FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8330, 137 aa 1>>>pF1KB8330 137 - 137 aa - 137 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.1144+/-0.00056; mu= 9.3321+/- 0.034 mean_var=104.9365+/-20.563, 0's: 0 Z-trim(116.9): 3 B-trim: 0 in 0/54 Lambda= 0.125202 statistics sampled from 17513 (17516) to 17513 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.848), E-opt: 0.2 (0.538), width: 16 Scan time: 1.970 The best scores are: opt bits E(32554) CCDS11783.1 PDE6G gene_id:5148|Hs108|chr17 ( 87) 612 119.2 5.1e-28 CCDS8672.1 PDE6H gene_id:5149|Hs108|chr12 ( 83) 475 94.4 1.4e-20 >>CCDS11783.1 PDE6G gene_id:5148|Hs108|chr17 (87 aa) initn: 612 init1: 612 opt: 612 Z-score: 616.5 bits: 119.2 E(32554): 5.1e-28 Smith-Waterman score: 612; 100.0% identity (100.0% similar) in 87 aa overlap (51-137:1-87) 30 40 50 60 70 80 pF1KB8 AQPPETRPALDRSRRESRSQGCRGVSVSLTMNLEPPKAEFRSATRVAGGPVTPRKGPPKF :::::::::::::::::::::::::::::: CCDS11 MNLEPPKAEFRSATRVAGGPVTPRKGPPKF 10 20 30 90 100 110 120 130 pF1KB8 KQRQTRQFKSKPPKKGVQGFGDDIPGMEGLGTDITVICPWEAFNHLELHELAQYGII ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 KQRQTRQFKSKPPKKGVQGFGDDIPGMEGLGTDITVICPWEAFNHLELHELAQYGII 40 50 60 70 80 >>CCDS8672.1 PDE6H gene_id:5149|Hs108|chr12 (83 aa) initn: 475 init1: 475 opt: 475 Z-score: 483.0 bits: 94.4 E(32554): 1.4e-20 Smith-Waterman score: 475; 94.2% identity (100.0% similar) in 69 aa overlap (69-137:15-83) 40 50 60 70 80 90 pF1KB8 SQGCRGVSVSLTMNLEPPKAEFRSATRVAGGPVTPRKGPPKFKQRQTRQFKSKPPKKGVQ ::.::::::::::::::::::::::::::. CCDS86 MSDNTTLPAPASNQGPTTPRKGPPKFKQRQTRQFKSKPPKKGVK 10 20 30 40 100 110 120 130 pF1KB8 GFGDDIPGMEGLGTDITVICPWEAFNHLELHELAQYGII :::::::::::::::::::::::::.:::::::::.::: CCDS86 GFGDDIPGMEGLGTDITVICPWEAFSHLELHELAQFGII 50 60 70 80 137 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 04:39:05 2016 done: Mon Nov 7 04:39:05 2016 Total Scan time: 1.970 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]