Result of FASTA (omim) for
pFN21AE0270
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0270, 244 aa
1>>>pF1KE0270 244 - 244 aa - 244 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2349+/-0.000274; mu= 12.2896+/- 0.018
mean_var=112.8395+/-22.083, 0's: 0 Z-trim(122.6): 437 B-trim: 85 in 1/55
Lambda= 0.120738
statistics sampled from 40626 (41101) to 40626 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.795), E-opt: 0.2 (0.482), width: 16
Scan time: 6.720
The best scores are: opt bits E(85289)
NP_001020471 (OMIM: 616448) ras-related protein Ra ( 244) 1645 296.2 3.5e-80
XP_006722363 (OMIM: 616448) PREDICTED: ras-related ( 212) 1134 207.1 2e-53
NP_057215 (OMIM: 612672) ras-related protein Rab-1 ( 200) 630 119.3 5.1e-27
NP_057614 (OMIM: 613532) ras-related protein Rab-8 ( 207) 599 113.9 2.2e-25
NP_001304844 (OMIM: 612829) ras-related protein Ra ( 225) 597 113.6 3e-25
NP_612462 (OMIM: 612829) ras-related protein Rab-3 ( 227) 597 113.6 3e-25
NP_005361 (OMIM: 165040) ras-related protein Rab-8 ( 207) 596 113.4 3.2e-25
XP_011526322 (OMIM: 165040) PREDICTED: ras-related ( 215) 596 113.4 3.2e-25
NP_002857 (OMIM: 179490) ras-related protein Rab-3 ( 220) 590 112.4 6.8e-25
XP_011526466 (OMIM: 179490) PREDICTED: ras-related ( 220) 590 112.4 6.8e-25
NP_002861 (OMIM: 602672) ras-related protein Rab-1 ( 203) 588 112.0 8.2e-25
NP_004152 (OMIM: 179508) ras-related protein Rab-1 ( 205) 587 111.8 9.3e-25
NP_112243 (OMIM: 612565) ras-related protein Rab-1 ( 201) 577 110.1 3.1e-24
NP_004274 (OMIM: 604350) ras-related protein Rab-3 ( 219) 566 108.2 1.2e-23
XP_016857447 (OMIM: 179510) PREDICTED: ras-related ( 219) 557 106.6 3.7e-23
NP_002858 (OMIM: 179510) ras-related protein Rab-3 ( 219) 557 106.6 3.7e-23
NP_001272990 (OMIM: 605693) ras-related protein Ra ( 203) 554 106.1 5e-23
NP_055303 (OMIM: 605693) ras-related protein Rab-3 ( 203) 554 106.1 5e-23
NP_001272988 (OMIM: 605693) ras-related protein Ra ( 203) 554 106.1 5e-23
NP_001272989 (OMIM: 605693) ras-related protein Ra ( 203) 554 106.1 5e-23
NP_055168 (OMIM: 605455) ras-related protein Rab-2 ( 256) 527 101.5 1.5e-21
NP_006852 (OMIM: 604199) ras-related protein Rab-3 ( 201) 521 100.3 2.6e-21
NP_067075 (OMIM: 602207,614222) ras-related protei ( 206) 521 100.3 2.7e-21
NP_004654 (OMIM: 605570) ras-related protein Rab-1 ( 216) 519 100.0 3.6e-21
NP_116235 (OMIM: 607466) ras-related protein Rab-2 ( 216) 513 99.0 7.3e-21
NP_057406 (OMIM: 612673) ras-related protein Rab-1 ( 215) 507 97.9 1.5e-20
NP_001294982 (OMIM: 605455) ras-related protein Ra ( 190) 498 96.3 4.1e-20
NP_004209 (OMIM: 604198) ras-related protein Rab-1 ( 218) 497 96.2 5.1e-20
XP_016873867 (OMIM: 612565) PREDICTED: ras-related ( 237) 496 96.0 6.1e-20
NP_002856 (OMIM: 179509) ras-related protein Rab-2 ( 212) 494 95.6 7.2e-20
NP_001006639 (OMIM: 609956) ras-related protein Ra ( 223) 494 95.7 7.4e-20
XP_011520750 (OMIM: 605455) PREDICTED: ras-related ( 231) 476 92.5 6.7e-19
NP_057238 (OMIM: 612945) ras-related protein Rab-4 ( 213) 474 92.2 8e-19
NP_004569 (OMIM: 179511) ras-related protein Rab-4 ( 218) 469 91.3 1.5e-18
NP_001317400 (OMIM: 609956) ras-related protein Ra ( 196) 465 90.6 2.2e-18
NP_001157461 (OMIM: 609956) ras-related protein Ra ( 228) 465 90.6 2.5e-18
NP_741995 (OMIM: 300774) ras-related protein Rab-3 ( 213) 464 90.4 2.7e-18
NP_783865 (OMIM: 609956) ras-related protein Rab-3 ( 216) 458 89.4 5.6e-18
NP_065120 (OMIM: 612942) ras-related protein Rab-2 ( 213) 457 89.2 6.3e-18
XP_011519340 (OMIM: 614178) PREDICTED: EF-hand cal ( 493) 455 89.1 1.5e-17
