FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8330, 137 aa 1>>>pF1KB8330 137 - 137 aa - 137 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.1469+/-0.000249; mu= 9.0381+/- 0.016 mean_var=107.6283+/-20.927, 0's: 0 Z-trim(124.2): 7 B-trim: 0 in 0/56 Lambda= 0.123626 statistics sampled from 45340 (45350) to 45340 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.845), E-opt: 0.2 (0.532), width: 16 Scan time: 4.550 The best scores are: opt bits E(85289) XP_006722005 (OMIM: 180073,268000,613582) PREDICTE ( 137) 963 180.7 6.5e-46 XP_016880223 (OMIM: 180073,268000,613582) PREDICTE ( 157) 738 140.6 8.6e-34 XP_016880224 (OMIM: 180073,268000,613582) PREDICTE ( 87) 612 117.9 3.2e-27 XP_016880225 (OMIM: 180073,268000,613582) PREDICTE ( 87) 612 117.9 3.2e-27 NP_002593 (OMIM: 180073,268000,613582) retinal rod ( 87) 612 117.9 3.2e-27 NP_006196 (OMIM: 601190,610024) retinal cone rhodo ( 83) 475 93.5 7e-20 XP_016874920 (OMIM: 601190,610024) PREDICTED: reti ( 83) 475 93.5 7e-20 >>XP_006722005 (OMIM: 180073,268000,613582) PREDICTED: r (137 aa) initn: 963 init1: 963 opt: 963 Z-score: 945.3 bits: 180.7 E(85289): 6.5e-46 Smith-Waterman score: 963; 100.0% identity (100.0% similar) in 137 aa overlap (1-137:1-137) 10 20 30 40 50 60 pF1KB8 MKQRDKGRGWHPAEGGPALTAQPPETRPALDRSRRESRSQGCRGVSVSLTMNLEPPKAEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 MKQRDKGRGWHPAEGGPALTAQPPETRPALDRSRRESRSQGCRGVSVSLTMNLEPPKAEF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 RSATRVAGGPVTPRKGPPKFKQRQTRQFKSKPPKKGVQGFGDDIPGMEGLGTDITVICPW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 RSATRVAGGPVTPRKGPPKFKQRQTRQFKSKPPKKGVQGFGDDIPGMEGLGTDITVICPW 70 80 90 100 110 120 130 pF1KB8 EAFNHLELHELAQYGII ::::::::::::::::: XP_006 EAFNHLELHELAQYGII 130 >>XP_016880223 (OMIM: 180073,268000,613582) PREDICTED: r (157 aa) initn: 737 init1: 737 opt: 738 Z-score: 727.6 bits: 140.6 E(85289): 8.6e-34 Smith-Waterman score: 738; 84.8% identity (87.9% similar) in 132 aa overlap (11-137:26-157) 10 20 30 40 pF1KB8 MKQRDKGRGWHPAEGGPALTAQPPETRPAL-----DRSRRESRSQ .: . :.: : : : .::::::::: XP_016 MWDLQPYVVLPAHLRCNLQLPYYLRQPEPVNEFLSAGRPCRRTFLSKNSRNRSRRESRSQ 10 20 30 40 50 60 50 60 70 80 90 100 pF1KB8 GCRGVSVSLTMNLEPPKAEFRSATRVAGGPVTPRKGPPKFKQRQTRQFKSKPPKKGVQGF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GCRGVSVSLTMNLEPPKAEFRSATRVAGGPVTPRKGPPKFKQRQTRQFKSKPPKKGVQGF 70 80 90 100 110 120 110 120 130 pF1KB8 GDDIPGMEGLGTDITVICPWEAFNHLELHELAQYGII ::::::::::::::::::::::::::::::::::::: XP_016 GDDIPGMEGLGTDITVICPWEAFNHLELHELAQYGII 130 140 150 >>XP_016880224 (OMIM: 180073,268000,613582) PREDICTED: r (87 aa) initn: 612 init1: 612 opt: 612 Z-score: 609.7 bits: 117.9 E(85289): 3.2e-27 Smith-Waterman score: 612; 100.0% identity (100.0% similar) in 87 aa overlap (51-137:1-87) 30 40 50 60 70 80 pF1KB8 AQPPETRPALDRSRRESRSQGCRGVSVSLTMNLEPPKAEFRSATRVAGGPVTPRKGPPKF :::::::::::::::::::::::::::::: XP_016 MNLEPPKAEFRSATRVAGGPVTPRKGPPKF 10 20 30 90 100 110 120 130 pF1KB8 KQRQTRQFKSKPPKKGVQGFGDDIPGMEGLGTDITVICPWEAFNHLELHELAQYGII ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KQRQTRQFKSKPPKKGVQGFGDDIPGMEGLGTDITVICPWEAFNHLELHELAQYGII 40 50 60 70 80 >>XP_016880225 (OMIM: 180073,268000,613582) PREDICTED: r (87 aa) initn: 612 init1: 612 opt: 612 Z-score: 609.7 bits: 117.9 E(85289): 3.2e-27 Smith-Waterman score: 612; 100.0% identity (100.0% similar) in 87 aa overlap (51-137:1-87) 30 40 50 60 70 80 pF1KB8 AQPPETRPALDRSRRESRSQGCRGVSVSLTMNLEPPKAEFRSATRVAGGPVTPRKGPPKF :::::::::::::::::::::::::::::: XP_016 MNLEPPKAEFRSATRVAGGPVTPRKGPPKF 10 20 30 90 100 110 120 130 pF1KB8 KQRQTRQFKSKPPKKGVQGFGDDIPGMEGLGTDITVICPWEAFNHLELHELAQYGII ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KQRQTRQFKSKPPKKGVQGFGDDIPGMEGLGTDITVICPWEAFNHLELHELAQYGII 40 50 60 70 80 >>NP_002593 (OMIM: 180073,268000,613582) retinal rod rho (87 aa) initn: 612 init1: 612 opt: 612 Z-score: 609.7 bits: 117.9 E(85289): 3.2e-27 Smith-Waterman score: 612; 100.0% identity (100.0% similar) in 87 aa overlap (51-137:1-87) 30 40 50 60 70 80 pF1KB8 AQPPETRPALDRSRRESRSQGCRGVSVSLTMNLEPPKAEFRSATRVAGGPVTPRKGPPKF :::::::::::::::::::::::::::::: NP_002 MNLEPPKAEFRSATRVAGGPVTPRKGPPKF 10 20 30 90 100 110 120 130 pF1KB8 KQRQTRQFKSKPPKKGVQGFGDDIPGMEGLGTDITVICPWEAFNHLELHELAQYGII ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 KQRQTRQFKSKPPKKGVQGFGDDIPGMEGLGTDITVICPWEAFNHLELHELAQYGII 40 50 60 70 80 >>NP_006196 (OMIM: 601190,610024) retinal cone rhodopsin (83 aa) initn: 475 init1: 475 opt: 475 Z-score: 477.9 bits: 93.5 E(85289): 7e-20 Smith-Waterman score: 475; 94.2% identity (100.0% similar) in 69 aa overlap (69-137:15-83) 40 50 60 70 80 90 pF1KB8 SQGCRGVSVSLTMNLEPPKAEFRSATRVAGGPVTPRKGPPKFKQRQTRQFKSKPPKKGVQ ::.::::::::::::::::::::::::::. NP_006 MSDNTTLPAPASNQGPTTPRKGPPKFKQRQTRQFKSKPPKKGVK 10 20 30 40 100 110 120 130 pF1KB8 GFGDDIPGMEGLGTDITVICPWEAFNHLELHELAQYGII :::::::::::::::::::::::::.:::::::::.::: NP_006 GFGDDIPGMEGLGTDITVICPWEAFSHLELHELAQFGII 50 60 70 80 >>XP_016874920 (OMIM: 601190,610024) PREDICTED: retinal (83 aa) initn: 475 init1: 475 opt: 475 Z-score: 477.9 bits: 93.5 E(85289): 7e-20 Smith-Waterman score: 475; 94.2% identity (100.0% similar) in 69 aa overlap (69-137:15-83) 40 50 60 70 80 90 pF1KB8 SQGCRGVSVSLTMNLEPPKAEFRSATRVAGGPVTPRKGPPKFKQRQTRQFKSKPPKKGVQ ::.::::::::::::::::::::::::::. XP_016 MSDNTTLPAPASNQGPTTPRKGPPKFKQRQTRQFKSKPPKKGVK 10 20 30 40 100 110 120 130 pF1KB8 GFGDDIPGMEGLGTDITVICPWEAFNHLELHELAQYGII :::::::::::::::::::::::::.:::::::::.::: XP_016 GFGDDIPGMEGLGTDITVICPWEAFSHLELHELAQFGII 50 60 70 80 137 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 04:39:05 2016 done: Mon Nov 7 04:39:06 2016 Total Scan time: 4.550 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]