FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6206, 198 aa 1>>>pF1KE6206 198 - 198 aa - 198 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.5931+/-0.000376; mu= 16.8355+/- 0.023 mean_var=58.1507+/-11.913, 0's: 0 Z-trim(113.2): 35 B-trim: 568 in 1/50 Lambda= 0.168189 statistics sampled from 22471 (22506) to 22471 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.644), E-opt: 0.2 (0.264), width: 16 Scan time: 5.210 The best scores are: opt bits E(85289) NP_065712 (OMIM: 605257,605258) single-stranded DN ( 198) 1397 347.0 1.2e-95 NP_001317272 (OMIM: 605257,605258) single-stranded ( 188) 1020 255.5 3.8e-68 XP_011519075 (OMIM: 605257,605258) PREDICTED: sing ( 145) 1007 252.3 2.8e-67 NP_660341 (OMIM: 608993) DNA dC->dU-editing enzyme ( 373) 489 126.9 4e-29 XP_011528296 (OMIM: 608993) PREDICTED: DNA dC->dU- ( 442) 489 127.0 4.5e-29 NP_055323 (OMIM: 607750) DNA dC->dU-editing enzyme ( 190) 485 125.7 4.6e-29 NP_689639 (OMIM: 609900) DNA dC->dU-editing enzyme ( 386) 449 117.2 3.4e-26 XP_016884085 (OMIM: 609900) PREDICTED: DNA dC->dU- ( 455) 449 117.3 3.9e-26 XP_006724353 (OMIM: 607113) PREDICTED: DNA dC->dU- ( 317) 402 105.7 7.9e-23 NP_068594 (OMIM: 607113) DNA dC->dU-editing enzyme ( 384) 402 105.8 9.2e-23 XP_016884393 (OMIM: 607113) PREDICTED: DNA dC->dU- ( 457) 402 105.9 1.1e-22 XP_016884392 (OMIM: 607113) PREDICTED: DNA dC->dU- ( 524) 402 105.9 1.2e-22 XP_005261394 (OMIM: 609900) PREDICTED: DNA dC->dU- ( 202) 384 101.2 1.2e-21 NP_001257335 (OMIM: 607109) DNA dC->dU-editing enz ( 181) 378 99.7 2.9e-21 NP_663745 (OMIM: 607109) DNA dC->dU-editing enzyme ( 199) 378 99.8 3.1e-21 XP_011528294 (OMIM: 610976) PREDICTED: DNA dC->dU- ( 200) 378 99.8 3.2e-21 NP_001159475 (OMIM: 610976) DNA dC->dU-editing enz ( 200) 378 99.8 3.2e-21 XP_016884131 (OMIM: 608993) PREDICTED: DNA dC->dU- ( 227) 378 99.8 3.5e-21 NP_004891 (OMIM: 607110) DNA dC->dU-editing enzyme ( 382) 379 100.2 4.4e-21 NP_001159474 (OMIM: 610976) DNA dC->dU-editing enz ( 182) 369 97.5 1.3e-20 NP_861438 (OMIM: 610976) DNA dC->dU-editing enzyme ( 183) 369 97.5 1.3e-20 XP_011528292 (OMIM: 610976) PREDICTED: DNA dC->dU- ( 203) 369 97.6 1.4e-20 XP_011528293 (OMIM: 610976) PREDICTED: DNA dC->dU- ( 203) 369 97.6 1.4e-20 NP_006780 (OMIM: 604797) C->U-editing enzyme APOBE ( 224) 358 94.9 9.9e-20 NP_001257340 (OMIM: 607110) DNA dC->dU-editing enz ( 357) 355 94.4 2.4e-19 NP_001159476 (OMIM: 610976) DNA dC->dU-editing enz ( 154) 299 80.5 1.5e-15 NP_001635 (OMIM: 600130) C->U-editing enzyme APOBE ( 236) 288 78.0 1.3e-14 NP_001291495 (OMIM: 600130) C->U-editing enzyme AP ( 236) 288 78.0 1.3e-14 NP_005880 (OMIM: 600130) C->U-editing enzyme APOBE ( 191) 287 77.7 1.3e-14 >>NP_065712 (OMIM: 605257,605258) single-stranded DNA cy (198 aa) initn: 1397 init1: 1397 opt: 1397 Z-score: 1838.4 bits: 347.0 E(85289): 1.2e-95 Smith-Waterman score: 1397; 100.0% identity (100.0% similar) in 198 aa overlap (1-198:1-198) 10 20 30 40 50 60 pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDFGYLRNKNGCHVELL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_065 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDFGYLRNKNGCHVELL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 FLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYFCEDRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_065 FLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYFCEDRK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 AEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENSVRLSRQLRRIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_065 AEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENSVRLSRQLRRIL 130 140 150 160 170 180 190 pF1KE6 LPLYEVDDLRDAFRTLGL :::::::::::::::::: NP_065 LPLYEVDDLRDAFRTLGL 190 >>NP_001317272 (OMIM: 605257,605258) single-stranded DNA (188 aa) initn: 1009 init1: 1009 opt: 1020 Z-score: 1344.4 bits: 255.5 E(85289): 3.8e-68 Smith-Waterman score: 1282; 94.9% identity (94.9% similar) in 198 aa overlap (1-198:1-188) 10 20 30 40 50 60 pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDFGYLRNKNGCHVELL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDFGYLRNKNGCHVELL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 FLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYFCEDRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYFCEDRK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 AEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENSVRLSRQLRRIL :::::::::::::::::::::: :::::::::::::::::::::::::::: NP_001 AEPEGLRRLHRAGVQIAIMTFK----------ENHERTFKAWEGLHENSVRLSRQLRRIL 130 140 150 160 170 190 pF1KE6 LPLYEVDDLRDAFRTLGL :::::::::::::::::: NP_001 LPLYEVDDLRDAFRTLGL 180 >>XP_011519075 (OMIM: 605257,605258) PREDICTED: single-s (145 aa) initn: 1007 init1: 1007 opt: 1007 Z-score: 1328.9 bits: 252.3 E(85289): 2.8e-67 Smith-Waterman score: 1007; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142) 10 20 30 40 50 60 pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDFGYLRNKNGCHVELL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDFGYLRNKNGCHVELL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 FLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYFCEDRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 FLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYFCEDRK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 AEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENSVRLSRQLRRIL :::::::::::::::::::::: XP_011 AEPEGLRRLHRAGVQIAIMTFKAPV 130 140 >>NP_660341 (OMIM: 608993) DNA dC->dU-editing enzyme APO (373 aa) initn: 606 init1: 232 opt: 489 Z-score: 643.9 bits: 126.9 E(85289): 4e-29 Smith-Waterman score: 489; 43.1% identity (69.0% similar) in 174 aa overlap (11-180:200-372) 10 20 30 40 pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSAT : ..:::.: : :: :..::.... . NP_660 WYKFDDNYAFLHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHS 170 180 190 200 210 220 50 60 70 80 90 pF1KE6 SFSLDFGYLRNK----NGCHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVAD : : .::. . ::.: :: .. : :.:. :.:::.:::::: .:: .::. NP_660 PVSWKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAE 230 240 250 260 270 280 100 110 120 130 140 150 pF1KE6 FLRGNPNLSLRIFTARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHE :: . :..: :::::::. : . :::: : . :... :: .::. :::..:: : . NP_660 