XP_011519339 (OMIM: 614178) PREDICTED: EF-hand cal ( 493) 455 89.1 1.5e-17
NP_001138430 (OMIM: 614178) EF-hand calcium-bindin ( 731) 455 89.3 2e-17
XP_006719084 (OMIM: 614178) PREDICTED: EF-hand cal ( 732) 455 89.3 2e-17
XP_011519336 (OMIM: 614178) PREDICTED: EF-hand cal ( 732) 455 89.3 2e-17
XP_011519338 (OMIM: 614178) PREDICTED: EF-hand cal ( 732) 455 89.3 2e-17
NP_112586 (OMIM: 605950,615222) ras-related protei ( 229) 439 86.1 5.8e-17
XP_011530601 (OMIM: 605950,615222) PREDICTED: ras- ( 277) 439 86.2 6.7e-17
NP_057661 (OMIM: 615852) ras-related protein Rab-6 ( 208) 436 85.5 7.8e-17
NP_001243340 (OMIM: 602207,614222) ras-related pro ( 197) 434 85.2 9.5e-17
NP_055814 (OMIM: 612398) ras-related protein Rab-2 ( 225) 431 84.7 1.5e-16
>>NP_001020471 (OMIM: 616448) ras-related protein Rab-12 (244 aa)
initn: 1645 init1: 1645 opt: 1645 Z-score: 1560.4 bits: 296.2 E(85289): 3.5e-80
Smith-Waterman score: 1645; 100.0% identity (100.0% similar) in 244 aa overlap (1-244:1-244)
10 20 30 40 50 60
pF1KE0 MDPGAALQRRAGGGGGLGAGSPALSGGQGRRRKQPPRPADFKLQVIIIGSRGVGKTSLME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDPGAALQRRAGGGGGLGAGSPALSGGQGRRRKQPPRPADFKLQVIIIGSRGVGKTSLME
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 RFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIIL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 VYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 RFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRNELSNSILSLQPEPEIPPELPPPRPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRNELSNSILSLQPEPEIPPELPPPRPH
190 200 210 220 230 240
pF1KE0 VRCC
::::
NP_001 VRCC
>>XP_006722363 (OMIM: 616448) PREDICTED: ras-related pro (212 aa)
initn: 1132 init1: 1132 opt: 1134 Z-score: 1080.2 bits: 207.1 E(85289): 2e-53
Smith-Waterman score: 1134; 97.1% identity (98.3% similar) in 175 aa overlap (70-244:40-212)
40 50 60 70 80 90
pF1KE0 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA
.:. ::::::::::::::::::::::::
XP_006 TIPLTNMGTCWPGELGSSTPWVPRKLSGSRSCRE--GVDFKIKTVELRGKKIRLQIWDTA
10 20 30 40 50 60
100 110 120 130 140 150
pF1KE0 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC
70 80 90 100 110 120
160 170 180 190 200 210
pF1KE0 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRNELSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRNELSN
130 140 150 160 170 180
220 230 240
pF1KE0 SILSLQPEPEIPPELPPPRPHVRCC
:::::::::::::::::::::::::
XP_006 SILSLQPEPEIPPELPPPRPHVRCC
190 200 210
>>NP_057215 (OMIM: 612672) ras-related protein Rab-10 [H (200 aa)
initn: 606 init1: 511 opt: 630 Z-score: 606.1 bits: 119.3 E(85289): 5.1e-27
Smith-Waterman score: 630; 52.6% identity (84.2% similar) in 171 aa overlap (40-210:7-176)
10 20 30 40 50 60
pF1KE0 RAGGGGGLGAGSPALSGGQGRRRKQPPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCE
:. .....::. ::::: .. ::.::.:
NP_057 MAKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNT
10 20 30
70 80 90 100 110 120
pF1KE0 ACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKET
. ::.:.:::::::::.::::.::::::::::::..::..:::.: ::.::::::. ..
NP_057 TFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKS
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE0 FDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKD
:... ::.. ::..:.::.: .:.::: : . : . . .::..:.. :.:: :.:::
NP_057 FENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIARE-HGIRFFETSAKA
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE0 NFNVDEIFLKLVDDILKKMPLDILRNELSNSILSLQPEPEIPPELPPPRPHVRCC
:.:... :: :..:::.: :.
