Result of FASTA (ccds) for
pFN21AE0553
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0553, 357 aa
1>>>pF1KE0553 357 - 357 aa - 357 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1683+/-0.00094; mu= 16.6161+/- 0.056
mean_var=60.4073+/-12.144, 0's: 0 Z-trim(105.0): 30 B-trim: 0 in 0/52
Lambda= 0.165017
statistics sampled from 8190 (8215) to 8190 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.62), E-opt: 0.2 (0.252), width: 16
Scan time: 1.980
The best scores are: opt bits E(32554)
CCDS58807.1 APOBEC3B gene_id:9582|Hs108|chr22 ( 357) 2581 623.0 1.2e-178
CCDS13982.1 APOBEC3B gene_id:9582|Hs108|chr22 ( 382) 1746 424.3 8.5e-119
CCDS33648.1 APOBEC3F gene_id:200316|Hs108|chr22 ( 373) 1200 294.3 1.1e-79
CCDS46709.1 APOBEC3D gene_id:140564|Hs108|chr22 ( 386) 822 204.3 1.4e-52
CCDS13981.1 APOBEC3A gene_id:200315|Hs108|chr22 ( 199) 804 199.9 1.6e-51
CCDS13983.1 APOBEC3C gene_id:27350|Hs108|chr22 ( 190) 710 177.5 8.2e-45
CCDS13984.1 APOBEC3G gene_id:60489|Hs108|chr22 ( 384) 524 133.4 3.2e-31
CCDS41747.1 AICDA gene_id:57379|Hs108|chr12 ( 198) 355 93.0 2.4e-19
CCDS54531.1 APOBEC3H gene_id:164668|Hs108|chr22 ( 182) 336 88.4 5e-18
CCDS13985.1 APOBEC3H gene_id:164668|Hs108|chr22 ( 183) 336 88.4 5.1e-18
CCDS54530.1 APOBEC3H gene_id:164668|Hs108|chr22 ( 200) 336 88.5 5.5e-18
CCDS4848.1 APOBEC2 gene_id:10930|Hs108|chr6 ( 224) 335 88.2 7.1e-18
CCDS81662.1 AICDA gene_id:57379|Hs108|chr12 ( 188) 313 83.0 2.3e-16
CCDS8579.1 APOBEC1 gene_id:339|Hs108|chr12 ( 236) 310 82.3 4.6e-16
CCDS54532.1 APOBEC3H gene_id:164668|Hs108|chr22 ( 154) 249 67.7 7.5e-12
CCDS33649.1 APOBEC3F gene_id:200316|Hs108|chr22 ( 101) 233 63.8 7.3e-11
>>CCDS58807.1 APOBEC3B gene_id:9582|Hs108|chr22 (357 aa)
initn: 2581 init1: 2581 opt: 2581 Z-score: 3321.1 bits: 623.0 E(32554): 1.2e-178
Smith-Waterman score: 2581; 99.4% identity (99.7% similar) in 357 aa overlap (1-357:1-357)
10 20 30 40 50 60
pF1KE0 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 FEPQYHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTISA
:.::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 FKPQYHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTISA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 ARLYYYWERDYRRALCRLSQAGARVKIMDYEEFAYCWENFVYNEGQQFMPWYKFDENYAF
::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
CCDS58 ARLYYYWERDYRRALCRLSQAGARVTIMDYEEFAYCWENFVYNEGQQFMPWYKFDENYAF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 LHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHMGFLCN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHMGFLCN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 ELDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFAARIYDYDPLYKEALQM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ELDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFAARIYDYDPLYKEALQM
250 260 270 280 290 300
310 320 330 340 350
pF1KE0 LRDAGAQVSIMTYDEFEYCWDTFVYRQGCPFQPWDGLEEHSQALSGRLRAILQNQGN
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LRDAGAQVSIMTYDEFEYCWDTFVYRQGCPFQPWDGLEEHSQALSGRLRAILQNQGN
310 320 330 340 350
>>CCDS13982.1 APOBEC3B gene_id:9582|Hs108|chr22 (382 aa)
initn: 1746 init1: 1746 opt: 1746 Z-score: 2246.3 bits: 424.3 E(32554): 8.5e-119
