Result of FASTA (omim) for
pFN21AE0411
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0411, 311 aa
1>>>pF1KE0411 311 - 311 aa - 311 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1432+/-0.000407; mu= 16.0850+/- 0.025
mean_var=62.8503+/-13.289, 0's: 0 Z-trim(111.1): 15 B-trim: 508 in 1/51
Lambda= 0.161778
statistics sampled from 19605 (19615) to 19605 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.58), E-opt: 0.2 (0.23), width: 16
Scan time: 7.110
The best scores are: opt bits E(85289)
NP_057559 (OMIM: 611176) JNK1/MAPK8-associated mem ( 311) 2098 498.5 6.9e-141
NP_001271130 (OMIM: 611176) JNK1/MAPK8-associated ( 325) 2089 496.4 3.1e-140
NP_001092095 (OMIM: 611176) JNK1/MAPK8-associated ( 305) 2051 487.6 1.4e-137
NP_001271131 (OMIM: 611176) JNK1/MAPK8-associated ( 319) 2046 486.4 3.2e-137
NP_001271132 (OMIM: 611176) JNK1/MAPK8-associated ( 248) 1632 389.7 3.2e-108
NP_001271133 (OMIM: 611176) JNK1/MAPK8-associated ( 213) 1471 352.1 5.7e-97
XP_006720234 (OMIM: 611176) PREDICTED: JNK1/MAPK8- ( 227) 1462 350.0 2.6e-96
XP_016876855 (OMIM: 611176) PREDICTED: JNK1/MAPK8- ( 207) 1424 341.1 1.1e-93
>>NP_057559 (OMIM: 611176) JNK1/MAPK8-associated membran (311 aa)
initn: 2098 init1: 2098 opt: 2098 Z-score: 2650.3 bits: 498.5 E(85289): 6.9e-141
Smith-Waterman score: 2098; 100.0% identity (100.0% similar) in 311 aa overlap (1-311:1-311)
10 20 30 40 50 60
pF1KE0 MAVDIQPACLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYCQPCTESPELYDWLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MAVDIQPACLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYCQPCTESPELYDWLY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 LGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECSMAAIITLLVSDPVGVLYIRSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 LGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECSMAAIITLLVSDPVGVLYIRSC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 RVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLVLMMLLRPLLVKKIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 RVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLVLMMLLRPLLVKKIA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 CGLGKSDRFKSIYAALYFFPILTVLQAVGGGLLYYAFPYIILVLSLVTLAVYMSASEIEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 CGLGKSDRFKSIYAALYFFPILTVLQAVGGGLLYYAFPYIILVLSLVTLAVYMSASEIEN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 CYDLLVRKKRLIVLFSHWLLHAYGIISISRVDKLEQDLPLLALVPTPALFYLFTAKFTEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 CYDLLVRKKRLIVLFSHWLLHAYGIISISRVDKLEQDLPLLALVPTPALFYLFTAKFTEP
250 260 270 280 290 300
310
pF1KE0 SRILSEGANGH
:::::::::::
NP_057 SRILSEGANGH
310
>>NP_001271130 (OMIM: 611176) JNK1/MAPK8-associated memb (325 aa)
initn: 2089 init1: 2089 opt: 2089 Z-score: 2638.7 bits: 496.4 E(85289): 3.1e-140
Smith-Waterman score: 2089; 99.4% identity (100.0% similar) in 311 aa overlap (1-311:15-325)
10 20 30 40
pF1KE0 MAVDIQPACLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYC
..::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKGEIQQSLGAWVLLTVDIQPACLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYC
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE0 QPCTESPELYDWLYLGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECSMAAIITL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QPCTESPELYDWLYLGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECSMAAIITL
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE0 LVSDPVGVLYIRSCRVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVSDPVGVLYIRSCRVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLV
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE0 LMMLLRPLLVKKIACGLGKSDRFKSIYAALYFFPILTVLQAVGGGLLYYAFPYIILVLSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LMMLLRPLLVKKIACGLGKSDRFKSIYAALYFFPILTVLQAVGGGLLYYAFPYIILVLSL
190 200 210 220 230 240
230 240 250 260 270 280
pF1KE0 VTLAVYMSASEIENCYDLLVRKKRLIVLFSHWLLHAYGIISISRVDKLEQDLPLLALVPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTLAVYMSASEIENCYDLLVRKKRLIVLFSHWLLHAYGIISISRVDKLEQDLPLLALVPT
250 260 270 280 290 300
