FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6206, 198 aa 1>>>pF1KE6206 198 - 198 aa - 198 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9573+/-0.000798; mu= 14.5208+/- 0.048 mean_var=57.5888+/-11.770, 0's: 0 Z-trim(106.9): 17 B-trim: 138 in 1/48 Lambda= 0.169007 statistics sampled from 9267 (9283) to 9267 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.285), width: 16 Scan time: 1.180 The best scores are: opt bits E(32554) CCDS41747.1 AICDA gene_id:57379|Hs108|chr12 ( 198) 1397 348.6 1.5e-96 CCDS81662.1 AICDA gene_id:57379|Hs108|chr12 ( 188) 1020 256.7 6.6e-69 CCDS33648.1 APOBEC3F gene_id:200316|Hs108|chr22 ( 373) 489 127.3 1.1e-29 CCDS13983.1 APOBEC3C gene_id:27350|Hs108|chr22 ( 190) 485 126.2 1.2e-29 CCDS46709.1 APOBEC3D gene_id:140564|Hs108|chr22 ( 386) 449 117.6 9.9e-27 CCDS13984.1 APOBEC3G gene_id:60489|Hs108|chr22 ( 384) 402 106.1 2.8e-23 CCDS13981.1 APOBEC3A gene_id:200315|Hs108|chr22 ( 199) 378 100.1 9.2e-22 CCDS54530.1 APOBEC3H gene_id:164668|Hs108|chr22 ( 200) 378 100.1 9.2e-22 CCDS13982.1 APOBEC3B gene_id:9582|Hs108|chr22 ( 382) 379 100.5 1.3e-21 CCDS54531.1 APOBEC3H gene_id:164668|Hs108|chr22 ( 182) 369 97.9 3.9e-21 CCDS13985.1 APOBEC3H gene_id:164668|Hs108|chr22 ( 183) 369 97.9 3.9e-21 CCDS4848.1 APOBEC2 gene_id:10930|Hs108|chr6 ( 224) 358 95.3 3e-20 CCDS58807.1 APOBEC3B gene_id:9582|Hs108|chr22 ( 357) 355 94.7 7.3e-20 CCDS54532.1 APOBEC3H gene_id:164668|Hs108|chr22 ( 154) 299 80.8 4.7e-16 CCDS8579.1 APOBEC1 gene_id:339|Hs108|chr12 ( 236) 288 78.2 4.3e-15 >>CCDS41747.1 AICDA gene_id:57379|Hs108|chr12 (198 aa) initn: 1397 init1: 1397 opt: 1397 Z-score: 1847.0 bits: 348.6 E(32554): 1.5e-96 Smith-Waterman score: 1397; 100.0% identity (100.0% similar) in 198 aa overlap (1-198:1-198) 10 20 30 40 50 60 pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDFGYLRNKNGCHVELL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDFGYLRNKNGCHVELL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 FLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYFCEDRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 FLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYFCEDRK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 AEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENSVRLSRQLRRIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 AEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENSVRLSRQLRRIL 130 140 150 160 170 180 190 pF1KE6 LPLYEVDDLRDAFRTLGL :::::::::::::::::: CCDS41 LPLYEVDDLRDAFRTLGL 190 >>CCDS81662.1 AICDA gene_id:57379|Hs108|chr12 (188 aa) initn: 1009 init1: 1009 opt: 1020 Z-score: 1350.5 bits: 256.7 E(32554): 6.6e-69 Smith-Waterman score: 1282; 94.9% identity (94.9% similar) in 198 aa overlap (1-198:1-188) 10 20 30 40 50 60 pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDFGYLRNKNGCHVELL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDFGYLRNKNGCHVELL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 FLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYFCEDRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 FLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYFCEDRK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 AEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENSVRLSRQLRRIL :::::::::::::::::::::: :::::::::::::::::::::::::::: CCDS81 AEPEGLRRLHRAGVQIAIMTFK----------ENHERTFKAWEGLHENSVRLSRQLRRIL 130 140 150 160 170 190 pF1KE6 LPLYEVDDLRDAFRTLGL :::::::::::::::::: CCDS81 LPLYEVDDLRDAFRTLGL 180 >>CCDS33648.1 APOBEC3F gene_id:200316|Hs108|chr22 (373 aa) initn: 606 init1: 232 opt: 489 Z-score: 646.3 bits: 127.3 E(32554): 1.1e-29 Smith-Waterman score: 489; 43.1% identity (69.0% similar) in 174 aa overlap (11-180:200-372) 10 20 30 40 pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSAT : ..:::.: : :: :..::.... . CCDS33 WYKFDDNYAFLHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHS 170 180 190 200 210 220 50 60 70 80 90 pF1KE6 SFSLDFGYLRNK----NGCHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVAD : : .::. . ::.: :: .. : :.:. :.:::.:::::: .:: .::. CCDS33 PVSWKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAE 230 240 250 260 270 280 100 110 120 130 140 150 pF1KE6 FLRGNPNLSLRIFTARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHE :: . :..: :::::::. : . :::: : . :... :: .::. :::..:: : . CCDS33 FLARHSNVNLTIFTARLYYFWDTDYQ-EGLRSLSQEGASVEIMGYKDFKYCWENFVYNDD 290 300 310 320 330 340 160 170 180 190 pF1KE6 RTFKAWEGLHENSVRLSRQLRRILLPLYEVDDLRDAFRTLGL . :: :.::. : . :. .:..:: CCDS33 EPFKPWKGLKYNFLFLDSKLQEILE 350 360 370 >-- initn: 347 init1: 194 opt: 378 Z-score: 500.1 bits: 100.3 E(32554): 1.6e-21 Smith-Waterman score: 378; 36.7% identity (64.4% similar) in 180 aa overlap (6-180:12-188) 10 20 30 40 pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRET-YLCYVVKRRDSATSFSLD---F-GYL : : : :.: : : .::.: .::: :: . . :: : : . CCDS33 MKPHFRNTVERMYRDTFSYNFYN-RPILSRRNTVWLCYEVKTKGPSRP-RLDAKIFRGQV 10 20 30 40 50 50 60 70 80 90 100 pF1KE6 RNKNGCHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIF .. :.:. :: .. .: .:...:::.::.:: ::. ..:.:: .::..: : CCDS33 YSQPEHHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLAEHPNVTLTIS 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE6 TARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENS .::::. .: . ..: :: .::... :: ... :::..:: .. . : : . .: CCDS33 AARLYYYWERDYR-RALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPFMPWYKFDDNY 120 130 140 150 160 170 170 180 190 pF1KE6 VRLSRQLRRILLPLYEVDDLRDAFRTLGL . : : :..:: CCDS33 AFLHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGV 180 190 200 210 220 230 >>CCDS13983.1 APOBEC3C gene_id:27350|Hs108|chr22 (190 aa) initn: 495 init1: 238 opt: 485 Z-score: 645.5 bits: 126.2 E(32554): 1.2e-29 Smith-Waterman score: 485; 44.9% identity (69.3% similar) in 176 aa overlap (11-180:17-189) 10 20 30 40 50 pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVK--RRDSATSFSLDFGYLRNK : .::::. :. : ::.::..:. .: :..:.. : .::. CCDS13 MNPQIRNPMKAMYPGTFYFQFKNLWEANDRNETWLCFTVEGIKRRSVVSWKT--GVFRNQ 10 20 30 40 50 60 70 80 90 100 pF1KE6 ----NGCHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRI . ::.: :: .. : :.:. :.:::.:::::: ::: .::.:: . :..: : CCDS13 VDSETHCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTI 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE6 FTARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHEN ::::::. . :::: : . :: . :: ..:. :::..:: : .. :: :.::. : CCDS13 FTARLYYFQ-YPCYQEGLRSLSQEGVAVEIMDYEDFKYCWENFVYNDNEPFKPWKGLKTN 120 130 140 150 160 170 170 180 190 pF1KE6 