(Linear) (Six-base) MAPSORT of: KIAA0413.seq Check: 8073 from: 1 to: 3711 KIAA0413.orf With 182 enzymes: SgfI * July 15, 2010 18:28 .. AatII G_ACGT'C Cuts at: 0 2802 3711 Size: 2802 909 AclI AA'CG_TT Cuts at: 0 3575 3711 Size: 3575 136 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 0 985 1117 1211 1309 1670 2867 2869 3711 Size: 985 132 94 98 361 1197 2 842 Fragments arranged by size: 1197 985 842 361 132 98 94 2 AflII C'TTAA_G Cuts at: 0 2871 3625 3711 Size: 2871 754 86 Fragments arranged by size: 2871 754 86 AflIII A'CryG_T Cuts at: 0 3636 3638 3711 Size: 3636 2 73 Fragments arranged by size: 3636 73 2 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 673 3711 Size: 673 3038 AlwNI CAG_nnn'CTG Cuts at: 0 466 1816 2690 3711 Size: 466 1350 874 1021 Fragments arranged by size: 1350 1021 874 466 ApaLI G'TGCA_C Cuts at: 0 950 3711 Size: 950 2761 ApoI r'AATT_y Cuts at: 0 845 1540 1593 2019 2196 2331 3044 3129 Size: 845 695 53 426 177 135 713 85 Cuts at: 3129 3711 Size: 582 Fragments arranged by size: 845 713 695 582 426 177 135 85 53 AseI AT'TA_AT Cuts at: 0 2309 2813 3711 Size: 2309 504 898 Fragments arranged by size: 2309 898 504 BaeI ACnnnnGTAyCnnnnnnn_nnnnn' Cuts at: 0 3060 3093 3711 Size: 3060 33 618 Fragments arranged by size: 3060 618 33 BanI G'GyrC_C Cuts at: 0 1149 3711 Size: 1149 2562 BanII G_rGCy'C Cuts at: 0 140 3711 Size: 140 3571 BbsI GAAGACnn'nnnn_ Cuts at: 0 1103 1208 1406 3019 3711 Size: 1103 105 198 1613 692 Fragments arranged by size: 1613 1103 692 198 105 BglI GCCn_nnn'nGGC Cuts at: 0 3347 3711 Size: 3347 364 BglII A'GATC_T Cuts at: 0 243 1119 3296 3711 Size: 243 876 2177 415 Fragments arranged by size: 2177 876 415 243 BlpI GC'TnA_GC Cuts at: 0 1706 3711 Size: 1706 2005 Bme1580I G_kGCm'C Cuts at: 0 954 3711 Size: 954 2757 BmrI ACTGGGnnnn_n' Cuts at: 0 1672 2039 2129 2541 3593 3711 Size: 1672 367 90 412 1052 118 Fragments arranged by size: 1672 1052 412 367 118 90 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 3321 3509 3572 3711 Size: 3321 188 63 139 Fragments arranged by size: 3321 188 139 63 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 2330 2837 3711 Size: 2330 507 874 Fragments arranged by size: 2330 874 507 BsaI GGTCTCn'nnnn_ Cuts at: 0 683 1672 3711 Size: 683 989 2039 Fragments arranged by size: 2039 989 683 BsaAI yAC'GTr Cuts at: 0 204 961 3639 3711 Size: 204 757 2678 72 Fragments arranged by size: 2678 757 204 72 BsaBI GATnn'nnATC Cuts at: 0 2156 3711 Size: 2156 1555 BsaHI Gr'CG_yC Cuts at: 0 2799 3711 Size: 2799 912 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 0 3488 3518 3711 Size: 3488 30 193 Fragments arranged by size: 3488 193 30 BseYI C'CCAG_C Cuts at: 0 977 3500 3711 Size: 977 2523 211 Fragments arranged by size: 2523 977 211 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 0 1601 3711 Size: 1601 2110 BsiHKAI G_wGCw'C Cuts at: 0 954 2060 3465 3711 Size: 954 1106 1405 246 Fragments arranged by size: 1405 1106 954 246 BsmI GAATG_Cn' Cuts at: 0 269 372 650 1745 1957 3711 Size: 269 103 278 1095 212 