FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1115, 190 aa 1>>>pF1KE1115 190 - 190 aa - 190 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3477+/-0.000351; mu= 12.3265+/- 0.022 mean_var=61.4574+/-12.550, 0's: 0 Z-trim(114.7): 33 B-trim: 402 in 1/51 Lambda= 0.163601 statistics sampled from 24696 (24729) to 24696 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.29), width: 16 Scan time: 5.040 The best scores are: opt bits E(85289) NP_055323 (OMIM: 607750) DNA dC->dU-editing enzyme ( 190) 1374 332.5 2.4e-91 NP_660341 (OMIM: 608993) DNA dC->dU-editing enzyme ( 373) 1067 260.2 2.9e-69 XP_011528296 (OMIM: 608993) PREDICTED: DNA dC->dU- ( 442) 1067 260.2 3.3e-69 NP_689639 (OMIM: 609900) DNA dC->dU-editing enzyme ( 386) 1030 251.5 1.3e-66 XP_016884085 (OMIM: 609900) PREDICTED: DNA dC->dU- ( 455) 1030 251.5 1.4e-66 XP_005261394 (OMIM: 609900) PREDICTED: DNA dC->dU- ( 202) 810 199.4 3e-51 NP_001257340 (OMIM: 607110) DNA dC->dU-editing enz ( 357) 705 174.7 1.4e-43 NP_004891 (OMIM: 607110) DNA dC->dU-editing enzyme ( 382) 705 174.8 1.5e-43 XP_016884131 (OMIM: 608993) PREDICTED: DNA dC->dU- ( 227) 627 156.2 3.4e-38 NP_068594 (OMIM: 607113) DNA dC->dU-editing enzyme ( 384) 513 129.4 6.8e-30 XP_016884392 (OMIM: 607113) PREDICTED: DNA dC->dU- ( 524) 513 129.5 8.9e-30 NP_065712 (OMIM: 605257,605258) single-stranded DN ( 198) 485 122.7 3.7e-28 NP_663745 (OMIM: 607109) DNA dC->dU-editing enzyme ( 199) 417 106.7 2.5e-23 NP_001257335 (OMIM: 607109) DNA dC->dU-editing enz ( 181) 402 103.1 2.7e-22 NP_006780 (OMIM: 604797) C->U-editing enzyme APOBE ( 224) 383 98.7 7.3e-21 XP_006724353 (OMIM: 607113) PREDICTED: DNA dC->dU- ( 317) 378 97.5 2.2e-20 XP_016884393 (OMIM: 607113) PREDICTED: DNA dC->dU- ( 457) 378 97.6 3.1e-20 NP_001317272 (OMIM: 605257,605258) single-stranded ( 188) 365 94.4 1.2e-19 XP_011519075 (OMIM: 605257,605258) PREDICTED: sing ( 145) 359 92.9 2.5e-19 NP_861438 (OMIM: 610976) DNA dC->dU-editing enzyme ( 183) 353 91.5 8.3e-19 NP_001159474 (OMIM: 610976) DNA dC->dU-editing enz ( 182) 352 91.3 9.7e-19 XP_011528294 (OMIM: 610976) PREDICTED: DNA dC->dU- ( 200) 352 91.3 1.1e-18 NP_001159475 (OMIM: 610976) DNA dC->dU-editing enz ( 200) 352 91.3 1.1e-18 XP_011528292 (OMIM: 610976) PREDICTED: DNA dC->dU- ( 203) 352 91.3 1.1e-18 XP_011528293 (OMIM: 610976) PREDICTED: DNA dC->dU- ( 203) 352 91.3 1.1e-18 NP_001635 (OMIM: 600130) C->U-editing enzyme APOBE ( 236) 283 75.1 9.7e-14 NP_001291495 (OMIM: 600130) C->U-editing enzyme AP ( 236) 283 75.1 9.7e-14 NP_005880 (OMIM: 600130) C->U-editing enzyme APOBE ( 191) 279 74.1 1.6e-13 NP_001159476 (OMIM: 610976) DNA dC->dU-editing enz ( 154) 266 71.0 1.1e-12 NP_001006667 (OMIM: 608993) DNA dC->dU-editing enz ( 101) 131 39.0 0.0029 XP_016884132 (OMIM: 