Result of FASTA (omim) for
pFN21AE6158
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6158, 120 aa
1>>>pF1KE6158 120 - 120 aa - 120 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5450+/-0.000275; mu= 10.2661+/- 0.017
mean_var=71.2941+/-14.196, 0's: 0 Z-trim(120.3): 15 B-trim: 758 in 1/54
Lambda= 0.151896
statistics sampled from 35364 (35379) to 35364 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.783), E-opt: 0.2 (0.415), width: 16
Scan time: 3.490
The best scores are: opt bits E(85289)
NP_001121160 (OMIM: 300692) protein BEX4 [Homo sap ( 120) 840 191.9 2.1e-49
NP_001073894 (OMIM: 300692) protein BEX4 [Homo sap ( 120) 840 191.9 2.1e-49
NP_001269603 (OMIM: 300361) protein BEX3 isoform c ( 191) 376 90.4 1.2e-18
NP_055195 (OMIM: 300361) protein BEX3 isoform b [H ( 111) 371 89.1 1.7e-18
NP_996798 (OMIM: 300361) protein BEX3 isoform b [H ( 111) 371 89.1 1.7e-18
NP_996800 (OMIM: 300361) protein BEX3 isoform a [H ( 101) 344 83.2 9.3e-17
NP_001012996 (OMIM: 300693) protein BEX5 [Homo sap ( 111) 279 69.0 2e-12
NP_001153032 (OMIM: 300693) protein BEX5 [Homo sap ( 111) 279 69.0 2e-12
NP_060946 (OMIM: 300690) protein BEX1 [Homo sapien ( 125) 270 67.0 8.5e-12
NP_116010 (OMIM: 300691) protein BEX2 isoform 3 [H ( 128) 241 60.7 7.1e-10
NP_001161873 (OMIM: 300691) protein BEX2 isoform 3 ( 128) 241 60.7 7.1e-10
NP_001161872 (OMIM: 300691) protein BEX2 isoform 2 ( 159) 241 60.7 8.5e-10
NP_001161871 (OMIM: 300691) protein BEX2 isoform 1 ( 160) 241 60.7 8.6e-10
>>NP_001121160 (OMIM: 300692) protein BEX4 [Homo sapiens (120 aa)
initn: 840 init1: 840 opt: 840 Z-score: 1008.1 bits: 191.9 E(85289): 2.1e-49
Smith-Waterman score: 840; 100.0% identity (100.0% similar) in 120 aa overlap (1-120:1-120)
10 20 30 40 50 60
pF1KE6 MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGGGEGQKPGGNIRRGRVRRLVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGGGEGQKPGGNIRRGRVRRLVP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 NFRWAIPNRHIEHNEARDDVERFVGQMMEIKRKTREQQMRHYMRFQTPEPDNHYDFCLIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NFRWAIPNRHIEHNEARDDVERFVGQMMEIKRKTREQQMRHYMRFQTPEPDNHYDFCLIP
70 80 90 100 110 120
>>NP_001073894 (OMIM: 300692) protein BEX4 [Homo sapiens (120 aa)
initn: 840 init1: 840 opt: 840 Z-score: 1008.1 bits: 191.9 E(85289): 2.1e-49
Smith-Waterman score: 840; 100.0% identity (100.0% similar) in 120 aa overlap (1-120:1-120)
10 20 30 40 50 60
pF1KE6 MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGGGEGQKPGGNIRRGRVRRLVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGGGEGQKPGGNIRRGRVRRLVP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 NFRWAIPNRHIEHNEARDDVERFVGQMMEIKRKTREQQMRHYMRFQTPEPDNHYDFCLIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NFRWAIPNRHIEHNEARDDVERFVGQMMEIKRKTREQQMRHYMRFQTPEPDNHYDFCLIP
70 80 90 100 110 120
>>NP_001269603 (OMIM: 300361) protein BEX3 isoform c [Ho (191 aa)
initn: 412 init1: 132 opt: 376 Z-score: 455.5 bits: 90.4 E(85289): 1.2e-18