FLARHSNVNLTIFTARLYYFWDTDYQ-EGLRSLSQEGASVEIMGYKDFKYCWENFVYNDD 290 300 310 320 330 340 160 170 180 190 pF1KE6 RTFKAWEGLHENSVRLSRQLRRILLPLYEVDDLRDAFRTLGL . :: :.::. : . :. .:..:: NP_660 EPFKPWKGLKYNFLFLDSKLQEILE 350 360 370 >-- initn: 347 init1: 194 opt: 378 Z-score: 498.3 bits: 100.0 E(85289): 5.1e-21 Smith-Waterman score: 378; 36.7% identity (64.4% similar) in 180 aa overlap (6-180:12-188) 10 20 30 40 pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRET-YLCYVVKRRDSATSFSLD---F-GYL : : : :.: : : .::.: .::: :: . . :: : : . NP_660 MKPHFRNTVERMYRDTFSYNFYN-RPILSRRNTVWLCYEVKTKGPSRP-RLDAKIFRGQV 10 20 30 40 50 50 60 70 80 90 100 pF1KE6 RNKNGCHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIF .. :.:. :: .. .: .:...:::.::.:: ::. ..:.:: .::..: : NP_660 YSQPEHHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLAEHPNVTLTIS 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE6 TARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENS .::::. .: . ..: :: .::... :: ... :::..:: .. . : : . .: NP_660 AARLYYYWERDYR-RALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPFMPWYKFDDNY 120 130 140 150 160 170 170 180 190 pF1KE6 VRLSRQLRRILLPLYEVDDLRDAFRTLGL . : : :..:: NP_660 AFLHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGV 180 190 200 210 220 230 >>XP_011528296 (OMIM: 608993) PREDICTED: DNA dC->dU-edit (442 aa) initn: 606 init1: 232 opt: 489 Z-score: 642.9 bits: 127.0 E(85289): 4.5e-29 Smith-Waterman score: 489; 43.1% identity (69.0% similar) in 174 aa overlap (11-180:269-441) 10 20 30 40 pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSAT : ..:::.: : :: :..::.... . XP_011 WYKFDDNYAFLHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHS 240 250 260 270 280 290 50 60 70 80 90 pF1KE6 SFSLDFGYLRNK----NGCHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVAD : : .::. . ::.: :: .. : :.:. :.:::.:::::: .:: .::. XP_011 PVSWKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAE 300 310 320 330 340 350 100 110 120 130 140 150 pF1KE6 FLRGNPNLSLRIFTARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHE :: . :..: :::::::. : . :::: : . :... :: .::. :::..:: : . XP_011 FLARHSNVNLTIFTARLYYFWDTDYQ-EGLRSLSQEGASVEIMGYKDFKYCWENFVYNDD 360 370 380 390 400 410 160 170 180 190 pF1KE6 RTFKAWEGLHENSVRLSRQLRRILLPLYEVDDLRDAFRTLGL . :: :.::. : . :. .:..:: XP_011 EPFKPWKGLKYNFLFLDSKLQEILE 420 430 440 >-- initn: 338 init1: 194 opt: 287 Z-score: 378.0 bits: 77.9 E(85289): 2.6e-14 Smith-Waterman score: 287; 38.1% identity (64.7% similar) in 139 aa overlap (6-139:12-147) 10 20 30 40 pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRET-YLCYVVKRRDSATSFSLD---F-GYL : : : :.: : : .::.: .::: :: . . :: : : . XP_011 MKPHFRNTVERMYRDTFSYNFYN-RPILSRRNTVWLCYEVKTKGPSRP-RLDAKIFRGQV 10 20 30 40 50 50 60 70 80 90 100 pF1KE6 RNKNGCHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIF .. :.:. :: .. .: .:...:::.::.:: ::. ..:.:: .::..: : XP_011 YSQPEHHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLAEHPNVTLTIS 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE6 TARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENS .::::. .: . ..: :: .::... :: XP_011 AARLYYYWERDYR-RALCRLSQAGARVKIMDDEGERWRGQGSVSGRNSMKDGWICNAMAG 120 130 140 150 160 