SVRLSRQLRRILLPLYEVDDLRDAFRTLGL :.:.::. : CCDS13 FRLLKRRLRESLQ 180 190 >>CCDS46709.1 APOBEC3D gene_id:140564|Hs108|chr22 (386 aa) initn: 494 init1: 221 opt: 449 Z-score: 593.4 bits: 117.6 E(32554): 9.9e-27 Smith-Waterman score: 449; 40.8% identity (66.7% similar) in 174 aa overlap (11-180:213-385) 10 20 30 40 pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSAT : ..:::. : :: :..::.... . CCDS46 WYKFDDNYASLHRTLKEILRNPMEAMYPHIFYFHFKNLLKACGRNESWLCFTMEVTKHHS 190 200 210 220 230 240 50 60 70 80 90 pF1KE6 SFSLDFGYLRNK----NGCHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVAD . : .::. . ::.: :: .. : :.:. :.:::.:::::: .:: .::. CCDS46 AVFRKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAE 250 260 270 280 290 300 100 110 120 130 140 150 pF1KE6 FLRGNPNLSLRIFTARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHE :: . :..: :::::: . : . ::: : . :... :: .::. ::..:: . . CCDS46 FLARHSNVNLTIFTARLCYFWDTDYQ-EGLCSLSQEGASVKIMGYKDFVSCWKNFVYSDD 310 320 330 340 350 360 160 170 180 190 pF1KE6 RTFKAWEGLHENSVRLSRQLRRILLPLYEVDDLRDAFRTLGL . :: :.::. : :.:.::.:: CCDS46 EPFKPWKGLQTNFRLLKRRLREILQ 370 380 >-- initn: 407 init1: 198 opt: 381 Z-score: 503.8 bits: 101.0 E(32554): 9.7e-22 Smith-Waterman score: 381; 35.2% identity (59.1% similar) in 193 aa overlap (6-180:12-201) 10 20 30 40 pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDFG------- : : : .:.: :: :.::: :: . . ... : : CCDS46 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVL 10 20 30 40 50 60 50 60 70 80 90 pF1KE6 -----------YLRNKNGCHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVAD :.: .: :.:. :: .. : .: ...:::.::.:: :. .:. CCDS46 PKRQSNHRQEVYFRFEN--HAEMCFLSWFCGNRLPANRRFQITWFVSWNPCLPCVVKVTK 70 80 90 100 110 100 110 120 130 140 150 pF1KE6 FLRGNPNLSLRIFTARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHE :: .::..: : .::::. .:: . : :::.::... :: ..:. :::..:: :. CCDS46 FLAEHPNVTLTISAARLYYYRDRDWR-WVLLRLHKAGARVKIMDYEDFAYCWENFVCNEG 120 130 140 150 160 170 160 170 180 190 pF1KE6 RTFKAWEGLHENSVRLSRQLRRILLPLYEVDDLRDAFRTLGL . : : . .: . : : :..:: CCDS46 QPFMPWYKFDDNYASLHRTLKEILRNPMEAMYPHIFYFHFKNLLKACGRNESWLCFTMEV 180 190 200 210 220 230 >>CCDS13984.1 APOBEC3G gene_id:60489|Hs108|chr22 (384 aa) initn: 459 init1: 207 opt: 402 Z-score: 531.5 bits: 106.1 E(32554): 2.8e-23 Smith-Waterman score: 491; 44.3% identity (68.6% similar) in 185 aa overlap (6-180:197-379) 10 20 30 pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKR :. : ..:.: :..::.:::::: :.: CCDS13 SQRELFEPWNNLPKYYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVER 170 180 190 200 210 220 40 50 60 70 80 pF1KE6 --RDSATSFSLDFGYLRNK--------NGCHVELLFLRYISDWDLDPGRCYRVTWFTSWS :. . .. :.: :. .: :.:: :: : : :: . :::: ::::: CCDS13 MHNDTWVLLNQRRGFLCNQAPHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWS 230 240 250 260 270 280 90 100 110 120 130 140 pF1KE6 PCYDCARHVADFLRGNPNLSLRIFTARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYF ::..::...: :. : ..:: :::::.: .:. :::: : .::..:.:::.... CCDS13 PCFSCAQEMAKFISKNKHVSLCIFTARIY--DDQGRCQEGLRTLAEAGAKISIMTYSEFK 290 300 310 320 330 340 150 160 170 180 190 pF1KE6 YCWNTFVENHERTFKAWEGLHENSVRLSRQLRRILLPLYEVDDLRDAFRTLGL .::.:::... :. :.:: :.: :: .:: :: CCDS13 HCWDTFVDHQGCPFQPWDGLDEHSQDLSGRLRAILQNQEN 350 360 370 380 >-- initn: 296 