FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8239, 141 aa 1>>>pF1KB8239 141 - 141 aa - 141 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2851+/-0.000368; mu= 12.4308+/- 0.023 mean_var=76.2299+/-15.619, 0's: 0 Z-trim(113.9): 15 B-trim: 794 in 1/49 Lambda= 0.146897 statistics sampled from 23443 (23457) to 23443 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.666), E-opt: 0.2 (0.275), width: 16 Scan time: 4.760 The best scores are: opt bits E(85289) NP_001268226 (OMIM: 605107) endothelial differenti ( 141) 892 197.8 4.7e-51 NP_003783 (OMIM: 605107) endothelial differentiati ( 148) 818 182.2 2.6e-46 NP_694880 (OMIM: 605107) endothelial differentiati ( 139) 816 181.7 3.3e-46 NP_001268228 (OMIM: 605107) endothelial differenti ( 130) 519 118.8 2.8e-27 NP_001268227 (OMIM: 605107) endothelial differenti ( 127) 486 111.8 3.5e-25 >>NP_001268226 (OMIM: 605107) endothelial differentiatio (141 aa) initn: 892 init1: 892 opt: 892 Z-score: 1037.5 bits: 197.8 E(85289): 4.7e-51 Smith-Waterman score: 892; 100.0% identity (100.0% similar) in 141 aa overlap (1-141:1-141) 10 20 30 40 50 60 pF1KB8 MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 LDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQV 70 80 90 100 110 120 130 140 pF1KB8 LGKIERAIDVGTRSARVLRAQ ::::::::::::::::::::: NP_001 LGKIERAIDVGTRSARVLRAQ 130 140 >>NP_003783 (OMIM: 605107) endothelial differentiation-r (148 aa) initn: 818 init1: 818 opt: 818 Z-score: 952.5 bits: 182.2 E(85289): 2.6e-46 Smith-Waterman score: 818; 94.2% identity (96.4% similar) in 137 aa overlap (1-137:1-137) 10 20 30 40 50 60 pF1KB8 MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 LDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 LDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQV 70 80 90 100 110 120 130 140 pF1KB8 LGKIERAIDVGTRSARVLRAQ :::::::: . :. . NP_003 LGKIERAIGLKLRGKDIGKPIEKGPRAK 130 140 >>NP_694880 (OMIM: 605107) endothelial differentiation-r (139 aa) initn: 813 init1: 813 opt: 816 Z-score: 950.6 bits: 181.7 E(85289): 3.3e-46 Smith-Waterman score: 816; 93.5% identity (95.0% similar) in 139 aa overlap (1-139:1-139) 10 20 30 40 50 60 pF1KB8 MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_694 MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 LDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_694 LDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQV 70 80 90 100 110 120 130 140 pF1KB8 LGKIERAIDVGTRSARVLRAQ :::::::: . : .: NP_694 LGKIERAIGECPSTLRRVR 130 >>NP_001268228 (OMIM: 605107) endothelial differentiatio (130 aa) initn: 697 init1: 509 opt: 519 Z-score: 610.8 bits: 118.8 E(85289): 2.8e-27 Smith-Waterman score: 661; 81.0% identity (83.2% similar) in 137 aa overlap (1-137:1-119) 10 20 30 40 50 60 pF1KB8 MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 LDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQV ::::::::::::::::::: ::::::::::::::::::::::: NP_001 LDRETEELHHDRVTLEVGK------------------KINEKPQVIADYESGRAIPNNQV 70 80 90 100 130 140 pF1KB8 LGKIERAIDVGTRSARVLRAQ :::::::: . :. . NP_001 LGKIERAIGLKLRGKDIGKPIEKGPRAK 110 120 130 >>NP_001268227 (OMIM: 605107) endothelial differentiatio (127 aa) initn: 674 init1: 486 opt: 486 Z-score: 573.1 bits: 111.8 E(85289): 3.5e-25 Smith-Waterman score: 636; 78.8% identity (81.0% similar) in 137 aa overlap (1-137:1-116) 10 20 30 40 50 60 pF1KB8 MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 LDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQV :::::::::::::::: ::::::::::::::::::::::: NP_001 LDRETEELHHDRVTLE---------------------KINEKPQVIADYESGRAIPNNQV 70 80 90 130 140 pF1KB8 LGKIERAIDVGTRSARVLRAQ :::::::: . :. . NP_001 LGKIERAIGLKLRGKDIGKPIEKGPRAK 100 110 120 141 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 04:15:13 2016 done: Mon Nov 7 04:15:14 2016 Total Scan time: 4.760 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]