Result of FASTA (omim) for
pFN21AE0444
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0444, 277 aa
1>>>pF1KE0444 277 - 277 aa - 277 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6022+/-0.000375; mu= 10.2395+/- 0.023
mean_var=115.4479+/-23.453, 0's: 0 Z-trim(116.5): 3 B-trim: 1081 in 1/54
Lambda= 0.119366
statistics sampled from 27783 (27786) to 27783 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.326), width: 16
Scan time: 7.520
The best scores are: opt bits E(85289)
NP_878272 (OMIM: 608249) E3 ubiquitin-protein liga ( 277) 1851 329.3 4.9e-90
NP_878269 (OMIM: 608249) E3 ubiquitin-protein liga ( 277) 1851 329.3 4.9e-90
NP_067001 (OMIM: 608249) E3 ubiquitin-protein liga ( 277) 1851 329.3 4.9e-90
>>NP_878272 (OMIM: 608249) E3 ubiquitin-protein ligase C (277 aa)
initn: 1851 init1: 1851 opt: 1851 Z-score: 1737.4 bits: 329.3 E(85289): 4.9e-90
Smith-Waterman score: 1851; 100.0% identity (100.0% similar) in 277 aa overlap (1-277:1-277)
10 20 30 40 50 60
pF1KE0 MSLCEDMLLCNYRKCRIKLSGYAWVTACSHIFCDQHGSGEFSRSPAICPACNSTLSGKLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_878 MSLCEDMLLCNYRKCRIKLSGYAWVTACSHIFCDQHGSGEFSRSPAICPACNSTLSGKLD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 IVRTELSPSEEYKAMVLAGLRPEIVLDISSRALAFWTYQVHQERLYQEYNFSKAEGHLKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_878 IVRTELSPSEEYKAMVLAGLRPEIVLDISSRALAFWTYQVHQERLYQEYNFSKAEGHLKQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 MEKIYTQQIQSKDVELTSMKGEVTSMKKVLEEYKKKFSDISEKLMERNRQYQKLQGLYDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_878 MEKIYTQQIQSKDVELTSMKGEVTSMKKVLEEYKKKFSDISEKLMERNRQYQKLQGLYDS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 LRLRNITIANHEGTLEPSMIAQSGVLGFPLGNNSKFPLDNTPVRNRGDGDGDFQFRPFFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_878 LRLRNITIANHEGTLEPSMIAQSGVLGFPLGNNSKFPLDNTPVRNRGDGDGDFQFRPFFA
190 200 210 220 230 240
250 260 270
pF1KE0 GSPTAPEPSNSFFSFVSPSRELEQQQVSSRAFKVKRI
:::::::::::::::::::::::::::::::::::::
NP_878 GSPTAPEPSNSFFSFVSPSRELEQQQVSSRAFKVKRI
250 260 270
>>NP_878269 (OMIM: 608249) E3 ubiquitin-protein ligase C (277 aa)
initn: 1851 init1: 1851 opt: 1851 Z-score: 1737.4 bits: 329.3 E(85289): 4.9e-90
Smith-Waterman score: 1851; 100.0% identity (100.0% similar) in 277 aa overlap (1-277:1-277)
10 20 30 40 50 60
pF1KE0 MSLCEDMLLCNYRKCRIKLSGYAWVTACSHIFCDQHGSGEFSRSPAICPACNSTLSGKLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_878 MSLCEDMLLCNYRKCRIKLSGYAWVTACSHIFCDQHGSGEFSRSPAICPACNSTLSGKLD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 IVRTELSPSEEYKAMVLAGLRPEIVLDISSRALAFWTYQVHQERLYQEYNFSKAEGHLKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_878 IVRTELSPSEEYKAMVLAGLRPEIVLDISSRALAFWTYQVHQERLYQEYNFSKAEGHLKQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 MEKIYTQQIQSKDVELTSMKGEVTSMKKVLEEYKKKFSDISEKLMERNRQYQKLQGLYDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_878 MEKIYTQQIQSKDVELTSMKGEVTSMKKVLEEYKKKFSDISEKLMERNRQYQKLQGLYDS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 LRLRNITIANHEGTLEPSMIAQSGVLGFPLGNNSKFPLDNTPVRNRGDGDGDFQFRPFFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_878 LRLRNITIANHEGTLEPSMIAQSGVLGFPLGNNSKFPLDNTPVRNRGDGDGDFQFRPFFA
190 200 210 220 230 240
250 260 270
pF1KE0 GSPTAPEPSNSFFSFVSPSRELEQQQVSSRAFKVKRI
:::::::::::::::::::::::::::::::::::::
NP_878 GSPTAPEPSNSFFSFVSPSRELEQQQVSSRAFKVKRI
250 260 270
>>NP_067001 (OMIM: 608249) E3 ubiquitin-protein ligase C (277 aa)
initn: 1851 init1: 1851 opt: 1851 Z-score: 1737.4 bits: 329.3 E(85289): 4.9e-90
Smith-Waterman score: 1851; 100.0% identity (100.0% similar) in 277 aa overlap (1-277:1-277)
10 20 30 40 50 60
pF1KE0 MSLCEDMLLCNYRKCRIKLSGYAWVTACSHIFCDQHGSGEFSRSPAICPACNSTLSGKLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 MSLCEDMLLCNYRKCRIKLSGYAWVTACSHIFCDQHGSGEFSRSPAICPACNSTLSGKLD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 IVRTELSPSEEYKAMVLAGLRPEIVLDISSRALAFWTYQVHQERLYQEYNFSKAEGHLKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 IVRTELSPSEEYKAMVLAGLRPEIVLDISSRALAFWTYQVHQERLYQEYNFSKAEGHLKQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 MEKIYTQQIQSKDVELTSMKGEVTSMKKVLEEYKKKFSDISEKLMERNRQYQKLQGLYDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 MEKIYTQQIQSKDVELTSMKGEVTSMKKVLEEYKKKFSDISEKLMERNRQYQKLQGLYDS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 LRLRNITIANHEGTLEPSMIAQSGVLGFPLGNNSKFPLDNTPVRNRGDGDGDFQFRPFFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 LRLRNITIANHEGTLEPSMIAQSGVLGFPLGNNSKFPLDNTPVRNRGDGDGDFQFRPFFA
190 200 210 220 230 240
250 260 270
pF1KE0 GSPTAPEPSNSFFSFVSPSRELEQQQVSSRAFKVKRI
:::::::::::::::::::::::::::::::::::::
NP_067 GSPTAPEPSNSFFSFVSPSRELEQQQVSSRAFKVKRI
250 260 270
277 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 08:37:17 2016 done: Thu Nov 3 08:37:18 2016
Total Scan time: 7.520 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]