Smith-Waterman score: 376; 54.3% identity (74.1% similar) in 116 aa overlap (11-120:78-191)
10 20 30 40
pF1KE6 MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGG
:: : .:::: :: : :: ::.: :::
NP_001 VWLPAPRCPELGGLAFGPGKSGAEKQPEKKNLIMANIHQENEEMEQ-PMQNGEEDRPLGG
50 60 70 80 90 100
50 60 70 80 90
pF1KE6 GEGQKPGGNIRRGRVRRLVPNFRWAIPNRHIEHNEARD--DVERFVGQMMEIKRKTREQQ
:::..:.:: :::..:::.::::::::::.:. . . : :.: :. .: ::.:: :: :
NP_001 GEGHQPAGN-RRGQARRLAPNFRWAIPNRQINDGMGGDGDDMEIFMEEMREIRRKLRELQ
110 120 130 140 150 160
100 110 120
pF1KE6 MRHYMRFQTPEPDNHYD----FCLIP
.:. .:. : .::.: :::.:
NP_001 LRNCLRILMGELSNHHDHHDEFCLMP
170 180 190
>>NP_055195 (OMIM: 300361) protein BEX3 isoform b [Homo (111 aa)
initn: 394 init1: 131 opt: 371 Z-score: 453.2 bits: 89.1 E(85289): 1.7e-18
Smith-Waterman score: 371; 55.0% identity (75.7% similar) in 111 aa overlap (16-120:3-111)
10 20 30 40 50 60
pF1KE6 MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGGGEGQKPGGNIRRGRVRRLVP
: .:::: :: : :: ::.: ::::::..:.:: :::..:::.:
NP_055 MANIHQENEEMEQ-PMQNGEEDRPLGGGEGHQPAGN-RRGQARRLAP
10 20 30 40
70 80 90 100 110
pF1KE6 NFRWAIPNRHIEHNEARD--DVERFVGQMMEIKRKTREQQMRHYMRFQTPEPDNHYD---
:::::::::.:. . . : :.: :. .: ::.:: :: :.:. .:. : .::.:
NP_055 NFRWAIPNRQINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHD
50 60 70 80 90 100
120
pF1KE6 -FCLIP
:::.:
NP_055 EFCLMP
110
>>NP_996798 (OMIM: 300361) protein BEX3 isoform b [Homo (111 aa)
initn: 394 init1: 131 opt: 371 Z-score: 453.2 bits: 89.1 E(85289): 1.7e-18
Smith-Waterman score: 371; 55.0% identity (75.7% similar) in 111 aa overlap (16-120:3-111)
10 20 30 40 50 60
pF1KE6 MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGGGEGQKPGGNIRRGRVRRLVP
: .:::: :: : :: ::.: ::::::..:.:: :::..:::.:
NP_996 MANIHQENEEMEQ-PMQNGEEDRPLGGGEGHQPAGN-RRGQARRLAP
10 20 30 40
70 80 90 100 110
pF1KE6 NFRWAIPNRHIEHNEARD--DVERFVGQMMEIKRKTREQQMRHYMRFQTPEPDNHYD---
:::::::::.:. . . : :.: :. .: ::.:: :: :.:. .:. : .::.:
NP_996 NFRWAIPNRQINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHD
50 60 70 80 90 100
120
pF1KE6 -FCLIP
:::.:
NP_996 EFCLMP
110
>>NP_996800 (OMIM: 300361) protein BEX3 isoform a [Homo (101 aa)
initn: 347 init1: 131 opt: 344 Z-score: 421.8 bits: 83.2 E(85289): 9.3e-17
Smith-Waterman score: 344; 53.5% identity (76.2% similar) in 101 aa overlap (26-120:2-101)
10 20 30 40 50 60
pF1KE6 MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGGGEGQKPGGNIRRGRVRRLVP
. : :: ::.: ::::::..:.:: :::..:::.:
NP_996 MEQPMQNGEEDRPLGGGEGHQPAGN-RRGQARRLAP
10 20 30
70 80 90 100 110
pF1KE6 NFRWAIPNRHIEHNEARD--DVERFVGQMMEIKRKTREQQMRHYMRFQTPEPDNHYD---
:::::::::.:. . . : :.: :. .: ::.:: :: :.:. .:. : .::.:
NP_996 NFRWAIPNRQINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHD
40 50 60 70 80 90
120
pF1KE6 -FCLIP
:::.:
NP_996 EFCLMP
100
>>NP_001012996 (OMIM: 300693) protein BEX5 [Homo sapiens (111 aa)
initn: 256 init1: 104 opt: 279 Z-score: 344.2 bits: 69.0 E(85289): 2e-12
