FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1301, 140 aa
  1>>>pF1KE1301 140 - 140 aa - 140 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8445+/-0.000413; mu= 12.8098+/- 0.025
 mean_var=52.3412+/-10.762, 0's: 0 Z-trim(110.2): 38  B-trim: 0 in 0/51
 Lambda= 0.177277
 statistics sampled from 18510 (18512) to 18510 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.592), E-opt: 0.2 (0.217), width:  16
 Scan time:  4.550

The best scores are:                                      opt bits E(85289)
NP_009107 (OMIM: 604576) probable ergosterol biosy ( 140)  911 240.9 5.1e-64


>>NP_009107 (OMIM: 604576) probable ergosterol biosynthe  (140 aa)
 initn: 911 init1: 911 opt: 911  Z-score: 1270.3  bits: 240.9 E(85289): 5.1e-64
Smith-Waterman score: 911; 100.0% identity (100.0% similar) in 140 aa overlap (1-140:1-140)

               10        20        30        40        50        60
pF1KE1 MSRFLNVLRSWLVMVSIIAMGNTLQSFRDHTFLYEKLYTGKPNLVNGLQARTFGIWTLLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MSRFLNVLRSWLVMVSIIAMGNTLQSFRDHTFLYEKLYTGKPNLVNGLQARTFGIWTLLS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 SVIRCLCAIDIHNKTLYHITLWTFLLALGHFLSELFVYGTAAPTIGVLAPLMVASFSILG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 SVIRCLCAIDIHNKTLYHITLWTFLLALGHFLSELFVYGTAAPTIGVLAPLMVASFSILG
               70        80        90       100       110       120

              130       140
pF1KE1 MLVGLRYLEVEPVSRQKKRN
       ::::::::::::::::::::
NP_009 MLVGLRYLEVEPVSRQKKRN
              130       140




140 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 04:13:45 2016 done: Mon Nov  7 04:13:46 2016
 Total Scan time:  4.550 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]