FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1396, 67 aa
  1>>>pF1KE1396 67 - 67 aa - 67 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.1131+/-0.00044; mu= 13.3030+/- 0.027
 mean_var=52.9995+/-10.251, 0's: 0 Z-trim(116.9): 18  B-trim: 52 in 1/49
 Lambda= 0.176173
 statistics sampled from 17538 (17556) to 17538 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.879), E-opt: 0.2 (0.539), width:  16
 Scan time:  1.340

The best scores are:                                      opt bits E(32554)
CCDS43701.1 DEFB103A gene_id:414325|Hs108|chr8     (  67)  479 127.8 4.9e-31
CCDS34810.1 DEFB103B gene_id:55894|Hs108|chr8      (  67)  479 127.8 4.9e-31


>>CCDS43701.1 DEFB103A gene_id:414325|Hs108|chr8          (67 aa)
 initn: 479 init1: 479 opt: 479  Z-score: 670.7  bits: 127.8 E(32554): 4.9e-31
Smith-Waterman score: 479; 100.0% identity (100.0% similar) in 67 aa overlap (1-67:1-67)

               10        20        30        40        50        60
pF1KE1 MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGR
               10        20        30        40        50        60

              
pF1KE1 KCCRRKK
       :::::::
CCDS43 KCCRRKK
              

>>CCDS34810.1 DEFB103B gene_id:55894|Hs108|chr8           (67 aa)
 initn: 479 init1: 479 opt: 479  Z-score: 670.7  bits: 127.8 E(32554): 4.9e-31
Smith-Waterman score: 479; 100.0% identity (100.0% similar) in 67 aa overlap (1-67:1-67)

               10        20        30        40        50        60
pF1KE1 MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGR
               10        20        30        40        50        60

              
pF1KE1 KCCRRKK
       :::::::
CCDS34 KCCRRKK
              




67 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 04:07:07 2016 done: Mon Nov  7 04:07:07 2016
 Total Scan time:  1.340 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]