NP_057 NINIEKAFLTLAEDILRKTPVKEPNSENVDISSGGGVTGWKSKCC
160 170 180 190 200
>>NP_057614 (OMIM: 613532) ras-related protein Rab-8B [H (207 aa)
initn: 577 init1: 505 opt: 599 Z-score: 576.7 bits: 113.9 E(85289): 2.2e-25
Smith-Waterman score: 599; 50.3% identity (83.4% similar) in 169 aa overlap (40-208:6-173)
10 20 30 40 50 60
pF1KE0 RAGGGGGLGAGSPALSGGQGRRRKQPPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCE
:. .....::. ::::: :. ::..:.:
NP_057 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNT
10 20 30
70 80 90 100 110 120
pF1KE0 ACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKET
. ::.:.::::.:.:: ::::.:::::::::::: .::.::::.: ::.::::::....
NP_057 TFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKS
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE0 FDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKD
::.. .:.. :...:: :.: ...::: : . :......:::.: . :..: :.:::.
NP_057 FDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDY-GIKFLETSAKS
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE0 NFNVDEIFLKLVDDILKKMPLDILRNELSNSILSLQPEPEIPPELPPPRPHVRCC
. ::.: :. :. ::. :.
NP_057 SANVEEAFFTLARDIMTKLNRKMNDSNSAGAGGPVKITENRSKKTSFFRCSLL
160 170 180 190 200
>>NP_001304844 (OMIM: 612829) ras-related protein Rab-3C (225 aa)
initn: 618 init1: 473 opt: 597 Z-score: 574.3 bits: 113.6 E(85289): 3e-25
Smith-Waterman score: 597; 45.1% identity (75.0% similar) in 204 aa overlap (40-243:26-225)
10 20 30 40 50 60
pF1KE0 RAGGGGGLGAGSPALSGGQGRRRKQPPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCE
:. ....:::. .:::::.. :..::.:
NP_001 MELYGKMASAQDARYGQKDSSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTS
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 ACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKET
: ::::.:::.::: :.:.:::::::::::. .::.::::.: :.::.::::..:.
NP_001 AFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEES
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE0 FDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKD
:. . : .: :. ..:...::::: : : .: :. ..:.....:. :..: :.::::
NP_001 FNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQL-GFEFFETSAKD
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE0 NFNVDEIFLKLVDDILKKMPLDILRNELSNSILSLQPEPEIPPELPPPRPHVRCC
:.:: . : .::: : :: .. : . .: . . . .. :::.:. :
NP_001 NINVKQTFERLVDIICDKMSESL---ETDPAITAAKQNTRLKETPPPPQPNCAC
180 190 200 210 220
>>NP_612462 (OMIM: 612829) ras-related protein Rab-3C is (227 aa)
initn: 618 init1: 473 opt: 597 Z-score: 574.3 bits: 113.6 E(85289): 3e-25
Smith-Waterman score: 597; 45.1% identity (75.0% similar) in 204 aa overlap (40-243:28-227)
10 20 30 40 50 60
pF1KE0 RAGGGGGLGAGSPALSGGQGRRRKQPPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCE
:. ....:::. .:::::.. :..::.:
NP_612 MRHEAPMQMASAQDARYGQKDSSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTS
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 ACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKET
: ::::.:::.::: :.:.:::::::::::. .::.::::.: :.::.::::..:.
NP_612 AFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEES
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE0 FDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKD
:. . : .: :. ..:...::::: : : .: :. ..:.....:. :..: :.::::
NP_612 FNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQL-GFEFFETSAKD
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE0 NFNVDEIFLKLVDDILKKMPLDILRNELSNSILSLQPEPEIPPELPPPRPHVRCC
:.:: . : .::: : :: .. : . .: . . . .. :::.:. :
NP_612 NINVKQTFERLVDIICDKMSESL---ETDPAITAAKQNTRLKETPPPPQPNCAC
180 190 200 210 220
>>NP_005361 (OMIM: 165040) ras-related protein Rab-8A [H (207 aa)
initn: 592 init1: 497 opt: 596 Z-score: 573.9 bits: 113.4 E(85289): 3.2e-25
Smith-Waterman score: 596; 45.8% identity (79.2% similar) in 192 aa overlap (40-229:6-196)
10 20 30 40 50 60
pF1KE0 RAGGGGGLGAGSPALSGGQGRRRKQPPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCE
:. .....::. ::::: .. ::..:.:
NP_005 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNS
10 20 30
70 80 90 100 110 120
pF1KE0 ACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKET
. ::.:.::::.:.:: ::.:.:::::::::::: .::.::::.: ::.::::::....