290 300 310
pF1KE0 PALFYLFTAKFTEPSRILSEGANGH
:::::::::::::::::::::::::
NP_001 PALFYLFTAKFTEPSRILSEGANGH
310 320
>>NP_001092095 (OMIM: 611176) JNK1/MAPK8-associated memb (305 aa)
initn: 2051 init1: 2051 opt: 2051 Z-score: 2591.2 bits: 487.6 E(85289): 1.4e-137
Smith-Waterman score: 2051; 100.0% identity (100.0% similar) in 304 aa overlap (8-311:2-305)
10 20 30 40 50 60
pF1KE0 MAVDIQPACLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYCQPCTESPELYDWLY
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MACLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYCQPCTESPELYDWLY
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 LGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECSMAAIITLLVSDPVGVLYIRSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECSMAAIITLLVSDPVGVLYIRSC
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE0 RVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLVLMMLLRPLLVKKIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLVLMMLLRPLLVKKIA
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE0 CGLGKSDRFKSIYAALYFFPILTVLQAVGGGLLYYAFPYIILVLSLVTLAVYMSASEIEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CGLGKSDRFKSIYAALYFFPILTVLQAVGGGLLYYAFPYIILVLSLVTLAVYMSASEIEN
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE0 CYDLLVRKKRLIVLFSHWLLHAYGIISISRVDKLEQDLPLLALVPTPALFYLFTAKFTEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CYDLLVRKKRLIVLFSHWLLHAYGIISISRVDKLEQDLPLLALVPTPALFYLFTAKFTEP
240 250 260 270 280 290
310
pF1KE0 SRILSEGANGH
:::::::::::
NP_001 SRILSEGANGH
300
>>NP_001271131 (OMIM: 611176) JNK1/MAPK8-associated memb (319 aa)
initn: 2046 init1: 2046 opt: 2046 Z-score: 2584.6 bits: 486.4 E(85289): 3.2e-137
Smith-Waterman score: 2046; 100.0% identity (100.0% similar) in 303 aa overlap (9-311:17-319)
10 20 30 40 50
pF1KE0 MAVDIQPACLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYCQPCTES
::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKGEIQQSLGAWVLLTCLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYCQPCTES
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 PELYDWLYLGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECSMAAIITLLVSDPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PELYDWLYLGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECSMAAIITLLVSDPV
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 GVLYIRSCRVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLVLMMLLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GVLYIRSCRVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLVLMMLLR
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE0 PLLVKKIACGLGKSDRFKSIYAALYFFPILTVLQAVGGGLLYYAFPYIILVLSLVTLAVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLLVKKIACGLGKSDRFKSIYAALYFFPILTVLQAVGGGLLYYAFPYIILVLSLVTLAVY
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE0 MSASEIENCYDLLVRKKRLIVLFSHWLLHAYGIISISRVDKLEQDLPLLALVPTPALFYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSASEIENCYDLLVRKKRLIVLFSHWLLHAYGIISISRVDKLEQDLPLLALVPTPALFYL
250 260 270 280 290 300
300 310
pF1KE0 FTAKFTEPSRILSEGANGH
:::::::::::::::::::
NP_001 FTAKFTEPSRILSEGANGH
310
>>NP_001271132 (OMIM: 611176) JNK1/MAPK8-associated memb (248 aa)
initn: 1632 init1: 1632 opt: 1632 Z-score: 2064.0 bits: 389.7 E(85289): 3.2e-108
Smith-Waterman score: 1632; 100.0% identity (100.0% similar) in 248 aa overlap (64-311:1-248)
40 50 60 70 80 90
pF1KE0 CPRGQRTNAQKYCQPCTESPELYDWLYLGFMAMLPLVLHWFFIEWYSGKKSSSALFQHIT
::::::::::::::::::::::::::::::
NP_001 MAMLPLVLHWFFIEWYSGKKSSSALFQHIT
10 20 30
100 110 120 130 140 150
pF1KE0 ALFECSMAAIITLLVSDPVGVLYIRSCRVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALFECSMAAIITLLVSDPVGVLYIRSCRVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPL
40 50 60 70 80 90
160 170 180 190 200 210
pF1KE0 YTIVFIYYAFCLVLMMLLRPLLVKKIACGLGKSDRFKSIYAALYFFPILTVLQAVGGGLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YTIVFIYYAFCLVLMMLLRPLLVKKIACGLGKSDRFKSIYAALYFFPILTVLQAVGGGLL
100 110 120 130 140 150
220 230 240 250 260 270