Smith-Waterman score: 279; 41.6% identity (67.3% similar) in 113 aa overlap (15-120:2-111)
10 20 30 40 50 60
pF1KE6 MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGGGEGQKPGGNIRRGRVRRLVP
::. .::. :.::.::: . ::::: :.::::.. : .:
NP_001 MENVPKENKVVEKAPVQNEAPA--LGGGEYQEPGGNVK-GVWAPPAP
10 20 30 40
70 80 90 100 110
pF1KE6 NFRWAIPNRHIEHNEA----RDDVERFVGQMMEIKRKTREQQMRHYMRFQTPEP---DNH
.: .::: ... . ::.:::. .: :..:: :: :.:. .:. .: :.:
NP_001 GFGEDVPNRLVDNIDMIDGDGDDMERFMEEMRELRRKIRELQLRYSLRILIGDPPHHDHH
50 60 70 80 90 100
120
pF1KE6 YDFCLIP
.:::.:
NP_001 DEFCLMP
110
>>NP_001153032 (OMIM: 300693) protein BEX5 [Homo sapiens (111 aa)
initn: 256 init1: 104 opt: 279 Z-score: 344.2 bits: 69.0 E(85289): 2e-12
Smith-Waterman score: 279; 41.6% identity (67.3% similar) in 113 aa overlap (15-120:2-111)
10 20 30 40 50 60
pF1KE6 MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGGGEGQKPGGNIRRGRVRRLVP
::. .::. :.::.::: . ::::: :.::::.. : .:
NP_001 MENVPKENKVVEKAPVQNEAPA--LGGGEYQEPGGNVK-GVWAPPAP
10 20 30 40
70 80 90 100 110
pF1KE6 NFRWAIPNRHIEHNEA----RDDVERFVGQMMEIKRKTREQQMRHYMRFQTPEP---DNH
.: .::: ... . ::.:::. .: :..:: :: :.:. .:. .: :.:
NP_001 GFGEDVPNRLVDNIDMIDGDGDDMERFMEEMRELRRKIRELQLRYSLRILIGDPPHHDHH
50 60 70 80 90 100
120
pF1KE6 YDFCLIP
.:::.:
NP_001 DEFCLMP
110
>>NP_060946 (OMIM: 300690) protein BEX1 [Homo sapiens] (125 aa)
initn: 308 init1: 179 opt: 270 Z-score: 332.8 bits: 67.0 E(85289): 8.5e-12
Smith-Waterman score: 270; 38.9% identity (68.3% similar) in 126 aa overlap (1-120:1-125)
10 20 30 40 50 60
pF1KE6 MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGGGEGQKPGGNIRRGRVRRLVP
:::::. :.:.:. :::.:::: ::. ...: . : .:: : :: :: :::. .
NP_060 MESKEKRAVNSLSMENANQENEEKEQVANKGEPLALPLDAGEYCVPRGNRRRFRVRQPIL
10 20 30 40 50 60
70 80 90 100 110
pF1KE6 NFRWAIPNRHIEHNEAR---DDVERFVGQMMEIKRKTREQQMRHYMRFQTPEP---DNHY
..:: . .: . . .:: ...::. .. .. .: ::.:. : .: . .: :.:
NP_060 QYRWDMMHR-LGEPQARMREENMERIGEEVRQLMEKLREKQLSHSLRAVSTDPPHHDHHD
70 80 90 100 110
120
pF1KE6 DFCLIP
.:::.:
NP_060 EFCLMP
120
>>NP_116010 (OMIM: 300691) protein BEX2 isoform 3 [Homo (128 aa)
initn: 264 init1: 88 opt: 241 Z-score: 298.3 bits: 60.7 E(85289): 7.1e-10
Smith-Waterman score: 241; 38.0% identity (65.1% similar) in 129 aa overlap (1-120:1-128)
10 20 30 40 50
pF1KE6 MESKEELAANNLNGENAQQENEGG---EQAPTQNEEESRHLGGGEGQKPGGNIRRGRVRR
:::::: : ::: ::..:::. ::. ...: . :. .: : :: :: :::.
NP_116 MESKEERALNNLIVENVNQENDEKDEKEQVANKGEPLALPLNVSEYCVPRGNRRRFRVRQ
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE6 LVPNFRWAIPNRHIEHNEAR---DDVERFVGQMMEIKRKTREQQMRHYMRFQTPEP---D
. ..:: : .: . . .:: ...::. .. .. .: ::.:. : .: . .: :
NP_116 PILQYRWDIMHR-LGEPQARMREENMERIGEEVRQLMEKLREKQLSHSLRAVSTDPPHHD
70 80 90 100 110
120
pF1KE6 NHYDFCLIP
.: .:::.:
NP_116 HHDEFCLMP
120
120 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 09:57:25 2016 done: Tue Nov 8 09:57:26 2016
Total Scan time: 3.490 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]