Smith-Waterman score: 2521; 92.9% identity (93.2% similar) in 382 aa overlap (1-357:1-382)
10 20 30 40 50 60
pF1KE0 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 FEPQYHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTISA
:.::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FKPQYHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTISA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 ARLYYYWERDYRRALCRLSQAGARVKIMDYEEFAYCWENFVYNEGQQFMPWYKFDENYAF
::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
CCDS13 ARLYYYWERDYRRALCRLSQAGARVTIMDYEEFAYCWENFVYNEGQQFMPWYKFDENYAF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 LHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHMGFLCN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHMGFLCN
190 200 210 220 230 240
250 260 270
pF1KE0 E-------------------------LDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQEN
: ::::::::::::::::::::::::::::::::::
CCDS13 EAKNLLCGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQEN
250 260 270 280 290 300
280 290 300 310 320 330
pF1KE0 THVRLRIFAARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYRQGCPFQPWD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 THVRLRIFAARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYRQGCPFQPWD
310 320 330 340 350 360
340 350
pF1KE0 GLEEHSQALSGRLRAILQNQGN
::::::::::::::::::::::
CCDS13 GLEEHSQALSGRLRAILQNQGN
370 380
>>CCDS33648.1 APOBEC3F gene_id:200316|Hs108|chr22 (373 aa)
initn: 1454 init1: 952 opt: 1200 Z-score: 1543.9 bits: 294.3 E(32554): 1.1e-79
Smith-Waterman score: 1504; 59.8% identity (76.6% similar) in 376 aa overlap (1-353:1-373)
10 20 30 40 50 60
pF1KE0 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVY
:.:..:: .:::::::: :: :.::: :. .::::::: : : : :. .::::::
CCDS33 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTK-GPSRPRLDAKIFRGQVY
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 FEPQYHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTISA
.:..:::::::::::::::::::::::::::::::::::::::::::.:::::::::::
CCDS33 SQPEHHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLAEHPNVTLTISA
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE0 ARLYYYWERDYRRALCRLSQAGARVKIMDYEEFAYCWENFVYNEGQQFMPWYKFDENYAF
::::::::::::::::::::::::::::: ::::::::::::.::: ::::::::.::::
CCDS33 ARLYYYWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPFMPWYKFDDNYAF
120 130 140 150 160 170
190 200 210 220 230
pF1KE0 LHRTLKEILRYLMD---PDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGT---W---VLM
:::::::::: :. : : :.:.: . : ...::. .: . . . : :.
CCDS33 LHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGVFR
180 190 200 210 220 230
240 250 260 270
pF1KE0 DQ-----H-------MGFLCNE-LDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHV
.: : ....:.. :.: :.:::. ::::: ::::: :: ....:
CCDS33 NQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPE--CAGEVAEFLARHSNV
240 250 260 270 280 290
280 290 300 310 320 330
pF1KE0 RLRIFAARIYDY-DPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYRQGCPFQPWDGL
: ::.::.: . : :.:.:. : . ::.: :: : .:.:::..::: . ::.:: ::
CCDS33 NLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWKGL
300 310 320 330 340 350
340 350
pF1KE0 EEHSQALSGRLRAILQNQGN
. . :...:. ::.