init1: 166 opt: 335 Z-score: 443.2 bits: 89.8 E(32554): 2.3e-18 Smith-Waterman score: 335; 36.2% identity (61.6% similar) in 185 aa overlap (6-180:12-193) 10 20 30 40 pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRET-YLCYVVKRRDSATSFSLD---F-GYL : : : :.: : : .::.: .::: :: . . :: : : . CCDS13 MKPHFRNTVERMYRDTFSYNFYN-RPILSRRNTVWLCYEVKTKGPSRP-PLDAKIFRGQV 10 20 30 40 50 50 60 70 80 90 100 pF1KE6 RNKNGCHVELLFLRYISDW-DLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRI .. : :. :....: : : . :.:::. ::::: :.: .: :: .:...: : CCDS13 YSELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTI 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE6 FTARLYFCEDRKAEPEGLRRL--HRAG--VQIAIMTFKDYFYCWNTFVENHERTFKAWEG :.::::. : . :.:: : .: : . . ::.. .. .::. :: .... :. :.. CCDS13 FVARLYYFWDPDYQ-EALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNN 120 130 140 150 160 170 170 180 190 pF1KE6 LHENSVRLSRQLRRILLPLYEVDDLRDAFRTLGL : . . : .: .:: CCDS13 LPKYYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQ 180 190 200 210 220 230 >>CCDS13981.1 APOBEC3A gene_id:200315|Hs108|chr22 (199 aa) initn: 368 init1: 291 opt: 378 Z-score: 504.2 bits: 100.1 E(32554): 9.2e-22 Smith-Waterman score: 461; 43.6% identity (68.6% similar) in 188 aa overlap (5-180:12-194) 10 20 30 40 50 pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLD--FGYLRN ::. . : .:.: . ::..::::: :.: :..:: ..: :.:.: CCDS13 MEASPASGPRHLMDPHIFTSNFNN---GIGRHKTYLCYEVERLDNGTSVKMDQHRGFLHN 10 20 30 40 50 60 70 80 90 100 pF1KE6 --KN------GCHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYD--CARHVADFLRGN :: : :.:: :: . . .:::.. :::::: :::::.. :: .: ::. : CCDS13 QAKNLLCGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQEN 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE6 PNLSLRIFTARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKA .. ::::.::.: . :.:. :. ::.:..:::. .. .::.:::... :. CCDS13 THVRLRIFAARIY--DYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQP 120 130 140 150 160 170 170 180 190 pF1KE6 WEGLHENSVRLSRQLRRILLPLYEVDDLRDAFRTLGL :.:: :.: :: .:: :: CCDS13 WDGLDEHSQALSGRLRAILQNQGN 180 190 >>CCDS54530.1 APOBEC3H gene_id:164668|Hs108|chr22 (200 aa) initn: 330 init1: 235 opt: 378 Z-score: 504.1 bits: 100.1 E(32554): 9.2e-22 Smith-Waterman score: 378; 35.8% identity (63.7% similar) in 190 aa overlap (5-182:3-183) 10 20 30 40 50 pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRETY-----LCYVVKRRDSATSFSLDFGYLRNKNGC :.. . : ::.: : . :: : ::: . ....: ::..::. : CCDS54 MALLTAETFRLQFNNKR--RLRRPYYPRKALLCYQLTPQNGSTPTR---GYFENKKKC 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 HVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYF :.:. :. :.. :: .::.:: . .:::: .:: ...::.... .:.: ::..:::. CCDS54 HAEICFINEIKSMGLDETQCYQVTCYLTWSPCSSCAWELVDFIKAHDHLNLGIFASRLYY 60 70 80 90 100 110 120 130 140 150 160 pF1KE6 --CEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERT-----FKAWEGLHEN : : . .::: : . : . .: : .. ::..::. ::. .: : : .: CCDS54 HWC---KPQQKGLRLLCGSQVPVEVMGFPEFADCWENFVD-HEKPLSFNPYKMLEELDKN 120 130 140 150 160 170 180 190 pF1KE6 SVRLSRQLRRILLPLYEVDDLRDAFRTLGL : ..:.:.:: .: CCDS54 SRAIKRRLERIKIPGVRAQGRYMDILCDAEV 170 180 190 200 >>CCDS13982.1 APOBEC3B gene_id:9582|Hs108|chr22 (382 aa) initn: 413 init1: 293 opt: 379 