pF1KE0 YYAFPYIILVLSLVTLAVYMSASEIENCYDLLVRKKRLIVLFSHWLLHAYGIISISRVDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YYAFPYIILVLSLVTLAVYMSASEIENCYDLLVRKKRLIVLFSHWLLHAYGIISISRVDK
160 170 180 190 200 210
280 290 300 310
pF1KE0 LEQDLPLLALVPTPALFYLFTAKFTEPSRILSEGANGH
::::::::::::::::::::::::::::::::::::::
NP_001 LEQDLPLLALVPTPALFYLFTAKFTEPSRILSEGANGH
220 230 240
>>NP_001271133 (OMIM: 611176) JNK1/MAPK8-associated memb (213 aa)
initn: 1471 init1: 1471 opt: 1471 Z-score: 1861.9 bits: 352.1 E(85289): 5.7e-97
Smith-Waterman score: 1471; 100.0% identity (100.0% similar) in 213 aa overlap (1-213:1-213)
10 20 30 40 50 60
pF1KE0 MAVDIQPACLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYCQPCTESPELYDWLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAVDIQPACLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYCQPCTESPELYDWLY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 LGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECSMAAIITLLVSDPVGVLYIRSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECSMAAIITLLVSDPVGVLYIRSC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 RVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLVLMMLLRPLLVKKIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLVLMMLLRPLLVKKIA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 CGLGKSDRFKSIYAALYFFPILTVLQAVGGGLLYYAFPYIILVLSLVTLAVYMSASEIEN
:::::::::::::::::::::::::::::::::
NP_001 CGLGKSDRFKSIYAALYFFPILTVLQAVGGGLL
190 200 210
250 260 270 280 290 300
pF1KE0 CYDLLVRKKRLIVLFSHWLLHAYGIISISRVDKLEQDLPLLALVPTPALFYLFTAKFTEP
>>XP_006720234 (OMIM: 611176) PREDICTED: JNK1/MAPK8-asso (227 aa)
initn: 1462 init1: 1462 opt: 1462 Z-score: 1850.1 bits: 350.0 E(85289): 2.6e-96
Smith-Waterman score: 1462; 99.1% identity (100.0% similar) in 213 aa overlap (1-213:15-227)
10 20 30 40
pF1KE0 MAVDIQPACLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYC
..::::::::::::::::::::::::::::::::::::::::::::
XP_006 MKGEIQQSLGAWVLLTVDIQPACLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYC
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE0 QPCTESPELYDWLYLGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECSMAAIITL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 QPCTESPELYDWLYLGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECSMAAIITL
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE0 LVSDPVGVLYIRSCRVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LVSDPVGVLYIRSCRVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLV
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE0 LMMLLRPLLVKKIACGLGKSDRFKSIYAALYFFPILTVLQAVGGGLLYYAFPYIILVLSL
:::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LMMLLRPLLVKKIACGLGKSDRFKSIYAALYFFPILTVLQAVGGGLL
190 200 210 220
230 240 250 260 270 280
pF1KE0 VTLAVYMSASEIENCYDLLVRKKRLIVLFSHWLLHAYGIISISRVDKLEQDLPLLALVPT
>>XP_016876855 (OMIM: 611176) PREDICTED: JNK1/MAPK8-asso (207 aa)
initn: 1424 init1: 1424 opt: 1424 Z-score: 1802.8 bits: 341.1 E(85289): 1.1e-93
Smith-Waterman score: 1424; 100.0% identity (100.0% similar) in 206 aa overlap (8-213:2-207)
10 20 30 40 50 60
pF1KE0 MAVDIQPACLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYCQPCTESPELYDWLY
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MACLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYCQPCTESPELYDWLY
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 LGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECSMAAIITLLVSDPVGVLYIRSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECSMAAIITLLVSDPVGVLYIRSC
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE0 RVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLVLMMLLRPLLVKKIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLVLMMLLRPLLVKKIA
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE0 CGLGKSDRFKSIYAALYFFPILTVLQAVGGGLLYYAFPYIILVLSLVTLAVYMSASEIEN
:::::::::::::::::::::::::::::::::
XP_016 CGLGKSDRFKSIYAALYFFPILTVLQAVGGGLL
180 190 200
250 260 270 280 290 300
pF1KE0 CYDLLVRKKRLIVLFSHWLLHAYGIISISRVDKLEQDLPLLALVPTPALFYLFTAKFTEP
311 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 11:48:29 2016 done: Thu Nov 3 11:48:30 2016
Total Scan time: 7.110 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]