CCDS33 KYNFLFLDSKLQEILE
360 370
>>CCDS46709.1 APOBEC3D gene_id:140564|Hs108|chr22 (386 aa)
initn: 1076 init1: 749 opt: 822 Z-score: 1057.4 bits: 204.3 E(32554): 1.4e-52
Smith-Waterman score: 1482; 58.8% identity (74.0% similar) in 388 aa overlap (1-353:1-386)
10 20 30 40 50
pF1KE0 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRG---
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVL
10 20 30 40 50 60
60 70 80 90 100
pF1KE0 ---------QVYFEPQYHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFL
.:::. . :::::::::::::.::: . :::::::::.:: ::.:...::
CCDS46 PKRQSNHRQEVYFRFENHAEMCFLSWFCGNRLPANRRFQITWFVSWNPCLPCVVKVTKFL
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE0 SEHPNVTLTISAARLYYYWERDYRRALCRLSQAGARVKIMDYEEFAYCWENFVYNEGQQF
.::::::::::::::::: .::.: .: :: .:::::::::::.::::::::: :::: :
CCDS46 AEHPNVTLTISAARLYYYRDRDWRWVLLRLHKAGARVKIMDYEDFAYCWENFVCNEGQPF
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE0 MPWYKFDENYAFLHRTLKEILRYLMD---PDTFTFNFNNDPLVLRRRQTYLCYEVERLDN
:::::::.::: :::::::::: :. : : :.:.: . : ...::. .: .
CCDS46 MPWYKFDDNYASLHRTLKEILRNPMEAMYPHIFYFHFKNLLKACGRNESWLCFTMEVTKH
190 200 210 220 230 240
230 240 250 260
pF1KE0 GTWVLM-----------DQH-------MGFLCNE-LDPAQIYRVTWFISWSPCFSWGCAG
. :. . : ....:.. :.: :.:::. ::::: :::
CCDS46 HSAVFRKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPE--CAG
250 260 270 280 290
270 280 290 300 310 320
pF1KE0 EVRAFLQENTHVRLRIFAARI-YDYDPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVY
:: :: ....: : ::.::. : .: :.:.: : . ::.:.:: : .: :: .:::
CCDS46 EVAEFLARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQEGASVKIMGYKDFVSCWKNFVY
300 310 320 330 340 350
330 340 350
pF1KE0 RQGCPFQPWDGLEEHSQALSGRLRAILQNQGN
. ::.:: ::. . . :. ::: :::
CCDS46 SDDEPFKPWKGLQTNFRLLKRRLREILQ
360 370 380
>>CCDS13981.1 APOBEC3A gene_id:200315|Hs108|chr22 (199 aa)
initn: 866 init1: 804 opt: 804 Z-score: 1038.6 bits: 199.9 E(32554): 1.6e-51
Smith-Waterman score: 960; 75.6% identity (80.3% similar) in 193 aa overlap (190-357:10-199)
160 170 180 190 200 210
pF1KE0 FVYNEGQQFMPWYKFDENYAFLHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYE
:.:::: :: :::: . :..::::::
CCDS13 MEASPASGPRHLMDPHIFTSNFNNG---IGRHKTYLCYE
10 20 30
220 230 240 250
pF1KE0 VERLDNGTWVLMDQHMGFLCNE-------------------------LDPAQIYRVTWFI
:::::::: : :::: ::: :. :::::::::::::
CCDS13 VERLDNGTSVKMDQHRGFLHNQAKNLLCGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFI
40 50 60 70 80 90
260 270 280 290 300 310
pF1KE0 SWSPCFSWGCAGEVRAFLQENTHVRLRIFAARIYDYDPLYKEALQMLRDAGAQVSIMTYD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SWSPCFSWGCAGEVRAFLQENTHVRLRIFAARIYDYDPLYKEALQMLRDAGAQVSIMTYD
100 110 120 130 140 150
320 330 340 350
pF1KE0 EFEYCWDTFVYRQGCPFQPWDGLEEHSQALSGRLRAILQNQGN
::..:::::: .:::::::::::.:::::::::::::::::::
CCDS13 EFKHCWDTFVDHQGCPFQPWDGLDEHSQALSGRLRAILQNQGN
160 170 180 190
>>CCDS13983.1 APOBEC3C gene_id:27350|Hs108|chr22 (190 aa)
initn: 676 init1: 676 opt: 710 Z-score: 918.0 bits: 177.5 E(32554): 8.2e-45
Smith-Waterman score: 710; 53.9% identity (74.3% similar) in 191 aa overlap (1-190:1-190)
10 20 30 40 50
pF1KE0 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVK-IKRGRSNLLWDTGVFRGQV
:::::::::. :: ::: .:.: :. ::::. :. ::: :: . : :::::.::
CCDS13 MNPQIRNPMKAMYPGTFYFQFKNLWEANDRNETWLCFTVEGIKR-RSVVSWKTGVFRNQV
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 YFEPQYHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTIS
: . ::: ::::::: . : .:.::..::.:::::....::::..: ::.:::
CCDS13 DSETHCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIF
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 AARLYYYWERDYRRALCRLSQAGARVKIMDYEEFAYCWENFVYNEGQQFMPWYKFDENYA
.:::::. :...: ::: :. :.:::::.: :::::::::... : :: . :.