608993) PREDICTED: DNA dC->dU- ( 101) 131 39.0 0.0029 >>NP_055323 (OMIM: 607750) DNA dC->dU-editing enzyme APO (190 aa) initn: 1374 init1: 1374 opt: 1374 Z-score: 1760.8 bits: 332.5 E(85289): 2.4e-91 Smith-Waterman score: 1374; 100.0% identity (100.0% similar) in 190 aa overlap (1-190:1-190) 10 20 30 40 50 60 pF1KE1 MNPQIRNPMKAMYPGTFYFQFKNLWEANDRNETWLCFTVEGIKRRSVVSWKTGVFRNQVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 MNPQIRNPMKAMYPGTFYFQFKNLWEANDRNETWLCFTVEGIKRRSVVSWKTGVFRNQVD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 SETHCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIFT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 SETHCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIFT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ARLYYFQYPCYQEGLRSLSQEGVAVEIMDYEDFKYCWENFVYNDNEPFKPWKGLKTNFRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 ARLYYFQYPCYQEGLRSLSQEGVAVEIMDYEDFKYCWENFVYNDNEPFKPWKGLKTNFRL 130 140 150 160 170 180 190 pF1KE1 LKRRLRESLQ :::::::::: NP_055 LKRRLRESLQ 190 >>NP_660341 (OMIM: 608993) DNA dC->dU-editing enzyme APO (373 aa) initn: 1651 init1: 1065 opt: 1067 Z-score: 1364.6 bits: 260.2 E(85289): 2.9e-69 Smith-Waterman score: 1067; 79.0% identity (89.8% similar) in 186 aa overlap (5-190:188-373) 10 20 30 pF1KE1 MNPQIRNPMKAMYPGTFYFQFKNLWEANDRNETW .::::.:::: :::.:::: .: :::.: NP_660 NFVYSEGQPFMPWYKFDDNYAFLHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESW 160 170 180 190 200 210 40 50 60 70 80 90 pF1KE1 LCFTVEGIKRRSVVSWKTGVFRNQVDSETHCHAERCFLSWFCDDILSPNTKYQVTWYTSW ::::.: .:..: :::: :::::::: :::::::::::::::::::::::.:.::::::: NP_660 LCFTMEVVKHHSPVSWKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSW 220 230 240 250 260 270 100 110 120 130 140 150 pF1KE1 SPCPDCAGEVAEFLARHSNVNLTIFTARLYYFQYPCYQEGLRSLSQEGVAVEIMDYEDFK ::::.::::::::::::::::::::::::::: ::::::::::::..:::: :.::: NP_660 SPCPECAGEVAEFLARHSNVNLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFK 280 290 300 310 320 330 160 170 180 190 pF1KE1 YCWENFVYNDNEPFKPWKGLKTNFRLLKRRLRESLQ ::::::::::.:::::::::: :: .: .:.: :. NP_660 YCWENFVYNDDEPFKPWKGLKYNFLFLDSKLQEILE 340 350 360 370 >-- initn: 600 init1: 503 opt: 624 Z-score: 799.5 bits: 155.6 E(85289): 8.6e-38 Smith-Waterman score: 624; 47.6% identity (71.7% similar) in 187 aa overlap (1-187:1-186) 10 20 30 40 50 60 pF1KE1 MNPQIRNPMKAMYPGTFYFQFKNLWEANDRNETWLCFTVEGIKRRSVVSWKTGVFRNQVD :.:..:: .. :: :: ..: : . :: .:::. :. : : . .::.:: NP_660 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVK-TKGPSRPRLDAKIFRGQVY 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 SETHCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIFT :. . ::: ::::::: . : .:.::..::.:::::....:::::.: ::.::: . NP_660 SQPEHHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLAEHPNVTLTISA 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE1 ARLYYFQYPCYQEGLRSLSQEGVAVEIMDYEDFKYCWENFVYNDNEPFKPWKGLKTNFRL :::::. :...: ::: :. :.::: :.: ::::::::....:: :: . :. . NP_660 ARLYYYWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPFMPWYKFDDNYAF 120 130 140 150 160 170 190 pF1KE1 LKRRLRESLQ :.: :.: NP_660 LHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGVFR 180 190 200 210 220 230 >>XP_011528296 (OMIM: 608993) PREDICTED: DNA dC->dU-edit (442 aa) initn: 1634 init1: 1065 opt: 1067 Z-score: 1363.4 bits: 260.2 E(85289): 3.3e-69 Smith-Waterman score: 1067; 79.0% identity (89.8% similar) in 186 aa overlap (5-190:257-442) 10 20 30 pF1KE1 MNPQIRNPMKAMYPGTFYFQFKNLWEANDRNETW .::::.:::: :::.:::: .: :::.: XP_011 NFVYSEGQPFMPWYKFDDNYAFLHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESW 230 240 250 260 270 280 40 50 60 70 80 90 pF1KE1 LCFTVEGIKRRSVVSWKTGVFRNQVDSETHCHAERCFLSWFCDDILSPNTKYQVTWYTSW ::::.: .:..: :::: :::::::: :::::::::::::::::::::::.:.::::::: XP_011 LCFTMEVVKHHSPVSWKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSW 290 300 310 320 330 340 100 110 120 130 140 150 pF1KE1 SPCPDCAGEVAEFLARHSNVNLTIFTARLYYFQYPCYQEGLRSLSQEGVAVEIMDYEDFK ::::.::::::::::::::::::::::::::: ::::::::::::..:::: :.::: XP_011 SPCPECAGEVAEFLARHSNVNLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFK 350 360 370 380 390 400 160 170 180 190 pF1KE1 YCWENFVYNDNEPFKPWKGLKTNFRLLKRRLRESLQ ::::::::::.:::::::::: :: .: .:.: :. XP_011 YCWENFVYNDDEPFKPWKGLKYNFLFLDSKLQEILE 410 420 430 440 >-- initn: 605 init1: 375 opt: 474 Z-score: 607.0 bits: 120.3 E(85289): 4.5e-27 Smith-Waterman score: 474; 43.3% identity (66.7% similar) in 171 aa overlap (1-171:1-170) 10 20 30 40 50 60 pF1KE1 MNPQIRNPMKAMYPGTFYFQFKNLWEANDRNETWLCFTVEGIKRRSVVSWKTGVFRNQVD :.:..:: .. :: :: ..: : . :: .:::. :. : : . .::.:: XP_011 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVK-TKGPSRPRLDAKIFRGQVY 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 SETHCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIFT :. . ::: ::::::: . : .:.::..::.:::::....:::::.: ::.::: . XP_011 SQPEHHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLAEHPNVTLTISA 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE1 ARLYYFQYPCYQEGLRSLSQEGVAVEIMDYEDFKYCWENFVYNDNEPFKPWKGLKTNFRL :::::. :...: ::: :. :.::: : .. .. : . : : XP_011 ARLYYYWERDYRRALCRLSQAGARVKIMDDEGERWRGQGSVSGRNSMKDGWICNAMAGGV 120 130 140 150 160 170 190 pF1KE1 LKRRLRESLQ XP_011 PGQPAGAGPALTATDSQETRPGSAGPGSGQSLTASCLFVSEFAYCWENFVYSEGQPFMPW 180 190 200 210 220 230 >-- initn: 141 init1: 125 opt: 155 Z-score: 200.1 bits: 45.0 E(85289): 0.00021 Smith-Waterman score: 155; 50.0% identity (77.8% similar) in 36 aa overlap (152-187:220-255) 130 140 150 160 170 180 pF1KE1 