NP_005 TFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKS
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE0 FDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKD
::.. .:.. :...:: :.: ...::: : . :......:::.: . :..: :.:::
NP_005 FDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDY-GIKFMETSAKA
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE0 NFNVDEIFLKLVDDILKKMPLDILRN--ELSNSILSLQPEPEIPPELPPPRPHVRCC
:.::.. :. :. :: :: . : . ::. ... :. .
NP_005 NINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQKRSSFFRCVLL
160 170 180 190 200
>>XP_011526322 (OMIM: 165040) PREDICTED: ras-related pro (215 aa)
initn: 592 init1: 497 opt: 596 Z-score: 573.7 bits: 113.4 E(85289): 3.2e-25
Smith-Waterman score: 596; 44.9% identity (78.6% similar) in 196 aa overlap (40-235:6-197)
10 20 30 40 50 60
pF1KE0 RAGGGGGLGAGSPALSGGQGRRRKQPPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCE
:. .....::. ::::: .. ::..:.:
XP_011 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNS
10 20 30
70 80 90 100 110 120
pF1KE0 ACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKET
. ::.:.::::.:.:: ::.:.:::::::::::: .::.::::.: ::.::::::....
XP_011 TFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKS
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE0 FDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKD
::.. .:.. :...:: :.: ...::: : . :......:::.: . :..: :.:::
XP_011 FDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDY-GIKFMETSAKA
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE0 NFNVDEIFLKLVDDILKKMPLDILRNELSNSILSLQPEPEIPPELPPPRPHVRCC
:.::.. :. :. :: :: . ... ... . :: . .::
XP_011 NINVENAFFTLARDIKAKMDKKLGQKD---NMVCKDREPWLGEKLPRSLGQGQGWCLITA
160 170 180 190 200 210
XP_011 GSSS
>>NP_002857 (OMIM: 179490) ras-related protein Rab-3A [H (220 aa)
initn: 596 init1: 458 opt: 590 Z-score: 567.9 bits: 112.4 E(85289): 6.8e-25
Smith-Waterman score: 590; 43.6% identity (74.5% similar) in 204 aa overlap (40-243:20-220)
10 20 30 40 50 60
pF1KE0 RAGGGGGLGAGSPALSGGQGRRRKQPPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCE
:. ....:::. .:::::.. :..::.:
NP_002 MASATDSRYGQKESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTP
10 20 30 40
70 80 90 100 110 120
pF1KE0 ACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKET
: ::::.:::.::. :.:.:::::::::::. .::.::::.: :.::.::::..:.
NP_002 AFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEES
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE0 FDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKD
:. . : .: :. ..:..:::::: : : .: .. ..:...:... :..: ::::::
NP_002 FNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHL-GFEFFEASAKD
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE0 NFNVDEIFLKLVDDILKKMPLDILRNELSNSILSLQPEPEIPPELPPPRPHVRCC
:.:: . : .::: : .:: .. . . .. . . :.. . ::. :
NP_002 NINVKQTFERLVDVICEKMSESL--DTADPAVTGAKQGPQLSDQQVPPHQDCAC
170 180 190 200 210 220
>>XP_011526466 (OMIM: 179490) PREDICTED: ras-related pro (220 aa)
initn: 596 init1: 458 opt: 590 Z-score: 567.9 bits: 112.4 E(85289): 6.8e-25
Smith-Waterman score: 590; 43.6% identity (74.5% similar) in 204 aa overlap (40-243:20-220)
10 20 30 40 50 60
pF1KE0 RAGGGGGLGAGSPALSGGQGRRRKQPPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCE
:. ....:::. .:::::.. :..::.:
XP_011 MASATDSRYGQKESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTP
10 20 30 40
70 80 90 100 110 120
pF1KE0 ACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKET
: ::::.:::.::. :.:.:::::::::::. .::.::::.: :.::.::::..:.
XP_011 AFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEES
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE0 FDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKD
:. . : .: :. ..:..:::::: : : .: .. ..:...:... :..: ::::::
XP_011 FNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHL-GFEFFEASAKD
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE0 NFNVDEIFLKLVDDILKKMPLDILRNELSNSILSLQPEPEIPPELPPPRPHVRCC
:.:: . : .::: : .:: .. . . .. . . :.. . ::. :
XP_011 NINVKQTFERLVDVICEKMSESL--DTADPAVTGAKQGPQLSDQQVPPHQDCAC
170 180 190 200 210 220
244 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 04:13:12 2016 done: Mon Nov 7 04:13:13 2016
Total Scan time: 6.720 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]