1754 Fragments arranged by size: 1754 1095 278 269 212 103 BsmBI CGTCTCn'nnnn_ Cuts at: 0 649 3711 Size: 649 3062 Bsp1286I G_dGCh'C Cuts at: 0 140 954 2060 3465 3711 Size: 140 814 1106 1405 246 Fragments arranged by size: 1405 1106 814 246 140 BspHI T'CATG_A Cuts at: 0 1536 1932 3327 3711 Size: 1536 396 1395 384 Fragments arranged by size: 1536 1395 396 384 BspMI ACCTGCnnnn'nnnn_ Cuts at: 0 1996 3711 Size: 1996 1715 BsrDI GCAATG_nn' Cuts at: 0 2891 3711 Size: 2891 820 BsrGI T'GTAC_A Cuts at: 0 1656 3711 Size: 1656 2055 BstAPI GCAn_nnn'nTGC Cuts at: 0 2536 3711 Size: 2536 1175 BstEII G'GTnAC_C Cuts at: 0 414 3711 Size: 414 3297 BstYI r'GATC_y Cuts at: 0 243 1119 1329 3296 3711 Size: 243 876 210 1967 415 Fragments arranged by size: 1967 876 415 243 210 Bsu36I CC'TnA_GG Cuts at: 0 822 3711 Size: 822 2889 BtgI C'CryG_G Cuts at: 0 3492 3711 Size: 3492 219 BtsI GCAGTG_nn' Cuts at: 0 2208 2537 3711 Size: 2208 329 1174 Fragments arranged by size: 2208 1174 329 DraI TTT'AAA Cuts at: 0 1616 3711 Size: 1616 2095 EaeI y'GGCC_r Cuts at: 0 1439 3711 Size: 1439 2272 EarI CTCTTCn'nnn_ Cuts at: 0 110 288 623 3711 Size: 110 178 335 3088 Fragments arranged by size: 3088 335 178 110 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 0 1789 3711 Size: 1789 1922 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 0 985 1117 1211 1309 1670 2867 2869 3321 Size: 985 132 94 98 361 1197 2 452 Cuts at: 3321 3509 3572 3711 Size: 188 63 139 Fragments arranged by size: 1197 985 452 361 188 139 132 98 94 63 2 EcoNI CCTnn'n_nnAGG Cuts at: 0 1135 3711 Size: 1135 2576 EcoO109I rG'GnC_Cy Cuts at: 0 790 1519 2340 3711 Size: 790 729 821 1371 Fragments arranged by size: 1371 821 790 729 EcoRI G'AATT_C Cuts at: 0 2019 3711 Size: 2019 1692 EcoRV GAT'ATC Cuts at: 0 1366 3711 Size: 1366 2345 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 0 1049 3711 Size: 1049 2662 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 0 1085 1117 1335 1367 1594 1626 2044 2076 Size: 1085 32 218 32 227 32 418 32 Cuts at: 2076 2269 2301 2622 2635 2654 2667 2823 2835 Size: 193 32 321 13 19 13 156 12 Cuts at: 2835 2855 2867 3294 3326 3711 Size: 20 12 427 32 385 Fragments arranged by size: 1085 427 418 385 321 227 218 193 156 32 32 32 32 32 32 20 19 13 13 12 12 HincII GTy'rAC Cuts at: 0 2787 3711 Size: 2787 924 HindIII A'AGCT_T Cuts at: 0 722 2233 2269 3711 Size: 722 1511 36 1442 Fragments arranged by size: 1511 1442 722 36 MfeI C'AATT_G Cuts at: 0 2073 3064 3711 Size: 2073 991 647 Fragments arranged by size: 2073 991 647 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 0 563 3711 Size: 563 3148 MscI TGG'CCA Cuts at: 0 1441 3711 Size: 1441 2270 MslI CAynn'nnrTG Cuts at: 0 655 1811 1937 2048 2311 2450 3458 3711 Size: 655 1156 126 111 263 139 1008 253 Fragments arranged by size: 1156 1008 655 263 253 139 126 111 MspA1I CmG'CkG Cuts at: 0 2254 3711 Size: 2254 1457 NcoI C'CATG_G Cuts at: 0 3492 3711 Size: 3492 219 NdeI CA'TA_TG Cuts at: 0 3660 3711 Size: 3660 51 PasI CC'CwG_GG Cuts at: 0 502 3711 Size: 502 3209 PflMI