RLYYFQYPCYQEGLRSLSQEGVAVEIMDYEDFKYCWENFVYNDNEPFKPWKGLKTNFRLL .: ::::::::....:: :: . :. .: XP_011 LTATDSQETRPGSAGPGSGQSLTASCLFVSEFAYCWENFVYSEGQPFMPWYKFDDNYAFL 190 200 210 220 230 240 190 pF1KE1 KRRLRESLQ .: :.: XP_011 HRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGVFRN 250 260 270 280 290 300 >>NP_689639 (OMIM: 609900) DNA dC->dU-editing enzyme APO (386 aa) initn: 1030 init1: 1030 opt: 1030 Z-score: 1317.2 bits: 251.5 E(85289): 1.3e-66 Smith-Waterman score: 1030; 78.0% identity (88.7% similar) in 186 aa overlap (5-190:201-386) 10 20 30 pF1KE1 MNPQIRNPMKAMYPGTFYFQFKNLWEANDRNETW .::::.:::: :::.:::: .: :::.: NP_689 NFVCNEGQPFMPWYKFDDNYASLHRTLKEILRNPMEAMYPHIFYFHFKNLLKACGRNESW 180 190 200 210 220 230 40 50 60 70 80 90 pF1KE1 LCFTVEGIKRRSVVSWKTGVFRNQVDSETHCHAERCFLSWFCDDILSPNTKYQVTWYTSW ::::.: :..:.: : :::::::: :::::::::::::::::::::::.:.::::::: NP_689 LCFTMEVTKHHSAVFRKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSW 240 250 260 270 280 290 100 110 120 130 140 150 pF1KE1 SPCPDCAGEVAEFLARHSNVNLTIFTARLYYFQYPCYQEGLRSLSQEGVAVEIMDYEDFK ::::.:::::::::::::::::::::::: :: ::::: ::::::..:.:: :.:: NP_689 SPCPECAGEVAEFLARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQEGASVKIMGYKDFV 300 310 320 330 340 350 160 170 180 190 pF1KE1 YCWENFVYNDNEPFKPWKGLKTNFRLLKRRLRESLQ ::.::::.:.:::::::::.:::::::::::: :: NP_689 SCWKNFVYSDDEPFKPWKGLQTNFRLLKRRLREILQ 360 370 380 >-- initn: 625 init1: 442 opt: 627 Z-score: 803.1 bits: 156.3 E(85289): 5.4e-38 Smith-Waterman score: 627; 48.5% identity (67.5% similar) in 200 aa overlap (1-187:1-199) 10 20 30 40 50 pF1KE1 MNPQIRNPMKAMYPGTFYFQFKNLWEANDRNETWLCFTVEGIKR-RSVVSWKTGVFRNQV :::::::::. :: ::: .:.: :. ::::. :. ::: :: . : :::::. : NP_689 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVK-IKRGRSNLLWDTGVFRGPV 10 20 30 40 50 60 70 80 90 100 pF1KE1 DSETHC------------HAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPDCAGEVAEF . . ::: ::::::: . : : ..:.::..::.:: :. .:..: NP_689 LPKRQSNHRQEVYFRFENHAEMCFLSWFCGNRLPANRRFQITWFVSWNPCLPCVVKVTKF 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE1 LARHSNVNLTIFTARLYYFQYPCYQEGLRSLSQEGVAVEIMDYEDFKYCWENFVYNDNEP ::.: ::.::: .:::::.. .. : : . :. :.::::::: ::::::: :...: NP_689 LAEHPNVTLTISAARLYYYRDRDWRWVLLRLHKAGARVKIMDYEDFAYCWENFVCNEGQP 120 130 140 150 160 170 170 180 190 pF1KE1 FKPWKGLKTNFRLLKRRLRESLQ : :: . :. :.: :.: NP_689 FMPWYKFDDNYASLHRTLKEILRNPMEAMYPHIFYFHFKNLLKACGRNESWLCFTMEVTK 180 190 200 210 220 230 >>XP_016884085 (OMIM: 609900) PREDICTED: DNA dC->dU-edit (455 aa) initn: 1030 init1: 1030 opt: 1030 Z-score: 1316.0 bits: 251.5 E(85289): 1.4e-66 Smith-Waterman score: 1030; 78.0% identity (88.7% similar) in 186 aa overlap (5-190:270-455) 10 20 30 pF1KE1 MNPQIRNPMKAMYPGTFYFQFKNLWEANDRNETW .::::.:::: :::.:::: .: :::.: XP_016 NFVCNEGQPFMPWYKFDDNYASLHRTLKEILRNPMEAMYPHIFYFHFKNLLKACGRNESW 240 250 260 270 280 290 40 50 60 70 80 90 pF1KE1 LCFTVEGIKRRSVVSWKTGVFRNQVDSETHCHAERCFLSWFCDDILSPNTKYQVTWYTSW ::::.: :..:.: : :::::::: :::::::::::::::::::::::.:.::::::: XP_016 LCFTMEVTKHHSAVFRKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSW 300 310 320 330 340 350 100 110 120 130 140 150 pF1KE1 SPCPDCAGEVAEFLARHSNVNLTIFTARLYYFQYPCYQEGLRSLSQEGVAVEIMDYEDFK ::::.:::::::::::::::::::::::: :: ::::: ::::::..:.:: :.:: XP_016 SPCPECAGEVAEFLARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQEGASVKIMGYKDFV 360 370 380 390 400 410 160 170 180 190 pF1KE1 YCWENFVYNDNEPFKPWKGLKTNFRLLKRRLRESLQ ::.::::.:.:::::::::.:::::::::::: :: XP_016 SCWKNFVYSDDEPFKPWKGLQTNFRLLKRRLREILQ 420 430 440 450 >-- initn: 611 init1: 316 opt: 475 Z-score: 608.1 bits: 120.5 E(85289): 3.9e-27 Smith-Waterman score: 475; 47.6% identity (66.5% similar) in 164 aa overlap (1-151:1-163) 10 20 30 40 50 pF1KE1 MNPQIRNPMKAMYPGTFYFQFKNLWEANDRNETWLCFTVEGIKR-RSVVSWKTGVFRNQV :::::::::. :: ::: .:.: :. ::::. :. ::: :: . : :::::. : XP_016 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVK-IKRGRSNLLWDTGVFRGPV 10 20 30 40 50 60 70 80 90 100 pF1KE1 DSETHC------------HAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPDCAGEVAEF . . ::: ::::::: . : : ..:.::..::.:: :. .:..: XP_016 LPKRQSNHRQEVYFRFENHAEMCFLSWFCGNRLPANRRFQITWFVSWNPCLPCVVKVTKF 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE1 LARHSNVNLTIFTARLYYFQYPCYQEGLRSLSQEGVAVEIMDYEDFKYCWENFVYNDNEP ::.: ::.::: .:::::.. .. : : . :. :.::::: XP_016 LAEHPNVTLTISAARLYYYRDRDWRWVLLRLHKAGARVKIMDYEGERCRGQGSMTGRNSL 120 130 140 150 160 170 170 180 190 pF1KE1 FKPWKGLKTNFRLLKRRLRESLQ XP_016 RDGWICNAMAGGVPGQPAGVGLALIATDSQETRPGRAGPGSGESLSASHLFISDFAYCWE 180 190 200 210 220 230 >-- initn: 142 init1: 126 opt: 154 Z-score: 198.6 bits: 44.7 E(85289): 0.00025 Smith-Waterman score: 154; 42.9% identity (67.3% similar) in 49 aa overlap (139-187:220-268) 110 120 130 140 150 160 pF1KE1 ARHSNVNLTIFTARLYYFQYPCYQEGLRSLSQEGVAVEIMDYEDFKYCWENFVYNDNEPF : :.... . :: ::::::: :...:: XP_016 GGVPGQPAGVGLALIATDSQETRPGRAGPGSGESLSASHLFISDFAYCWENFVCNEGQPF 190 200 210 220 230 240 170 180 190 pF1KE1 KPWKGLKTNFRLLKRRLRESLQ :: . :. :.: :.: XP_016 MPWYKFDDNYASLHRTLKEILRNPMEAMYPHIFYFHFKNLLKACGRNESWLCFTMEVTKH 250 260 270 280 290 300 >>XP_005261394 (OMIM: 609900) PREDICTED: DNA dC->dU-edit (202 aa) initn: 799 init1: 799 opt: 810 Z-score: 1041.0 bits: 199.4 E(85289): 3e-51 Smith-Waterman score: 952; 70.4% identity (80.3% similar) in 203 aa overlap (1-190:1-202) 10 20 30 40 50 pF1KE1 MNPQIRNPMKAMYPGTFYFQFKNLWEANDRNETWLCFTVEGIKR-RSVVSWKTGVFRN-- :::::::::. :: ::: .:.: :. ::::. :. ::: :: . : :::::. XP_005 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVK-IKRGRSNLLWDTGVFRGPV 