170 >>NP_055323 (OMIM: 607750) DNA dC->dU-editing enzyme APO (190 aa) initn: 495 init1: 238 opt: 485 Z-score: 642.7 bits: 125.7 E(85289): 4.6e-29 Smith-Waterman score: 485; 44.9% identity (69.3% similar) in 176 aa overlap (11-180:17-189) 10 20 30 40 50 pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVK--RRDSATSFSLDFGYLRNK : .::::. :. : ::.::..:. .: :..:.. : .::. NP_055 MNPQIRNPMKAMYPGTFYFQFKNLWEANDRNETWLCFTVEGIKRRSVVSWKT--GVFRNQ 10 20 30 40 50 60 70 80 90 100 pF1KE6 ----NGCHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRI . ::.: :: .. : :.:. :.:::.:::::: ::: .::.:: . :..: : NP_055 VDSETHCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTI 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE6 FTARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHEN ::::::. . :::: : . :: . :: ..:. :::..:: : .. :: :.::. : NP_055 FTARLYYFQ-YPCYQEGLRSLSQEGVAVEIMDYEDFKYCWENFVYNDNEPFKPWKGLKTN 120 130 140 150 160 170 170 180 190 pF1KE6 SVRLSRQLRRILLPLYEVDDLRDAFRTLGL :.:.::. : NP_055 FRLLKRRLRESLQ 180 190 >>NP_689639 (OMIM: 609900) DNA dC->dU-editing enzyme APO (386 aa) initn: 494 init1: 221 opt: 449 Z-score: 591.2 bits: 117.2 E(85289): 3.4e-26 Smith-Waterman score: 449; 40.8% identity (66.7% similar) in 174 aa overlap (11-180:213-385) 10 20 30 40 pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSAT : ..:::. : :: :..::.... . NP_689 WYKFDDNYASLHRTLKEILRNPMEAMYPHIFYFHFKNLLKACGRNESWLCFTMEVTKHHS 190 200 210 220 230 240 50 60 70 80 90 pF1KE6 SFSLDFGYLRNK----NGCHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVAD . : .::. . ::.: :: .. : :.:. :.:::.:::::: .:: .::. NP_689 AVFRKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAE 250 260 270 280 290 300 100 110 120 130 140 150 pF1KE6 FLRGNPNLSLRIFTARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHE :: . :..: :::::: . : . ::: : . :... :: .::. ::..:: . . NP_689 FLARHSNVNLTIFTARLCYFWDTDYQ-EGLCSLSQEGASVKIMGYKDFVSCWKNFVYSDD 310 320 330 340 350 360 160 170 180 190 pF1KE6 RTFKAWEGLHENSVRLSRQLRRILLPLYEVDDLRDAFRTLGL . :: :.::. : :.:.::.:: NP_689 EPFKPWKGLQTNFRLLKRRLREILQ 370 380 >-- initn: 407 init1: 198 opt: 381 Z-score: 502.1 bits: 100.7 E(85289): 3.2e-21 Smith-Waterman score: 381; 35.2% identity (59.1% similar) in 193 aa overlap (6-180:12-201) 10 20 30 40 pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDFG------- : : : .:.: :: :.::: :: . . ... : : NP_689 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVL 10 20 30 40 50 60 50 60 70 80 90 pF1KE6 -----------YLRNKNGCHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVAD :.: .: :.:. :: .. : .: ...:::.::.:: :. .:. NP_689 PKRQSNHRQEVYFRFEN--HAEMCFLSWFCGNRLPANRRFQITWFVSWNPCLPCVVKVTK 70 80 90 100 110 100 110 120 130 140 150 pF1KE6 FLRGNPNLSLRIFTARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHE :: .::..: : .::::. .:: . : :::.::... :: ..:. :::..:: :. NP_689 FLAEHPNVTLTISAARLYYYRDRDWR-WVLLRLHKAGARVKIMDYEDFAYCWENFVCNEG 120 130 140 150 160 170 160 170 180 190 pF1KE6 RTFKAWEGLHENSVRLSRQLRRILLPLYEVDDLRDAFRTLGL . : : . .: . : : :..:: NP_689 QPFMPWYKFDDNYASLHRTLKEILRNPMEAMYPHIFYFHFKNLLKACGRNESWLCFTMEV 180 190 200 210 220 230 >>XP_016884085 (OMIM: 609900) PREDICTED: DNA dC->dU-edit (455 