Result of FASTA (ccds) for
pFN21AB7340
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7340, 1156 aa
1>>>pF1KB7340 1156 - 1156 aa - 1156 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.6794+/-0.00109; mu= -6.1035+/- 0.066
mean_var=343.4044+/-71.469, 0's: 0 Z-trim(114.2): 46 B-trim: 519 in 2/52
Lambda= 0.069210
statistics sampled from 14709 (14752) to 14709 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.743), E-opt: 0.2 (0.453), width: 16
Scan time: 6.280
The best scores are: opt bits E(32554)
CCDS10015.1 NPAP1 gene_id:23742|Hs108|chr15 (1156) 7818 795.3 0
>>CCDS10015.1 NPAP1 gene_id:23742|Hs108|chr15 (1156 aa)
initn: 7818 init1: 7818 opt: 7818 Z-score: 4233.9 bits: 795.3 E(32554): 0
Smith-Waterman score: 7818; 100.0% identity (100.0% similar) in 1156 aa overlap (1-1156:1-1156)
10 20 30 40 50 60
pF1KB7 MGNLLSKFRPGCRRRPLPGPGRGAPAPLSRDASPPGRAHSVPTPRPFRGLFRRNARRRPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MGNLLSKFRPGCRRRPLPGPGRGAPAPLSRDASPPGRAHSVPTPRPFRGLFRRNARRRPS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 AASIFVAPKRPCPLPRAAAAPLGVLPAVGWGLAIRKTPMLPARNPPRFGHPSSVRIPPPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AASIFVAPKRPCPLPRAAAAPLGVLPAVGWGLAIRKTPMLPARNPPRFGHPSSVRIPPPS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 RMFTLLLPSPREPAVKARKPIPATLLEETEVWAQEGPRRVKKDEDPVQIEGEDDEKRTPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RMFTLLLPSPREPAVKARKPIPATLLEETEVWAQEGPRRVKKDEDPVQIEGEDDEKRTPL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 SSGEASSTSRSQGTQGDVASFRCSPGPLEGNVYHKFSENSMSEKAQASPASSCLEGPAMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SSGEASSTSRSQGTQGDVASFRCSPGPLEGNVYHKFSENSMSEKAQASPASSCLEGPAMP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 STHSQAGCARHLGKPDPDATAPPEPAVGCSLLQQKLAAEVLNEEPPPSSLGLPIPLMSGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 STHSQAGCARHLGKPDPDATAPPEPAVGCSLLQQKLAAEVLNEEPPPSSLGLPIPLMSGK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 RMPDEKPFCIPPRSAAPPRAARNRPCKRKMSIPLLLPLPPSLPLLWDRGELPPPAKLPCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RMPDEKPFCIPPRSAAPPRAARNRPCKRKMSIPLLLPLPPSLPLLWDRGELPPPAKLPCL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 SVEGDLHTLEKSPEYKRNSRILEDKTETMTNSSITQPAPSFSQPVQTTDSLPLTTYTSQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SVEGDLHTLEKSPEYKRNSRILEDKTETMTNSSITQPAPSFSQPVQTTDSLPLTTYTSQV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 SAPLPIPDLADLATGPLILPIPPLSTTPKMDEKIAFTIPNSPLALPADLVPILGDQSNEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SAPLPIPDLADLATGPLILPIPPLSTTPKMDEKIAFTIPNSPLALPADLVPILGDQSNEK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB7 GGSYNSVVGAAPLTSDPPTPPSSTPSFKPPVTRESPISMCVDSPPPLSFLTLLPVPSTGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GGSYNSVVGAAPLTSDPPTPPSSTPSFKPPVTRESPISMCVDSPPPLSFLTLLPVPSTGT
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB7 SVITSKPMNSTSVISTVTTNASAHLTSQTAVDPEVVNMDTTAPSQVVIFTSSLSSRVSSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SVITSKPMNSTSVISTVTTNASAHLTSQTAVDPEVVNMDTTAPSQVVIFTSSLSSRVSSL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB7 PNSQIHCSAEQRHPGKTSVYTSPLPFIFHNTTPSFNQLFGKEATPQPKFEAPDGQPQKAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PNSQIHCSAEQRHPGKTSVYTSPLPFIFHNTTPSFNQLFGKEATPQPKFEAPDGQPQKAS
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB7 LPSACVFLSLPIIPPPDTSTLVNSASTASSSKPPIETNAMHTTPPSKAVILQSASVSKKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LPSACVFLSLPIIPPPDTSTLVNSASTASSSKPPIETNAMHTTPPSKAVILQSASVSKKY
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB7 LPFYLGLPGSGNTQPSGNTASVQGSTSLPAQSVRAPATASNHPLNPGATPQPKFGAPDGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LPFYLGLPGSGNTQPSGNTASVQGSTSLPAQSVRAPATASNHPLNPGATPQPKFGAPDGP
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB7 QQKTSLPSAHDFLSLPIMVPPDTSTLVSSASAASLSKPAIDTSDMNTTPPSKTVILQSTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QQKTSLPSAHDFLSLPIMVPPDTSTLVSSASAASLSKPAIDTSDMNTTPPSKTVILQSTF
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB7 VSRKEEYIRFYMGLPGSGNTLHSDSIASAQVSTSFPAQADRRPTTTSSHPLNTGSISHST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VSRKEEYIRFYMGLPGSGNTLHSDSIASAQVSTSFPAQADRRPTTTSSHPLNTGSISHST
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB7 LGATDGQQKSDSSFILGNPATPAPVIGLTSPSVQPLSGSIIPPGFAELTSPYTALGTPVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LGATDGQQKSDSSFILGNPATPAPVIGLTSPSVQPLSGSIIPPGFAELTSPYTALGTPVN
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KB7 AEPVEGHNASAFPNGTAKTSGFRIATGMPGTGDSTLLVGNTIPGPQVIMGPGTPMDGGSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AEPVEGHNASAFPNGTAKTSGFRIATGMPGTGDSTLLVGNTIPGPQVIMGPGTPMDGGSI
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KB7 GFSMSAPGPSSTSGELNIGQGQSGTPSTTSVFPFGQAAWDPTGHSMAAAPQGASNIPVFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GFSMSAPGPSSTSGELNIGQGQSGTPSTTSVFPFGQAAWDPTGHSMAAAPQGASNIPVFG
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KB7 YTSAAAYIPGLDPPTQNSCSGMGGDGTRSIVGGPCVPAFQQCILQHTWTERKFYTSSTHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 YTSAAAYIPGLDPPTQNSCSGMGGDGTRSIVGGPCVPAFQQCILQHTWTERKFYTSSTHY
1090 1100 1110 1120 1130 1140
1150
pF1KB7 YGQETYVRRHVCFQLP
::::::::::::::::
CCDS10 YGQETYVRRHVCFQLP
1150
1156 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 08:50:04 2016 done: Sat Nov 5 08:50:05 2016
Total Scan time: 6.280 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]