FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE0462, 227 aa 1>>>pF1KE0462 227 - 227 aa - 227 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.9301+/-0.000753; mu= 10.9354+/- 0.045 mean_var=70.9104+/-14.038, 0's: 0 Z-trim(109.0): 18 B-trim: 15 in 1/52 Lambda= 0.152307 statistics sampled from 10604 (10619) to 10604 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.326), width: 16 Scan time: 2.220 The best scores are: opt bits E(32554) CCDS5493.1 TMED4 gene_id:222068|Hs108|chr7 ( 227) 1519 342.4 1.4e-94 CCDS78227.1 TMED4 gene_id:222068|Hs108|chr7 ( 186) 1197 271.6 2.4e-73 CCDS4428.1 TMED9 gene_id:54732|Hs108|chr5 ( 235) 1172 266.2 1.3e-71 CCDS78226.1 TMED4 gene_id:222068|Hs108|chr7 ( 178) 880 202.0 2.1e-52 CCDS9840.1 TMED10 gene_id:10972|Hs108|chr14 ( 219) 319 78.7 3.3e-15 CCDS9250.1 TMED2 gene_id:10959|Hs108|chr12 ( 201) 253 64.2 7e-11 >>CCDS5493.1 TMED4 gene_id:222068|Hs108|chr7 (227 aa) initn: 1519 init1: 1519 opt: 1519 Z-score: 1811.4 bits: 342.4 E(32554): 1.4e-94 Smith-Waterman score: 1519; 100.0% identity (100.0% similar) in 227 aa overlap (1-227:1-227) 10 20 30 40 50 60 pF1KE0 MAGVGAGPLRAMGRQALLLLALCATGAQGLYFHIGETEKRCFIEEIPDETMVIGNYRTQM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 MAGVGAGPLRAMGRQALLLLALCATGAQGLYFHIGETEKRCFIEEIPDETMVIGNYRTQM 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 WDKQKEVFLPSTPGLGMHVEVKDPDGKVVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 WDKQKEVFLPSTPGLGMHVEVKDPDGKVVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE0 MALFAGGKLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 MALFAGGKLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYR 130 140 150 160 170 180 190 200 210 220 pF1KE0 EERFRLTSESTNQRVLWWSIAQTVILILTGIWQMRHLKSFFEAKKLV ::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 EERFRLTSESTNQRVLWWSIAQTVILILTGIWQMRHLKSFFEAKKLV 190 200 210 220 >>CCDS78227.1 TMED4 gene_id:222068|Hs108|chr7 (186 aa) initn: 1197 init1: 1197 opt: 1197 Z-score: 1430.4 bits: 271.6 E(32554): 2.4e-73 Smith-Waterman score: 1197; 100.0% identity (100.0% similar) in 178 aa overlap (1-178:1-178) 10 20 30 40 50 60 pF1KE0 MAGVGAGPLRAMGRQALLLLALCATGAQGLYFHIGETEKRCFIEEIPDETMVIGNYRTQM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 MAGVGAGPLRAMGRQALLLLALCATGAQGLYFHIGETEKRCFIEEIPDETMVIGNYRTQM 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 WDKQKEVFLPSTPGLGMHVEVKDPDGKVVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 WDKQKEVFLPSTPGLGMHVEVKDPDGKVVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE0 MALFAGGKLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 MALFAGGKLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRAS 130 140 150 160 170 180 190 200 210 220 pF1KE0 EERFRLTSESTNQRVLWWSIAQTVILILTGIWQMRHLKSFFEAKKLV CCDS78 AYLLVI >>CCDS4428.1 TMED9 gene_id:54732|Hs108|chr5 (235 aa) initn: 1163 init1: 1163 opt: 1172 Z-score: 1399.1 bits: 266.2 E(32554): 1.3e-71 Smith-Waterman score: 1172; 78.9% identity (91.9% similar) in 223 aa overlap (5-227:15-235) 10 20 30 40 50 pF1KE0 MAGVGAGPLRAMGRQALLLLALCATGAQGLYFHIGETEKRCFIEEIPDET :.: :.: : ::.: : :: ...::::::::::.:::::::::: CCDS44 MAVELGVLLVRPRPGTGLGRVM-RTLLLVLWL-ATRGSALYFHIGETEKKCFIEEIPDET 10 20 30 40 50 60 70 80 90 100 110 pF1KE0 MVIGNYRTQMWDKQKEVFLPSTPGLGMHVEVKDPDGKVVLSRQYGSEGRFTFTSHTPGDH :::::::::..:::.: . :.:::::: ::::::. ::.:.:::::::::::::::::.: CCDS44 MVIGNYRTQLYDKQREEYQPATPGLGMFVEVKDPEDKVILARQYGSEGRFTFTSHTPGEH 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE0 QICLHSNSTRMALFAGGKLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQI :::::::::...::::: ::::::::::::::.: ::::::::.:::::.:::..::::: CCDS44 QICLHSNSTKFSLFAGGMLRVHLDIQVGEHANDYAEIAAKDKLSELQLRVRQLVEQVEQI 120 130 