CCDS13 TARLYYFQYPCYQEGLRSLSQEGVAVEIMDYEDFKYCWENFVYNDNEPFKPWKGLKTNFR
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE0 FLHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHMGFLC
.:.: :.: :.
CCDS13 LLKRRLRESLQ
180 190
>>CCDS13984.1 APOBEC3G gene_id:60489|Hs108|chr22 (384 aa)
initn: 1258 init1: 431 opt: 524 Z-score: 674.0 bits: 133.4 E(32554): 3.2e-31
Smith-Waterman score: 1357; 54.0% identity (71.1% similar) in 387 aa overlap (1-357:1-384)
10 20 30 40 50 60
pF1KE0 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVY
:.:..:: .:::::::: :: :.::: :. .::::::: : : : :. .::::::
CCDS13 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTK-GPSRPPLDAKIFRGQVY
10 20 30 40 50
70 80 90 100 110
pF1KE0 FEPQYHAEMCFLSWFCG-NQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTIS
: .:: :: :. :: .: . ...::..::.:: :. .: ::.: :.:::::
CCDS13 SELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTIF
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 AARLYYYWERDYRRALCRLSQA--GAR--VKIMDYEEFAYCWENFVYNEGQQFMPWYKFD
.:::::.:. ::..:: : : : : .:::.:.:: .:: .:::.. . : :: ..
CCDS13 VARLYYFWDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNNLP
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE0 ENYAFLHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHM
. : .:: : ::::. ::: ::::::::.: : :..:::::::::. : ::::..:.
CCDS13 KYYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQRR
180 190 200 210 220 230
240 250 260 270
pF1KE0 GFLCNE-------------------------LDPAQIYRVTWFISWSPCFSWGCAGEVRA
:::::. :: : :::: : ::::::: :: :.
CCDS13 GFLCNQAPHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFS--CAQEMAK
240 250 260 270 280 290
280 290 300 310 320 330
pF1KE0 FLQENTHVRLRIFAARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYRQGCP
:...: :: : ::.::::: . .:.:. : .:::..:::::.::..:::::: .::::
CCDS13 FISKNKHVSLCIFTARIYDDQGRCQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGCP
300 310 320 330 340 350
340 350
pF1KE0 FQPWDGLEEHSQALSGRLRAILQNQGN
:::::::.:::: :::::::::::: :
CCDS13 FQPWDGLDEHSQDLSGRLRAILQNQEN
360 370 380
>>CCDS41747.1 AICDA gene_id:57379|Hs108|chr12 (198 aa)
initn: 382 init1: 262 opt: 355 Z-score: 460.9 bits: 93.0 E(32554): 2.4e-19
Smith-Waterman score: 420; 35.4% identity (63.5% similar) in 192 aa overlap (12-202:6-193)
10 20 30 40 50 60
pF1KE0 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVY
: : : .:.: :: :.::: :: . . ... : : .:..
CCDS41 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDFGYLRNK--
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 FEPQYHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTISA
:.:. :: .. .: .:...:::.::.:: ::. ..:.:: .::..: : .
