FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE0271, 358 aa 1>>>pF1KE0271 358 - 358 aa - 358 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.3661+/-0.000283; mu= 12.7748+/- 0.018 mean_var=102.3163+/-20.243, 0's: 0 Z-trim(121.3): 14 B-trim: 0 in 0/54 Lambda= 0.126795 statistics sampled from 37782 (37796) to 37782 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.777), E-opt: 0.2 (0.443), width: 16 Scan time: 9.820 The best scores are: opt bits E(85289) XP_005261261 (OMIM: 603294) PREDICTED: germinal-ce (1980) 450 92.6 8.2e-18 NP_003897 (OMIM: 603294) germinal-center associate (1980) 450 92.6 8.2e-18 XP_005261260 (OMIM: 603294) PREDICTED: germinal-ce (1980) 450 92.6 8.2e-18 XP_005261262 (OMIM: 603294) PREDICTED: germinal-ce (1980) 450 92.6 8.2e-18 >>XP_005261261 (OMIM: 603294) PREDICTED: germinal-center (1980 aa) initn: 397 init1: 159 opt: 450 Z-score: 440.8 bits: 92.6 E(85289): 8.2e-18 Smith-Waterman score: 450; 31.5% identity (58.3% similar) in 333 aa overlap (8-333:634-958) 10 20 30 pF1KE0 MPGCELPVGTCPDMCPAAERAQREREHRLHRLEVVPG :::: :::: :: .:: . .: .::::: XP_005 KEKYRLLDQRDRIMRQARVKRTDLDKARTFVGTCLDMCPEKERYMRETRSQLSVFEVVPG 610 620 630 640 650 660 40 50 60 70 80 90 pF1KE0 CRQDPPRADPQRAVKEYSRPAAGKPRPPPSQLRPPSVLLATVRYLAGEVAESADIARAEV : .: ::::::: .: . .: : .::: :: :. ::. .. .. . . . XP_005 TDQ----VDHAAAVKEYSRSSADQEEPLPHELRPLPVLSRTMDYLVTQIMDQKEGSLRDW 670 680 690 700 710 100 110 120 130 140 150 pF1KE0 ASFVADRLRAVLLDLALQGAGDAEAAVVLEAALATLLTVVARLGPDAARGPADPVLLQAQ .:: .: :.. :.. : : .. ..: . . :.. . . : . . . XP_005 YDFVWNRTRGIRKDITQQHLCDPLTVSLIEKC-TRFHIHCAHFMCEEPMSSFDAKINNEN 720 730 740 750 760 770 160 170 180 190 200 210 pF1KE0 VQEGFGSLRRCYA--RGAGPHPRQPA-FQGLFLLYNLGSVEALHEVLQLPAALRACPPLR . . . ::.. : :. : . : ::: .: .:.. . :.:: :. :.: .. XP_005 MTKCLQSLKEMYQDLRNKGVFCASEAEFQGYNVLLSLNKGDILREVQQFHPAVRNSSEVK 780 790 800 810 820 830 220 230 240 250 260 270 pF1KE0 KALAVDAAFREGNAARLFRLLQTLPYLPSCAVQCHVGHARREALA--RFARAFSTPKGQT :. . ::. .: .:.:.:.:. :: .: ..:. .. :..:: :: . :: .. XP_005 FAVQAFAALNSNNFVRFFKLVQSASYLNACLLHCYFSQIRKDALRALNFAYTVSTQRSTI 840 850 860 870 880 890 280 290 300 310 320 330 pF1KE0 LPLGFMVNLLALDGLREARDLCQAHGLPL-DGEERVVFLRGRYVE-EGLPPASTCKVLVE .:: .: .: . .:: :. ::: . :: : . :. ..: ::: . .:.. XP_005 FPLDGVVRMLLFRDCEEATDFLTCHGLTVSDGC--VELNRSAFLEPEGLSK-TRKSVFIT 900 910 920 930 940 950 340 350 pF1KE0 SKLRGRTLEEVVMAEEEDEGTDRPGSPA :: XP_005 RKLTVSVGEIVNGGPLPPVPRHTPVCSFNSQNKYIGESLAAELPVSTQRPGSDTVGGGRG 960 970 980 990 1000 1010 >>NP_003897 (OMIM: 603294) germinal-center associated nu (1980 aa) initn: 397 init1: 159 opt: 450 Z-score: 440.8 