CCAn_nnn'nTGG Cuts at: 0 977 3711 Size: 977 2734 PmlI CAC'GTG Cuts at: 0 3639 3711 Size: 3639 72 PpuMI rG'GwC_Cy Cuts at: 0 790 2340 3711 Size: 790 1550 1371 Fragments arranged by size: 1550 1371 790 PsiI TTA'TAA Cuts at: 0 907 3711 Size: 907 2804 PstI C_TGCA'G Cuts at: 0 462 566 1214 1715 2215 3711 Size: 462 104 648 501 500 1496 Fragments arranged by size: 1496 648 501 500 462 104 PvuII CAG'CTG Cuts at: 0 2254 3711 Size: 2254 1457 ScaI AGT'ACT Cuts at: 0 985 2500 2551 3230 3711 Size: 985 1515 51 679 481 Fragments arranged by size: 1515 985 679 481 51 SfcI C'TryA_G Cuts at: 0 458 562 1210 1711 1964 2211 3711 Size: 458 104 648 501 253 247 1500 Fragments arranged by size: 1500 648 501 458 253 247 104 SmlI C'TyrA_G Cuts at: 0 2345 2852 2871 3625 3711 Size: 2345 507 19 754 86 Fragments arranged by size: 2345 754 507 86 19 SnaBI TAC'GTA Cuts at: 0 204 3711 Size: 204 3507 SpeI A'CTAG_T Cuts at: 0 2037 2449 3711 Size: 2037 412 1262 Fragments arranged by size: 2037 1262 412 SspI AAT'ATT Cuts at: 0 624 1653 3180 3711 Size: 624 1029 1527 531 Fragments arranged by size: 1527 1029 624 531 StyI C'CwwG_G Cuts at: 0 673 3492 3711 Size: 673 2819 219 Fragments arranged by size: 2819 673 219 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 0 686 702 3492 3711 Size: 686 16 2790 219 Fragments arranged by size: 2790 686 219 16 TatI w'GTAC_w Cuts at: 0 983 1656 2040 2498 2549 2888 3228 3711 Size: 983 673 384 458 51 339 340 483 Fragments arranged by size: 983 673 483 458 384 340 339 51 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 3488 3520 3711 Size: 3488 32 191 Fragments arranged by size: 3488 191 32 Tth111I GACn'n_nGTC Cuts at: 0 3208 3711 Size: 3208 503 XbaI T'CTAG_A Cuts at: 0 1056 1917 3711 Size: 1056 861 1794 Fragments arranged by size: 1794 1056 861 XcmI CCAnnnn_n'nnnnTGG Cuts at: 0 426 3711 Size: 426 3285 XmnI GAAnn'nnTTC Cuts at: 0 1857 2320 3711 Size: 1857 463 1391 Fragments arranged by size: 1857 1391 463 ZraI GAC'GTC Cuts at: 0 2800 3711 Size: 2800 911 Enzymes that do cut: AatII AclI AcuI AflII AflIII AlfI AlwNI ApaLI ApoI AseI BaeI BanI BanII BbsI BglI BglII BlpI Bme1580I BmrI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaXI BseYI BsgI BsiHKAI BsmI BsmBI Bsp1286I BspHI BspMI BsrDI BsrGI BstAPI BstEII BstYI Bsu36I BtgI BtsI DraI EaeI EarI EciI Eco57MI EcoNI EcoO109I EcoRI EcoRV FalI Hin4I HincII HindIII MfeI MmeI MscI MslI MspA1I NcoI NdeI PasI PflMI PmlI PpuMI PsiI PstI PvuII ScaI SfcI SmlI SnaBI SpeI SspI StyI TaqII TatI TstI Tth111I XbaI XcmI XmnI ZraI Enzymes that do not cut: AarI AccI Acc65I AfeI AgeI AhdI AleI AloI ApaI AscI AsiSI AvaI AvrII BamHI BbeI BbvCI BcgI BciVI BclI BfrBI BmgBI BmtI BplI Bpu10I BsaWI BseRI BsiEI BsiWI BspEI BsrBI BsrFI BssHII BssSI BstBI BstXI BstZ17I BtgZI ClaI CspCI DraIII DrdI EagI EcoICRI FseI FspI FspAI HaeII HpaI KasI KpnI MluI NaeI NarI NgoMIV NheI NotI NruI NsiI NspI PacI PciI PfoI PmeI PpiI PshAI PspOMI PspXI PsrI PvuI RsrII SacI SacII SalI SanDI SapI SbfI SexAI SfiI SfoI SgfI SgrAI SmaI SphI SrfI StuI SwaI XhoI XmaI