CCDS41 --NGCHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFT
60 70 80 90 100 110
130 140 150 160 170
pF1KE0 ARLYYYWERDYR-RALCRLSQAGARVKIMDYEEFAYCWENFVYNEGQQFMPWYKFDENYA
::::. .: . ..: :: .::... :: .... :::..:: :. . : : . :: .
CCDS41 ARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENSV
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE0 FLHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHMGFLC
: : :..:: :.. : . :
CCDS41 RLSRQLRRILLPLYEVDDLRDAFRTLGL
180 190
>>CCDS54531.1 APOBEC3H gene_id:164668|Hs108|chr22 (182 aa)
initn: 305 init1: 305 opt: 336 Z-score: 437.1 bits: 88.4 E(32554): 5e-18
Smith-Waterman score: 336; 32.6% identity (61.1% similar) in 190 aa overlap (9-188:1-180)
10 20 30 40 50
pF1KE0 MNPQIRNPMERMYRDTFYDNFENEPILYGRSY----TWLCYEVKIKRGRSNLLWDTGVFR
: . .:: .:.:. : : : . :::.. . : . :
CCDS54 MALLTAETFRLQFNNKRRLR-RPYYPRKALLCYQLTPQNGSTPT-------R
10 20 30 40
60 70 80 90 100 110
pF1KE0 GQVYFEPQY--HAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNV
: ::: . :::.::.. . . : .:.:.: ...:.:: .:. .:..:.. : ..
CCDS54 G--YFENKKKCHAEICFINEIKSMGLDETQCYQVTCYLTWSPCSSCAWELVDFIKAHDHL
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE0 TLTISAARLYYYWERDYRRALCRLSQAGARVKIMDYEEFAYCWENFVYNEGQ-QFMPWY-
.: : :.::::.: . ...: : . . :..: . ::: :::::: .: .: :.
CCDS54 NLGIFASRLYYHWCKPQQKGLRLLCGSQVPVEVMGFPEFADCWENFVDHEKPLSFNPYKM
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE0 --KFDENYAFLHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVL
..:.: ..: :..:
CCDS54 LEELDKNSRAIKRRLERIKS
170 180
>>CCDS13985.1 APOBEC3H gene_id:164668|Hs108|chr22 (183 aa)
initn: 305 init1: 305 opt: 336 Z-score: 437.0 bits: 88.4 E(32554): 5.1e-18
Smith-Waterman score: 336; 32.6% identity (61.1% similar) in 190 aa overlap (9-188:1-180)
10 20 30 40 50
pF1KE0 MNPQIRNPMERMYRDTFYDNFENEPILYGRSY----TWLCYEVKIKRGRSNLLWDTGVFR
: . .:: .:.:. : : : . :::.. . : . :
CCDS13 MALLTAETFRLQFNNKRRLR-RPYYPRKALLCYQLTPQNGSTPT-------R
10 20 30 40
60 70 80 90 100 110
pF1KE0 GQVYFEPQY--HAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNV
: ::: . :::.::.. . . : .:.:.: ...:.:: .:. .:..:.. : ..
CCDS13 G--YFENKKKCHAEICFINEIKSMGLDETQCYQVTCYLTWSPCSSCAWELVDFIKAHDHL
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE0 TLTISAARLYYYWERDYRRALCRLSQAGARVKIMDYEEFAYCWENFVYNEGQ-QFMPWY-
.: : :.::::.: . ...: : . . :..: . ::: :::::: .: .: :.
CCDS13 NLGIFASRLYYHWCKPQQKGLRLLCGSQVPVEVMGFPEFADCWENFVDHEKPLSFNPYKM
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE0 --KFDENYAFLHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVL
..:.: ..: :..:
CCDS13 LEELDKNSRAIKRRLERIKQS
170 180
357 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 23:41:09 2016 done: Wed Nov 2 23:41:10 2016
Total Scan time: 1.980 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]