FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0122, 265 aa
  1>>>pF1KE0122 265 - 265 aa - 265 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8140+/-0.000709; mu= 12.6213+/- 0.043
 mean_var=72.9746+/-14.611, 0's: 0 Z-trim(109.8): 5  B-trim: 0 in 0/51
 Lambda= 0.150137
 statistics sampled from 11120 (11122) to 11120 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.342), width:  16
 Scan time:  2.540

The best scores are:                                      opt bits E(32554)
CCDS6898.1 COQ4 gene_id:51117|Hs108|chr9           ( 265) 1766 391.2 3.8e-109


>>CCDS6898.1 COQ4 gene_id:51117|Hs108|chr9                (265 aa)
 initn: 1766 init1: 1766 opt: 1766  Z-score: 2072.9  bits: 391.2 E(32554): 3.8e-109
Smith-Waterman score: 1766; 99.6% identity (100.0% similar) in 265 aa overlap (1-265:1-265)

               10        20        30        40        50        60
pF1KE0 MATLLRPVLRRLCGLPGLQRPAAEMPLRARSDGAGPLYSHHLPTSPLQKALLAAGSAAMA
       :::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::
CCDS68 MATLLRPVLRRLCGLPGLQRPAAEMPLRARSDGAGPLYSHHLPTSPLQKGLLAAGSAAMA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LYNPYRHDMVAVLGETTGHRTLKVLRDQMRRDPEGAQILQERPRISTSTLDLGKLQSLPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 LYNPYRHDMVAVLGETTGHRTLKVLRDQMRRDPEGAQILQERPRISTSTLDLGKLQSLPE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 GSLGREYLRFLDVNRVSPDTRAPTRFVDDEELAYVIQRYREVHDMLHTLLGMPTNILGEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 GSLGREYLRFLDVNRVSPDTRAPTRFVDDEELAYVIQRYREVHDMLHTLLGMPTNILGEI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 VVKWFEAVQTGLPMCILGAFFGPIRLGAQSLQVLVSELIPWAVQNGRRAPCVLNLYYERR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 VVKWFEAVQTGLPMCILGAFFGPIRLGAQSLQVLVSELIPWAVQNGRRAPCVLNLYYERR
              190       200       210       220       230       240

              250       260     
pF1KE0 WEQSLRALREELGITAPPMHVQGLA
       :::::::::::::::::::::::::
CCDS68 WEQSLRALREELGITAPPMHVQGLA
              250       260     




265 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:07:48 2016 done: Fri Nov  4 02:07:49 2016
 Total Scan time:  2.540 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]