aa) initn: 494 init1: 221 opt: 449 Z-score: 590.2 bits: 117.3 E(85289): 3.9e-26 Smith-Waterman score: 449; 40.8% identity (66.7% similar) in 174 aa overlap (11-180:282-454) 10 20 30 40 pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSAT : ..:::. : :: :..::.... . XP_016 WYKFDDNYASLHRTLKEILRNPMEAMYPHIFYFHFKNLLKACGRNESWLCFTMEVTKHHS 260 270 280 290 300 310 50 60 70 80 90 pF1KE6 SFSLDFGYLRNK----NGCHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVAD . : .::. . ::.: :: .. : :.:. :.:::.:::::: .:: .::. XP_016 AVFRKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAE 320 330 340 350 360 370 100 110 120 130 140 150 pF1KE6 FLRGNPNLSLRIFTARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHE :: . :..: :::::: . : . ::: : . :... :: .::. ::..:: . . XP_016 FLARHSNVNLTIFTARLCYFWDTDYQ-EGLCSLSQEGASVKIMGYKDFVSCWKNFVYSDD 380 390 400 410 420 430 160 170 180 190 pF1KE6 RTFKAWEGLHENSVRLSRQLRRILLPLYEVDDLRDAFRTLGL . :: :.::. : :.:.::.:: XP_016 EPFKPWKGLQTNFRLLKRRLREILQ 440 450 >-- initn: 348 init1: 198 opt: 272 Z-score: 358.1 bits: 74.3 E(85289): 3.3e-13 Smith-Waterman score: 272; 34.2% identity (57.4% similar) in 155 aa overlap (6-142:12-163) 10 20 30 40 pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDFG------- : : : .:.: :: :.::: :: . . ... : : XP_016 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVL 10 20 30 40 50 60 50 60 70 80 90 pF1KE6 -----------YLRNKNGCHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVAD :.: .: :.:. :: .. : .: ...:::.::.:: :. .:. XP_016 PKRQSNHRQEVYFRFEN--HAEMCFLSWFCGNRLPANRRFQITWFVSWNPCLPCVVKVTK 70 80 90 100 110 100 110 120 130 140 150 pF1KE6 FLRGNPNLSLRIFTARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHE :: .::..: : .::::. .:: . : :::.::... :: .. XP_016 FLAEHPNVTLTISAARLYYYRDRDWRWV-LLRLHKAGARVKIMDYEGERCRGQGSMTGRN 120 130 140 150 160 170 160 170 180 190 pF1KE6 RTFKAWEGLHENSVRLSRQLRRILLPLYEVDDLRDAFRTLGL XP_016 SLRDGWICNAMAGGVPGQPAGVGLALIATDSQETRPGRAGPGSGESLSASHLFISDFAYC 180 190 200 210 220 230 >>XP_006724353 (OMIM: 607113) PREDICTED: DNA dC->dU-edit (317 aa) initn: 384 init1: 207 opt: 402 Z-score: 530.8 bits: 105.7 E(85289): 7.9e-23 Smith-Waterman score: 491; 44.3% identity (68.6% similar) in 185 aa overlap (6-180:130-312) 10 20 30 pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKR :. : ..:.: :..::.:::::: :.: XP_006 SQRELFEPWNNLPKYYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVER 100 110 120 130 140 150 40 50 60 70 80 pF1KE6 --RDSATSFSLDFGYLRNK--------NGCHVELLFLRYISDWDLDPGRCYRVTWFTSWS :. . .. :.: :. .: :.:: :: : : :: . :::: ::::: XP_006 MHNDTWVLLNQRRGFLCNQAPHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWS 160 170 180 190 200 210 90 100 110 120 130 140 pF1KE6 PCYDCARHVADFLRGNPNLSLRIFTARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYF ::..::...: :. : ..:: :::::.: .:. :::: : .::..:.:::.... XP_006 PCFSCAQEMAKFISKNKHVSLCIFTARIY--DDQGRCQEGLRTLAEAGAKISIMTYSEFK 220 230 240 250 260 270 150 160 170 180 190 pF1KE6 YCWNTFVENHERTFKAWEGLHENSVRLSRQLRRILLPLYEVDDLRDAFRTLGL .::.:::... :. :.:: :.: :: .:: :: XP_006 HCWDTFVDHQGCPFQPWDGLDEHSQDLSGRLRAILQNQEN 280 290 300 310 >-- initn: 274 init1: 166 opt: 278 Z-score: 368.2 bits: 75.6 E(85289): 