGIPSLPCSPASTPTSPSALGSRL---SDPLLSTCSSGP :...: .. :.:.::. : :::.: : : ::. :: .:. .:. CCDS83 FAVRGGVAGQLRLLGT----------LQSSPATTTPSGSLSGSQDDSDSDMTFSVNQSSS 240 250 260 270 280 480 490 500 510 520 pF1KB5 LGSSAGGTAPNSPVSLPESPV-TPG--LGQWSDECTICYEHAVDTVIYTCGHMCLCYACG . :. :::.::.: : ::: .: : . :::.:.. ::::::::::::::..:: CCDS83 ASESSLVTAPSSPLSPPVSPVFSPPEPAGIKNGECTVCFDGEVDTVIYTCGHMCLCHSCG 290 300 310 320 330 340 530 540 550 pF1KB5 LRLKKALHACCPICRRPIKDIIKTYRSS ::::. .::::::::::::.:: :: CCDS83 LRLKRQARACCPICRRPIKDVIKIYRP 350 360 370 >>CCDS78085.1 NEURL1B gene_id:54492|Hs108|chr5 (315 aa) initn: 912 init1: 582 opt: 591 Z-score: 502.6 bits: 102.0 E(32554): 1.1e-21 Smith-Waterman score: 607; 39.0% identity (61.7% similar) in 287 aa overlap (278-555:40-314) 250 260 270 280 290 300 pF1KB5 AAPAAGCPIPQNSLNSQHSRALPAQLDGDLRFHALRAGAHVRILDEQTVARVEHGRDERA :::: : .:: :: .. .... . CCDS78 PDPSPPARLLATRPCCGPGPERRPVLGEAPRFHAQAKGKNVR-LDGHSRRATRRNSFCNG 10 20 30 40 50 60 310 320 330 340 350 360 pF1KB5 LVFTSRPVRVAETIFVKVTRSGGARPGALSFGVTTCDPGTLRPADLP-FSPEALVDRKEF ..::.::.:. : . .... . ::: :: :. ::. . :.: .. :: : . CCDS78 VTFTQRPIRLYEQVRLRLVAVRPGWSGALRFGFTAHDPSLMSAQDIPKYACPDLVTRPGY 70 80 90 100 110 120 370 380 390 400 410 420 pF1KB5 WAVCRVPGPLHSGD-ILGLVVNADGELHLSHNGAAAGMQLC-VDASQPLWMLFGLHGTIT :: .: : : .:. .. :.. : : . . : : .. ::: :. ..: CCDS78 WAKA-LPENLALRDTVLAYWADRHGRVFYSVNDGEPVLFHCGVAVGGPLWALIDVYGITD 130 140 150 160 170 180 430 440 450 460 470 480 pF1KB5 QIRILGSTILAERGIPSLPCSPASTPTSPSALGSRL---SDPLLSTCSSGPLGSSAGGTA ....::. : :::.: : : ::. :: .:. .:. . :. :: CCDS78 EVQLLGT----------LQSSPATTTPSGSLSGSQDDSDSDMTFSVNQSSSASESSLVTA 190 200 210 220 230 490 500 510 520 530 pF1KB5 PNSPVSLPESPV-TPG--LGQWSDECTICYEHAVDTVIYTCGHMCLCYACGLRLKKALHA :.::.: : ::: .: : . :::.:.. ::::::::::::::..::::::. .: CCDS78 PSSPLSPPVSPVFSPPEPAGIKNGECTVCFDGEVDTVIYTCGHMCLCHSCGLRLKRQARA 240 250 260 270 280 290 540 550 pF1KB5 CCPICRRPIKDIIKTYRSS :::::::::::.:: :: CCDS78 CCPICRRPIKDVIKIYRP 300 310 >>CCDS74542.1 NEURL3 gene_id:93082|Hs108|chr2 (262 aa) initn: 680 init1: 474 opt: 474 Z-score: 406.9 bits: 84.0 E(32554): 2.4e-16 Smith-Waterman score: 474; 41.5% identity (70.4% similar) in 159 aa overlap (42-200:14-172) 20 30 40 50 60 70 pF1KB5 DSIGGPFPVTSHRCHHKQKHCPAVLPSGGLPATPLLFHPHTKGSQILMDLSHKAVKRQAS : : :: ..::.:. .: ..:... CCDS74 MGAQLCFEANAKAPREALRFHAEAKGAQVRLDTRGCIAHRRTT 10 20 30 40 80 90 100 110 120 130 pF1KB5 FCNAITFSNRPVLIYEQVRLKITKKQCCWSGALRLGFTSKDPSRIHPDSLPKYACPDLVS : ..:.::.::: . :.: :.. ... : :.::.::: ::. . ::: . :::: CCDS74 FHDGIVFSQRPVRLGERVALRVLREESGWCGGLRVGFTRLDPACVSVPSLPPFLCPDLEE 50 60 70 80 90 100 140 150 160 170 180 190 pF1KB5 QSGFWAKALPEEFANEGNIIAFWVDKKGRVFHRINDSAVMLFFSGVRTADPLWALVDVYG :: :: .::: : :... ::::..: .: ..: . .:. :: .. ::::..:::: CCDS74 QSPTWAAVLPEGCALTGDLVRFWVDRRGCLFAKVNAGCRLLLREGVPVGAPLWAVMDVYG 110 120 130 140 150 160 200 210 220 230 240 250 pF1KB5 LTRGVQLLDSELVLPDCLRPRSFTALRRPSLRREADDARLSVSLCDLNVPGADGDEAAPA :....::: CCDS74 TTKAIELLDPTASRLPTPMPWDLSNKAVPEPKATPGEECAICFYHAANTRLVPCGHTYFC 170 180 190 200 210 220 557 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 04:04:26 2016 done: Mon Nov 7 04:04:26 2016 Total Scan time: 3.810 Total Display time: 0.040 Function used was FASTA [36.3.4 Apr, 2011]