FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8239, 141 aa
  1>>>pF1KB8239 141 - 141 aa - 141 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7046+/-0.00085; mu= 9.8961+/- 0.051
 mean_var=71.5689+/-14.398, 0's: 0 Z-trim(106.9): 12  B-trim: 352 in 1/47
 Lambda= 0.151604
 statistics sampled from 9257 (9264) to 9257 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.285), width:  16
 Scan time:  1.690

The best scores are:                                      opt bits E(32554)
CCDS65193.1 EDF1 gene_id:8721|Hs108|chr9           ( 141)  892 203.7 3.1e-53
CCDS7011.1 EDF1 gene_id:8721|Hs108|chr9            ( 148)  818 187.5 2.4e-48
CCDS7012.1 EDF1 gene_id:8721|Hs108|chr9            ( 139)  816 187.1 3.1e-48


>>CCDS65193.1 EDF1 gene_id:8721|Hs108|chr9                (141 aa)
 initn: 892 init1: 892 opt: 892  Z-score: 1069.1  bits: 203.7 E(32554): 3.1e-53
Smith-Waterman score: 892; 100.0% identity (100.0% similar) in 141 aa overlap (1-141:1-141)

               10        20        30        40        50        60
pF1KB8 MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 LDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQV
               70        80        90       100       110       120

              130       140 
pF1KB8 LGKIERAIDVGTRSARVLRAQ
       :::::::::::::::::::::
CCDS65 LGKIERAIDVGTRSARVLRAQ
              130       140 

>>CCDS7011.1 EDF1 gene_id:8721|Hs108|chr9                 (148 aa)
 initn: 818 init1: 818 opt: 818  Z-score: 981.3  bits: 187.5 E(32554): 2.4e-48
Smith-Waterman score: 818; 94.2% identity (96.4% similar) in 137 aa overlap (1-137:1-137)

               10        20        30        40        50        60
pF1KB8 MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 LDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQV
               70        80        90       100       110       120

              130       140        
pF1KB8 LGKIERAIDVGTRSARVLRAQ       
       :::::::: .  :.  .           
CCDS70 LGKIERAIGLKLRGKDIGKPIEKGPRAK
              130       140        

>>CCDS7012.1 EDF1 gene_id:8721|Hs108|chr9                 (139 aa)
 initn: 813 init1: 813 opt: 816  Z-score: 979.4  bits: 187.1 E(32554): 3.1e-48
Smith-Waterman score: 816; 93.5% identity (95.0% similar) in 139 aa overlap (1-139:1-139)

               10        20        30        40        50        60
pF1KB8 MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 LDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQV
               70        80        90       100       110       120

              130       140 
pF1KB8 LGKIERAIDVGTRSARVLRAQ
       ::::::::     . : .:  
CCDS70 LGKIERAIGECPSTLRRVR  
              130           




141 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 04:15:13 2016 done: Mon Nov  7 04:15:13 2016
 Total Scan time:  1.690 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]