140 150 160 170 180 190 200 210 220 pF1KE0 QKEQDYQRYREERFRLTSESTNQRVLWWSIAQTVILILTGIWQMRHLKSFFEAKKLV ::::.:::.:::::: :::::::::::::: ::.::. :.:::::::::::::::: CCDS44 QKEQNYQRWREERFRQTSESTNQRVLWWSILQTLILVAIGVWQMRHLKSFFEAKKLV 180 190 200 210 220 230 >>CCDS78226.1 TMED4 gene_id:222068|Hs108|chr7 (178 aa) initn: 1188 init1: 880 opt: 880 Z-score: 1054.3 bits: 202.0 E(32554): 2.1e-52 Smith-Waterman score: 1094; 78.4% identity (78.4% similar) in 227 aa overlap (1-227:1-178) 10 20 30 40 50 60 pF1KE0 MAGVGAGPLRAMGRQALLLLALCATGAQGLYFHIGETEKRCFIEEIPDETMVIGNYRTQM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 MAGVGAGPLRAMGRQALLLLALCATGAQGLYFHIGETEKRCFIEEIPDETMVIGNYRTQM 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 WDKQKEVFLPSTPGLGMHVEVKDPDGKVVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 WDKQKEVFLPSTPGLGMHVEVKDPDGKVVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE0 MALFAGGKLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYR ::::::::: :: CCDS78 MALFAGGKL-------------------------------------------------YR 130 190 200 210 220 pF1KE0 EERFRLTSESTNQRVLWWSIAQTVILILTGIWQMRHLKSFFEAKKLV ::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 EERFRLTSESTNQRVLWWSIAQTVILILTGIWQMRHLKSFFEAKKLV 140 150 160 170 >>CCDS9840.1 TMED10 gene_id:10972|Hs108|chr14 (219 aa) initn: 319 init1: 242 opt: 319 Z-score: 386.6 bits: 78.7 E(32554): 3.3e-15 Smith-Waterman score: 376; 34.2% identity (64.1% similar) in 231 aa overlap (1-227:1-218) 10 20 30 40 50 pF1KE0 MAGVGAGPLRAMGRQALLLLALCATGAQ---GLYFHIGETEKRCFIEEIPDETMVIGNYR :.:... : : : : :: : : . .. ::. . ..:. ::: . .: : : CCDS98 MSGLSGPPARR-GPFPLALLLLFLLGPRLVLAISFHLPINSRKCLREEIHKDLLVTGAY- 10 20 30 40 50 60 70 80 90 100 110 pF1KE0 TQMWDKQKEVFLPSTPGLGMHVEVKDPDGKVVLSRQYGSEGRFTFTSHTPGDHQICLHSN .. :.. .. :: :... : :... :.. ...:.:.::.. ..:..:. CCDS98 -EISDQSG-----GAGGLRSHLKITDSAGHILYSKEDATKGKFAFTTEDYDMFEVCFESK 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE0 ST-RMALFAGGKLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDY .: :. .: : ::.. : .:.:: ::: .:: :... :.: : :.: .. : CCDS98 GTGRIP----DQL-VILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAY 120 130 140 150 160 180 190 200 210 220 pF1KE0 QRYREERFRLTSESTNQRVLWWSIAQTVILILTGIWQMRHLKSFFEAKKLV .. :::..: :.:::: :::..:: . :: . ::. .:. ::.::::. CCDS98 MKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLIE 170 180 190 200 210 >>CCDS9250.1 TMED2 gene_id:10959|Hs108|chr12 (201 aa) initn: 283 init1: 142 opt: 253 Z-score: 308.8 bits: 64.2 E(32554): 7e-11 Smith-Waterman score: 276; 27.4% identity (59.9% similar) in 212 aa overlap (17-227:9-201) 10 20 30 40 50 60 pF1KE0 MAGVGAGPLRAMGRQALLLLALCATGAQGLYFHIGETEKRCFIEEIPDETMVIGNYRTQM .:: :: :: ..: . : ..::.:.. . : CCDS92 MVTLAELLVLLAALLAT-VSGYFVSIDAHAEECFFERVTSGT---------- 10 20 30 40 70 80 90 100 110 pF1KE0 WDKQKEVFLPSTPG-LGMHVEVKDPDGKVVLSRQYGSEGRFTFTSHTPGDHQICLHSNST :. .: . : : . ::. ::.: . . . : :..::..: : ...:. :. CCDS92 --KMGLIFEVAEGGFLDIDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCF---SN 50 60 70 80 90 120 130 140 150 160 170 pF1KE0 RMALFAGGKLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRY ::. .. . .:: . ..... : ..:: :. .: . ...::.:.. CCDS92 RMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEM---INELAVAMTAVKHEQEYMEV 100 110 120 130 140 150 180 190 200 210 220 pF1KE0 REERFRLTSESTNQRVLWWSIAQTVILILTGIWQMRHLKSFFEAKKLV ::. : ...::.::. ::. ....:. . :. .:: :::....: CCDS92 RERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVRRVV 160 170 180 190 200 227 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 04:06:39 2016 done: Mon Nov 7 04:06:39 2016 Total Scan time: 2.220 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]