FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5127, 118 aa 1>>>pF1KE5127 118 - 118 aa - 118 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2914+/-0.000324; mu= 9.5454+/- 0.020 mean_var=51.1404+/-10.215, 0's: 0 Z-trim(114.7): 27 B-trim: 551 in 1/52 Lambda= 0.179346 statistics sampled from 24632 (24656) to 24632 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.692), E-opt: 0.2 (0.289), width: 16 Scan time: 4.470 The best scores are: opt bits E(85289) NP_001077861 (OMIM: 602750) D-dopachrome decarboxy ( 118) 766 205.6 1.5e-53 NP_001346 (OMIM: 602750) D-dopachrome decarboxylas ( 118) 766 205.6 1.5e-53 NP_002406 (OMIM: 153620,604302) macrophage migrati ( 115) 248 71.6 3.3e-13 >>NP_001077861 (OMIM: 602750) D-dopachrome decarboxylase (118 aa) initn: 766 init1: 766 opt: 766 Z-score: 1082.2 bits: 205.6 E(85289): 1.5e-53 Smith-Waterman score: 766; 100.0% identity (100.0% similar) in 118 aa overlap (1-118:1-118) 10 20 30 40 50 60 pF1KE5 MPFLELDTNLPANRVPAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MPFLELDTNLPANRVPAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQL 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 SISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRFFPLESWQIGKIGTVMTFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRFFPLESWQIGKIGTVMTFL 70 80 90 100 110 >>NP_001346 (OMIM: 602750) D-dopachrome decarboxylase [H (118 aa) initn: 766 init1: 766 opt: 766 Z-score: 1082.2 bits: 205.6 E(85289): 1.5e-53 Smith-Waterman score: 766; 100.0% identity (100.0% similar) in 118 aa overlap (1-118:1-118) 10 20 30 40 50 60 pF1KE5 MPFLELDTNLPANRVPAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MPFLELDTNLPANRVPAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQL 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 SISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRFFPLESWQIGKIGTVMTFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRFFPLESWQIGKIGTVMTFL 70 80 90 100 110 >>NP_002406 (OMIM: 153620,604302) macrophage migration i (115 aa) initn: 248 init1: 191 opt: 248 Z-score: 358.0 bits: 71.6 E(85289): 3.3e-13 Smith-Waterman score: 248; 36.7% identity (67.0% similar) in 109 aa overlap (1-109:1-108) 10 20 30 40 50 60 pF1KE5 MPFLELDTNLPANRVPAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQL ::.. ..::.: :: :. ..: :. ::: . . : : : ::..::.:::: NP_002 MPMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALC 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 SISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRFFPLESWQIGKIGTVMTFL :. ::: .: :. :::.: . .:...: .. ::. : .. ... ..: NP_002 SLHSIGKIGGAQ-NRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTFA 70 80 90 100 110 118 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 21:38:51 2016 done: Mon Nov 7 21:38:52 2016 Total Scan time: 4.470 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]