10 20 30 40 50 60 70 80 90 100 pF1KE1 ----------QVDSETHCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPDCAGEVAEF .:: :::::::::::::::::::::::.:.:::::::::::.:::::::: XP_005 LPKRQSNHRQEVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEF 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE1 LARHSNVNLTIFTARLYYFQYPCYQEGLRSLSQEGVAVEIMDYEDFKYCWENFVYNDNEP :::::::::::::::: :: ::::: ::::::..:.:: :.:: ::.::::.:.:: XP_005 LARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQEGASVKIMGYKDFVSCWKNFVYSDDEP 120 130 140 150 160 170 170 180 190 pF1KE1 FKPWKGLKTNFRLLKRRLRESLQ :::::::.:::::::::::: :: XP_005 FKPWKGLQTNFRLLKRRLREILQ 180 190 200 >>NP_001257340 (OMIM: 607110) DNA dC->dU-editing enzyme (357 aa) initn: 671 init1: 671 opt: 705 Z-score: 903.1 bits: 174.7 E(85289): 1.4e-43 Smith-Waterman score: 705; 53.4% identity (74.3% similar) in 191 aa overlap (1-190:1-190) 10 20 30 40 50 pF1KE1 MNPQIRNPMKAMYPGTFYFQFKNLWEANDRNETWLCFTVEGIKR-RSVVSWKTGVFRNQV :::::::::. :: ::: .:.: :. ::::. :. ::: :: . : :::::.:: NP_001 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVK-IKRGRSNLLWDTGVFRGQV 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 DSETHCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIF . . ::: ::::::: . : .:.::..::.:::::....::::..: ::.::: NP_001 YFKPQYHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTIS 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 TARLYYFQYPCYQEGLRSLSQEGVAVEIMDYEDFKYCWENFVYNDNEPFKPWKGLKTNFR .:::::. :...: ::: :. :.:::::.: :::::::::... : :: . :. NP_001 AARLYYYWERDYRRALCRLSQAGARVKIMDYEEFAYCWENFVYNEGQQFMPWYKFDENYA 120 130 140 150 160 170 180 190 pF1KE1 LLKRRLRESLQ .:.: :.: :. NP_001 FLHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHMGFLC 180 190 200 210 220 230 >-- initn: 426 init1: 212 opt: 381 Z-score: 489.8 bits: 98.3 E(85289): 1.5e-20 Smith-Waterman score: 419; 40.3% identity (65.2% similar) in 181 aa overlap (12-190:193-353) 10 20 30 40 pF1KE1 MNPQIRNPMKAMYPGTFYFQFKNLWEANDRNETWLCFTVEG : : :: :.:.: . : .:.::. :: NP_001 NEGQQFMPWYKFDENYAFLHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVE- 170 180 190 200 210 220 50 60 70 80 90 pF1KE1 IKRRSVVSWKTGVFRNQVDSETHCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPD-- : . .: :. .: : ....:.. :.: :.:::. ::::: . NP_001 --RLDNGTW---VLMDQ-------H-----MGFLCNE-LDPAQIYRVTWFISWSPCFSWG 230 240 250 260 100 110 120 130 140 150 pF1KE1 CAGEVAEFLARHSNVNLTIFTARLYYFQYPCYQEGLRSLSQEGVAVEIMDYEDFKYCWEN ::::: :: ....: : ::.::.: .. : :.:.:. : . :. : :: :..:.:::.. NP_001 CAGEVRAFLQENTHVRLRIFAARIYDYD-PLYKEALQMLRDAGAQVSIMTYDEFEYCWDT 270 280 290 300 310 320 160 170 180 190 pF1KE1 FVYNDNEPFKPWKGLKTNFRLLKRRLRESLQ ::: .. ::.:: ::. . . :. ::: :: NP_001 FVYRQGCPFQPWDGLEEHSQALSGRLRAILQNQGN 330 340 350 >>NP_004891 (OMIM: 607110) DNA dC->dU-editing enzyme APO (382 aa) initn: 671 init1: 671 opt: 705 Z-score: 902.7 bits: 174.8 E(85289): 1.5e-43 Smith-Waterman score: 705; 53.4% identity (74.3% similar) in 191 aa overlap (1-190:1-190) 10 20 30 40 50 pF1KE1 MNPQIRNPMKAMYPGTFYFQFKNLWEANDRNETWLCFTVEGIKR-RSVVSWKTGVFRNQV :::::::::. :: ::: .:.: :. ::::. :. ::: :: . : :::::.:: NP_004 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVK-IKRGRSNLLWDTGVFRGQV 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 DSETHCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIF . . ::: ::::::: . : .:.::..::.:::::....::::..: ::.::: NP_004 YFKPQYHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTIS 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 TARLYYFQYPCYQEGLRSLSQEGVAVEIMDYEDFKYCWENFVYNDNEPFKPWKGLKTNFR .:::::. :...: ::: :. :.:::::.: :::::::::... : :: . :. NP_004 AARLYYYWERDYRRALCRLSQAGARVKIMDYEEFAYCWENFVYNEGQQFMPWYKFDENYA 120 130 140 150 160 170 180 190 pF1KE1 LLKRRLRESLQ .:.: :.: :. NP_004 FLHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHMGFLC 180 190 200 210 220 230 >-- initn: 449 init1: 212 opt: 433 Z-score: 555.7 bits: 110.6 E(85289): 3.3e-24 Smith-Waterman score: 433; 40.4% identity (64.9% similar) in 188 aa overlap (12-190:193-378) 10 20 30 40 pF1KE1 MNPQIRNPMKAMYPGTFYFQFKNLWEANDRNETWLCFTVEG : : :: :.:.: . : .:.::. :: NP_004 NEGQQFMPWYKFDENYAFLHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVER 170 180 190 200 210 220 50 60 70 80 90 pF1KE1 IKRRSVV--SWKTGVFRNQVDSETHC-----HAERCFLSWFCDDILSPNTKYQVTWYTSW . . : . . : . :.. .. : ::: ::. . :.: :.:::. :: NP_004 LDNGTWVLMDQHMGFLCNEA-KNLLCGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISW 230 240 250 260 270 280 100 110 120 130 140 150 pF1KE1 SPCPD--CAGEVAEFLARHSNVNLTIFTARLYYFQYPCYQEGLRSLSQEGVAVEIMDYED ::: . ::::: :: ....: : ::.::.: .. : :.:.:. : . :. : :: :.. NP_004 SPCFSWGCAGEVRAFLQENTHVRLRIFAARIYDYD-PLYKEALQMLRDAGAQVSIMTYDE 290 300 310 320 330 340 160 170 180 190 pF1KE1 FKYCWENFVYNDNEPFKPWKGLKTNFRLLKRRLRESLQ :.:::..::: .. ::.:: ::. . . :. ::: :: NP_004 FEYCWDTFVYRQGCPFQPWDGLEEHSQALSGRLRAILQNQGN 350 360 370 380 >>XP_016884131 (OMIM: 608993) PREDICTED: DNA dC->dU-edit (227 aa) initn: 600 init1: 503 opt: 627 Z-score: 806.7 bits: 156.2 E(85289): 3.4e-38 Smith-Waterman score: 627; 47.4% identity (71.6% similar) in 190 aa overlap (1-190:1-189) 10 20 30 40 50 60 pF1KE1 MNPQIRNPMKAMYPGTFYFQFKNLWEANDRNETWLCFTVEGIKRRSVVSWKTGVFRNQVD :.:..:: .. :: :: ..: : . :: .:::. :. : : . .::.:: XP_016 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVK-TKGPSRPRLDAKIFRGQVY 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 SETHCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIFT :. . ::: ::::::: . : .:.::..::.:::::....:::::.: ::.::: . XP_016 SQPEHHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLAEHPNVTLTISA 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE1 ARLYYFQYPCYQEGLRSLSQEGVAVEIMDYEDFKYCWENFVYNDNEPFKPWKGLKTNFRL :::::. :...: ::: :. :.::: :.: ::::::::....:: :: . :. . XP_016 ARLYYYWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPFMPWYKFDDNYAF 120 130 140 150 160 170 190 pF1KE1 LKRRLRESLQ :.: :.: :. XP_016 LHRTLKEILRATSIHLRGRPPHSLGSPTWLLPSPWHNRICHKTGRKWA 180 190 200 210 220 >>NP_068594 (OMIM: 607113) DNA dC->dU-editing enzyme APO (384 aa) initn: 478 init1: 275 opt: 513 Z-score: 657.7 bits: 129.4 E(85289): 6.8e-30 Smith-Waterman score: 513; 43.6% identity (67.2% similar) in 195 aa overlap (1-190:1-194) 10 20 30 40 50 60 pF1KE1 MNPQIRNPMKAMYPGTFYFQFKNLWEANDRNETWLCFTVEGIKRRSVVSWKTGVFRNQVD :.:..:: .. :: :: ..: : . :: .:::. :. : : . .::.:: NP_068 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVK-TKGPSRPPLDAKIFRGQVY 10 20 30 40 50 70 80 90 100 110 pF1KE1 SETHCHAERCFLSWFCD-DILSPNTKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIF :: . : : :. :: : . .:.:::: ::::: :. ..: :::. .:.:::: NP_068 SELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTIF 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 TARLYYFQYPCYQEGLRSLSQ--EG--VAVEIMDYEDFKYCWENFVYNDNEPFKPWKGLK .:::::: : :::.:::: : .: ....::.:..:..:: .:::.. : :.::..: NP_068 VARLYYFWDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNNLP 120 130 140 150 160 170 180 190 pF1KE1 TNFRLLKRRLRESLQ . ::. : : :. NP_068 KYYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQRR 180 190 200 210 220 230 >-- initn: 478 init1: 205 opt: 455 Z-score: 583.7 bits: 115.7 E(85289): 8.9e-26 Smith-Waterman score: 455; 41.4% identity (67.2% similar) in 186 aa overlap (11-190:196-380) 10 20 30 40 pF1KE1 MNPQIRNPMKAMYPGTFYFQFKNLWEANDRNETWLCFTVE .: : :: :.:.: . :.::.::. :: NP_068 YSQRELFEPWNNLPKYYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVE 170 180 190 200 210 220 50 60 70 80 90 pF1KE1 GIKRRSVV--SWKTGVFRNQVDSETHC----HAERCFLSWFCDDILSPNTKYQVTWYTSW .. . : . . : . ::. . ::: :::. . :. . :.:: .::: NP_068 RMHNDTWVLLNQRRGFLCNQAPHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSW 230 240 250 260 270 280 100 110 120 130 140 150 pF1KE1 SPCPDCAGEVAEFLARHSNVNLTIFTARLYYFQYPCYQEGLRSLSQEGVAVEIMDYEDFK ::: .:: :.:.:......:.: :::::.: : : :::::.:.. :. . :: : .:: NP_068 SPCFSCAQEMAKFISKNKHVSLCIFTARIYDDQGRC-QEGLRTLAEAGAKISIMTYSEFK 290 300 310 320 330 340 160 170 180 190 pF1KE1 YCWENFVYNDNEPFKPWKGLKTNFRLLKRRLRESLQ .::..:: ... ::.:: :: . . :. ::: :: NP_068 HCWDTFVDHQGCPFQPWDGLDEHSQDLSGRLRAILQNQEN 350 360 370 380 190 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 04:37:10 2016 done: Mon Nov 7 04:37:11 2016 Total Scan time: 5.040 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]