FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1396, 67 aa 1>>>pF1KE1396 67 - 67 aa - 67 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 3.9933+/-0.000225; mu= 13.8283+/- 0.014 mean_var=48.3252+/- 9.615, 0's: 0 Z-trim(123.6): 8 B-trim: 73 in 1/52 Lambda= 0.184496 statistics sampled from 43716 (43727) to 43716 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.862), E-opt: 0.2 (0.513), width: 16 Scan time: 3.920 The best scores are: opt bits E(85289) NP_061131 (OMIM: 606611) beta-defensin 103 precurs ( 67) 479 133.3 2.9e-32 NP_004933 (OMIM: 602215) beta-defensin 4A precurso ( 64) 187 55.5 7e-09 NP_001032588 (OMIM: 615243) beta-defensin 114 prec ( 69) 122 38.3 0.0012 NP_005209 (OMIM: 602056) beta-defensin 1 prepropro ( 68) 115 36.4 0.0043 >>NP_061131 (OMIM: 606611) beta-defensin 103 precursor [ (67 aa) initn: 479 init1: 479 opt: 479 Z-score: 700.2 bits: 133.3 E(85289): 2.9e-32 Smith-Waterman score: 479; 100.0% identity (100.0% similar) in 67 aa overlap (1-67:1-67) 10 20 30 40 50 60 pF1KE1 MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGR 10 20 30 40 50 60 pF1KE1 KCCRRKK ::::::: NP_061 KCCRRKK >>NP_004933 (OMIM: 602215) beta-defensin 4A precursor [H (64 aa) initn: 211 init1: 111 opt: 187 Z-score: 280.4 bits: 55.5 E(85289): 7e-09 Smith-Waterman score: 187; 42.4% identity (65.2% similar) in 66 aa overlap (1-65:1-63) 10 20 30 40 50 pF1KE1 MRIHYLLFALLFLFLVPVPG-HGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRG ::. ::::..::.::.:.:: ::: . . : :. : . : . .::: :. : NP_004 MRVLYLLFSFLFIFLMPLPGVFGGIGDPVT---CLKSGAICHPVFCPRRYKQIGTCGLPG 10 20 30 40 50 60 pF1KE1 RKCCRRKK :::.. NP_004 TKCCKKP 60 >>NP_001032588 (OMIM: 615243) beta-defensin 114 precurso (69 aa) initn: 139 init1: 74 opt: 122 Z-score: 186.5 bits: 38.3 E(85289): 0.0012 Smith-Waterman score: 122; 34.8% identity (57.6% similar) in 66 aa overlap (1-66:1-61) 10 20 30 40 50 60 pF1KE1 MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGR ::: : : : .. .. .:. ..:. . : : ::: .:: .:.:: :: . NP_001 MRIFYYLHFLCYVTFI-LPATCTLVNADR---CTKRYGRCKR-DCLESEKQIDICSLPRK 10 20 30 40 50 pF1KE1 KCCRRKK :: .: NP_001 ICCTEKLYEEDDMF 60 >>NP_005209 (OMIM: 602056) beta-defensin 1 preproprotein (68 aa) initn: 122 init1: 66 opt: 115 Z-score: 176.5 bits: 36.4 E(85289): 0.0043 Smith-Waterman score: 115; 35.7% identity (57.1% similar) in 70 aa overlap (1-64:1-68) 10 20 30 40 50 pF1KE1 MRIHYLLFALLFLFLVPVPGHGGIINTL----QKYYCRVRGGRCAVLSCLPKEEQI-GKC :: :::. : :.: . . :.... : ..: : ::.: .: : .: : : NP_005 MRTSYLLLFTLCLLLSEMASGGNFLTGLGHRSDHYNCVSSGGQCLYSAC-PIFTKIQGTC 10 20 30 40 50 60 pF1KE1 STRGR-KCCRRKK ::. :::. NP_005 Y-RGKAKCCK 60 67 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 04:07:07 2016 done: Mon Nov 7 04:07:08 2016 Total Scan time: 3.920 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]