9.1e-14 Smith-Waterman score: 278; 36.8% identity (66.4% similar) in 125 aa overlap (61-180:3-126) 40 50 60 70 80 pF1KE6 YVVKRRDSATSFSLDFGYLRNKNGCHVELLFLRYISDW-DLDPGRCYRVTWFTSWSPCYD :....: : : . :.:::. ::::: XP_006 MRFFHWFSKWRKLHRDQEYEVTWYISWSPCTK 10 20 30 90 100 110 120 130 140 pF1KE6 CARHVADFLRGNPNLSLRIFTARLYFCEDRKAEPEGLRRL--HRAG--VQIAIMTFKDYF :.: .: :: .:...: ::.::::. : . :.:: : .: : . . ::.. .. XP_006 CTRDMATFLAEDPKVTLTIFVARLYYFWDPDYQ-EALRSLCQKRDGPRATMKIMNYDEFQ 40 50 60 70 80 90 150 160 170 180 190 pF1KE6 YCWNTFVENHERTFKAWEGLHENSVRLSRQLRRILLPLYEVDDLRDAFRTLGL .::. :: .... :. :..: . . : .: .:: XP_006 HCWSKFVYSQRELFEPWNNLPKYYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHET 100 110 120 130 140 150 XP_006 YLCYEVERMHNDTWVLLNQRRGFLCNQAPHKHGFLEGRHAELCFLDVIPFWKLDLDQDYR 160 170 180 190 200 210 >>NP_068594 (OMIM: 607113) DNA dC->dU-editing enzyme APO (384 aa) initn: 459 init1: 207 opt: 402 Z-score: 529.6 bits: 105.8 E(85289): 9.2e-23 Smith-Waterman score: 491; 44.3% identity (68.6% similar) in 185 aa overlap (6-180:197-379) 10 20 30 pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKR :. : ..:.: :..::.:::::: :.: NP_068 SQRELFEPWNNLPKYYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVER 170 180 190 200 210 220 40 50 60 70 80 pF1KE6 --RDSATSFSLDFGYLRNK--------NGCHVELLFLRYISDWDLDPGRCYRVTWFTSWS :. . .. :.: :. .: :.:: :: : : :: . :::: ::::: NP_068 MHNDTWVLLNQRRGFLCNQAPHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWS 230 240 250 260 270 280 90 100 110 120 130 140 pF1KE6 PCYDCARHVADFLRGNPNLSLRIFTARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYF ::..::...: :. : ..:: :::::.: .:. :::: : .::..:.:::.... NP_068 PCFSCAQEMAKFISKNKHVSLCIFTARIY--DDQGRCQEGLRTLAEAGAKISIMTYSEFK 290 300 310 320 330 340 150 160 170 180 190 pF1KE6 YCWNTFVENHERTFKAWEGLHENSVRLSRQLRRILLPLYEVDDLRDAFRTLGL .::.:::... :. :.:: :.: :: .:: :: NP_068 HCWDTFVDHQGCPFQPWDGLDEHSQDLSGRLRAILQNQEN 350 360 370 380 >-- initn: 296 init1: 166 opt: 335 Z-score: 441.8 bits: 89.5 E(85289): 7.2e-18 Smith-Waterman score: 335; 36.2% identity (61.6% similar) in 185 aa overlap (6-180:12-193) 10 20 30 40 pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRET-YLCYVVKRRDSATSFSLD---F-GYL : : : :.: : : .::.: .::: :: . . :: : : . NP_068 MKPHFRNTVERMYRDTFSYNFYN-RPILSRRNTVWLCYEVKTKGPSRP-PLDAKIFRGQV 10 20 30 40 50 50 60 70 80 90 100 pF1KE6 RNKNGCHVELLFLRYISDW-DLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRI .. : :. :....: : : . :.:::. ::::: :.: .: :: .:...: : NP_068 YSELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTI 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE6 FTARLYFCEDRKAEPEGLRRL--HRAG--VQIAIMTFKDYFYCWNTFVENHERTFKAWEG :.::::. : . :.:: : .: : . . ::.. .. .::. :: .... :. :.. NP_068 FVARLYYFWDPDYQ-EALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNN 120 130 140 150 160 170 170 180 190 pF1KE6 LHENSVRLSRQLRRILLPLYEVDDLRDAFRTLGL : . . : .: .:: NP_068 LPKYYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQ 180 190 200 210 220 230 198 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:04:47 2016 done: Tue Nov 8 11:04:48 2016 Total Scan time: 5.210 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]