Z-score: 501.2 bits: 100.5 E(32554): 1.3e-21 Smith-Waterman score: 460; 43.6% identity (66.5% similar) in 188 aa overlap (5-180:192-377) 10 20 30 pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVK ::. : ..:.: . ::.::::: :. CCDS13 YNEGQQFMPWYKFDENYAFLHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVE 170 180 190 200 210 220 40 50 60 70 80 pF1KE6 RRDSATSFSLD--FGYLRN--KN------GCHVELLFLRYISDWDLDPGRCYRVTWFTSW : :..: .: .:.: : :: : :.:: :: . . .:::.. :::::: :: CCDS13 RLDNGTWVLMDQHMGFLCNEAKNLLCGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISW 230 240 250 260 270 280 90 100 110 120 130 140 pF1KE6 SPCYD--CARHVADFLRGNPNLSLRIFTARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFK :::.. :: .: ::. : .. ::::.::.: . :.:. :. ::.:..:::. CCDS13 SPCFSWGCAGEVRAFLQENTHVRLRIFAARIY--DYDPLYKEALQMLRDAGAQVSIMTYD 290 300 310 320 330 150 160 170 180 190 pF1KE6 DYFYCWNTFVENHERTFKAWEGLHENSVRLSRQLRRILLPLYEVDDLRDAFRTLGL .. :::.::: . :. :.::.:.: :: .:: :: CCDS13 EFEYCWDTFVYRQGCPFQPWDGLEEHSQALSGRLRAILQNQGN 340 350 360 370 380 >-- initn: 394 init1: 195 opt: 418 Z-score: 552.6 bits: 110.0 E(32554): 1.8e-24 Smith-Waterman score: 418; 36.9% identity (65.4% similar) in 179 aa overlap (6-180:12-189) 10 20 30 40 50 pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDFGYLRN--- : : : .:.: :: :.::: :: . . ... : : .:. CCDS13 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVY 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE6 -KNGCHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFT : :.:. :: .. .: .:...:::.::.:: ::. ..:.:: .::..: : . CCDS13 FKPQYHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTISA 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE6 ARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENSV ::::. .: . ..: :: .::....:: .... :::..:: :. . : : . :: . CCDS13 ARLYYYWERDYR-RALCRLSQAGARVTIMDYEEFAYCWENFVYNEGQQFMPWYKFDENYA 130 140 150 160 170 180 190 pF1KE6 RLSRQLRRILLPLYEVDDLRDAFRTLGL : : :..:: CCDS13 FLHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHMGFLC 180 190 200 210 220 230 >>CCDS54531.1 APOBEC3H gene_id:164668|Hs108|chr22 (182 aa) initn: 330 init1: 235 opt: 369 Z-score: 492.9 bits: 97.9 E(32554): 3.9e-21 Smith-Waterman score: 369; 35.8% identity (63.6% similar) in 187 aa overlap (5-179:3-180) 10 20 30 40 50 pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRETY-----LCYVVKRRDSATSFSLDFGYLRNKNGC :.. . : ::.: : . :: : ::: . ....: ::..::. : CCDS54 MALLTAETFRLQFNNKR--RLRRPYYPRKALLCYQLTPQNGSTPTR---GYFENKKKC 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 HVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYF :.:. :. :.. :: .::.:: . .:::: .:: ...::.... .:.: ::..:::. CCDS54 HAEICFINEIKSMGLDETQCYQVTCYLTWSPCSSCAWELVDFIKAHDHLNLGIFASRLYY 60 70 80 90 100 110 120 130 140 150 160 pF1KE6 --CEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERT-----FKAWEGLHEN : : . .::: : . : . .: : .. ::..::. ::. .: : : .: CCDS54 HWC---KPQQKGLRLLCGSQVPVEVMGFPEFADCWENFVD-HEKPLSFNPYKMLEELDKN 120 130 140 150 160 170 180 190 pF1KE6 SVRLSRQLRRILLPLYEVDDLRDAFRTLGL : ..:.:.:: CCDS54 SRAIKRRLERIKS 170 180 198 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:04:46 2016 done: Tue Nov 8 11:04:47 2016 Total Scan time: 1.180 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]