bits: 92.6 E(85289): 8.2e-18 Smith-Waterman score: 450; 31.5% identity (58.3% similar) in 333 aa overlap (8-333:634-958) 10 20 30 pF1KE0 MPGCELPVGTCPDMCPAAERAQREREHRLHRLEVVPG :::: :::: :: .:: . .: .::::: NP_003 KEKYRLLDQRDRIMRQARVKRTDLDKARTFVGTCLDMCPEKERYMRETRSQLSVFEVVPG 610 620 630 640 650 660 40 50 60 70 80 90 pF1KE0 CRQDPPRADPQRAVKEYSRPAAGKPRPPPSQLRPPSVLLATVRYLAGEVAESADIARAEV : .: ::::::: .: . .: : .::: :: :. ::. .. .. . . . NP_003 TDQ----VDHAAAVKEYSRSSADQEEPLPHELRPLPVLSRTMDYLVTQIMDQKEGSLRDW 670 680 690 700 710 100 110 120 130 140 150 pF1KE0 ASFVADRLRAVLLDLALQGAGDAEAAVVLEAALATLLTVVARLGPDAARGPADPVLLQAQ .:: .: :.. :.. : : .. ..: . . :.. . . : . . . NP_003 YDFVWNRTRGIRKDITQQHLCDPLTVSLIEKC-TRFHIHCAHFMCEEPMSSFDAKINNEN 720 730 740 750 760 770 160 170 180 190 200 210 pF1KE0 VQEGFGSLRRCYA--RGAGPHPRQPA-FQGLFLLYNLGSVEALHEVLQLPAALRACPPLR . . . ::.. : :. : . : ::: .: .:.. . :.:: :. :.: .. NP_003 MTKCLQSLKEMYQDLRNKGVFCASEAEFQGYNVLLSLNKGDILREVQQFHPAVRNSSEVK 780 790 800 810 820 830 220 230 240 250 260 270 pF1KE0 KALAVDAAFREGNAARLFRLLQTLPYLPSCAVQCHVGHARREALA--RFARAFSTPKGQT :. . ::. .: .:.:.:.:. :: .: ..:. .. :..:: :: . :: .. NP_003 FAVQAFAALNSNNFVRFFKLVQSASYLNACLLHCYFSQIRKDALRALNFAYTVSTQRSTI 840 850 860 870 880 890 280 290 300 310 320 330 pF1KE0 LPLGFMVNLLALDGLREARDLCQAHGLPL-DGEERVVFLRGRYVE-EGLPPASTCKVLVE .:: .: .: . .:: :. ::: . :: : . :. ..: ::: . .:.. NP_003 FPLDGVVRMLLFRDCEEATDFLTCHGLTVSDGC--VELNRSAFLEPEGLSK-TRKSVFIT 900 910 920 930 940 950 340 350 pF1KE0 SKLRGRTLEEVVMAEEEDEGTDRPGSPA :: NP_003 RKLTVSVGEIVNGGPLPPVPRHTPVCSFNSQNKYIGESLAAELPVSTQRPGSDTVGGGRG 960 970 980 990 1000 1010 >>XP_005261260 (OMIM: 603294) PREDICTED: germinal-center (1980 aa) initn: 397 init1: 159 opt: 450 Z-score: 440.8 bits: 92.6 E(85289): 8.2e-18 Smith-Waterman score: 450; 31.5% identity (58.3% similar) in 333 aa overlap (8-333:634-958) 10 20 30 pF1KE0 MPGCELPVGTCPDMCPAAERAQREREHRLHRLEVVPG :::: :::: :: .:: . .: .::::: XP_005 KEKYRLLDQRDRIMRQARVKRTDLDKARTFVGTCLDMCPEKERYMRETRSQLSVFEVVPG 610 620 630 640 650 660 40 50 60 70 80 90 pF1KE0 CRQDPPRADPQRAVKEYSRPAAGKPRPPPSQLRPPSVLLATVRYLAGEVAESADIARAEV : .: ::::::: .: . .: : .::: :: :. ::. .. .. . . . XP_005 TDQ----VDHAAAVKEYSRSSADQEEPLPHELRPLPVLSRTMDYLVTQIMDQKEGSLRDW 670 680 690 700 710 100 110 120 130 140 150 pF1KE0 ASFVADRLRAVLLDLALQGAGDAEAAVVLEAALATLLTVVARLGPDAARGPADPVLLQAQ .:: .: :.. :.. : : .. ..: . . :.. . . : . . . XP_005 YDFVWNRTRGIRKDITQQHLCDPLTVSLIEKC-TRFHIHCAHFMCEEPMSSFDAKINNEN 720 730 740 750 760 770 160 170 180 190 200 210 pF1KE0 VQEGFGSLRRCYA--RGAGPHPRQPA-FQGLFLLYNLGSVEALHEVLQLPAALRACPPLR . . . ::.. : :. : . : ::: .: .:.. . :.:: :. :.: .. XP_005 MTKCLQSLKEMYQDLRNKGVFCASEAEFQGYNVLLSLNKGDILREVQQFHPAVRNSSEVK 780 790 800 810 820 830 220 230 240 250 260 270 pF1KE0 KALAVDAAFREGNAARLFRLLQTLPYLPSCAVQCHVGHARREALA--RFARAFSTPKGQT :. . ::. .: .:.:.:.:. :: .: ..:. .. :..:: :: . :: .. XP_005 FAVQAFAALNSNNFVRFFKLVQSASYLNACLLHCYFSQIRKDALRALNFAYTVSTQRSTI 840 850 860 870 880 890 280 290 300 310 320 330 pF1KE0 LPLGFMVNLLALDGLREARDLCQAHGLPL-DGEERVVFLRGRYVE-EGLPPASTCKVLVE .:: .: .: . .:: :. ::: . :: : . :. ..: ::: . .:.. XP_005 FPLDGVVRMLLFRDCEEATDFLTCHGLTVSDGC--VELNRSAFLEPEGLSK-TRKSVFIT 900 910 920 930 940 950 340 350 pF1KE0 SKLRGRTLEEVVMAEEEDEGTDRPGSPA :: XP_005 RKLTVSVGEIVNGGPLPPVPRHTPVCSFNSQNKYIGESLAAELPVSTQRPGSDTVGGGRG 960 970 980 990 1000 1010 >>XP_005261262 (OMIM: 603294) PREDICTED: germinal-center (1980 aa) initn: 397 init1: 159 opt: 450 Z-score: 440.8 bits: 92.6 E(85289): 8.2e-18 Smith-Waterman score: 450; 31.5% identity (58.3% similar) in 333 aa overlap (8-333:634-958) 10 20 30 pF1KE0 MPGCELPVGTCPDMCPAAERAQREREHRLHRLEVVPG :::: :::: :: .:: . .: .::::: XP_005 KEKYRLLDQRDRIMRQARVKRTDLDKARTFVGTCLDMCPEKERYMRETRSQLSVFEVVPG 610 620 630 640 650 660 40 50 60 70 80 90 pF1KE0 CRQDPPRADPQRAVKEYSRPAAGKPRPPPSQLRPPSVLLATVRYLAGEVAESADIARAEV : .: ::::::: .: . .: : .::: :: :. ::. .. .. . . . XP_005 TDQ----VDHAAAVKEYSRSSADQEEPLPHELRPLPVLSRTMDYLVTQIMDQKEGSLRDW 670 680 690 700 710 100 110 120 130 140 150 pF1KE0 ASFVADRLRAVLLDLALQGAGDAEAAVVLEAALATLLTVVARLGPDAARGPADPVLLQAQ .:: .: :.. :.. : : .. ..: . . :.. . . : . . . XP_005 YDFVWNRTRGIRKDITQQHLCDPLTVSLIEKC-TRFHIHCAHFMCEEPMSSFDAKINNEN 720 730 740 750 760 770 160 170 180 190 200 210 pF1KE0 VQEGFGSLRRCYA--RGAGPHPRQPA-FQGLFLLYNLGSVEALHEVLQLPAALRACPPLR . . . ::.. : :. : . : ::: .: .:.. . :.:: :. :.: .. XP_005 MTKCLQSLKEMYQDLRNKGVFCASEAEFQGYNVLLSLNKGDILREVQQFHPAVRNSSEVK 780 790 800 810 820 830 220 230 240 250 260 270 pF1KE0 KALAVDAAFREGNAARLFRLLQTLPYLPSCAVQCHVGHARREALA--RFARAFSTPKGQT :. . ::. .: .:.:.:.:. :: .: ..:. .. :..:: :: . :: .. XP_005 FAVQAFAALNSNNFVRFFKLVQSASYLNACLLHCYFSQIRKDALRALNFAYTVSTQRSTI 840 850 860 870 880 890 280 290 300 310 320 330 pF1KE0 LPLGFMVNLLALDGLREARDLCQAHGLPL-DGEERVVFLRGRYVE-EGLPPASTCKVLVE .:: .: .: . .:: :. ::: . :: : . :. ..: ::: . .:.. XP_005 FPLDGVVRMLLFRDCEEATDFLTCHGLTVSDGC--VELNRSAFLEPEGLSK-TRKSVFIT 900 910 920 930 940 950 340 350 pF1KE0 SKLRGRTLEEVVMAEEEDEGTDRPGSPA :: XP_005 RKLTVSVGEIVNGGPLPPVPRHTPVCSFNSQNKYIGESLAAELPVSTQRPGSDTVGGGRG 960 970 980 990 1000 1010 358 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 04:07:44 2016 done: Mon Nov 7 04:07:45 2016 Total Scan time: 9.820 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]