FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE0296, 321 aa 1>>>pF1KE0296 321 - 321 aa - 321 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3468+/-0.000355; mu= 16.5690+/- 0.022 mean_var=84.1445+/-16.973, 0's: 0 Z-trim(115.8): 9 B-trim: 140 in 1/50 Lambda= 0.139817 statistics sampled from 26553 (26562) to 26553 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.311), width: 16 Scan time: 7.070 The best scores are: opt bits E(85289) NP_001035830 (OMIM: 172280) glycerol-3-phosphate p ( 321) 2133 439.9 3.4e-123 NP_064711 (OMIM: 609246) pyridoxal phosphate phosp ( 296) 519 114.3 3.3e-25 >>NP_001035830 (OMIM: 172280) glycerol-3-phosphate phosp (321 aa) initn: 2133 init1: 2133 opt: 2133 Z-score: 2332.7 bits: 439.9 E(85289): 3.4e-123 Smith-Waterman score: 2133; 100.0% identity (100.0% similar) in 321 aa overlap (1-321:1-321) 10 20 30 40 50 60 pF1KE0 MAAAEAGGDDARCVRLSAERAQALLADVDTLLFDCDGVLWRGETAVPGAPEALRALRARG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAAAEAGGDDARCVRLSAERAQALLADVDTLLFDCDGVLWRGETAVPGAPEALRALRARG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 KRLGFITNNSSKTRAAYAEKLRRLGFGGPAGPGASLEVFGTAYCTALYLRQRLAGAPAPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KRLGFITNNSSKTRAAYAEKLRRLGFGGPAGPGASLEVFGTAYCTALYLRQRLAGAPAPK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE0 AYVLGSPALAAELEAVGVASVGVGPEPLQGEGPGDWLHAPLEPDVRAVVVGFDPHFSYMK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AYVLGSPALAAELEAVGVASVGVGPEPLQGEGPGDWLHAPLEPDVRAVVVGFDPHFSYMK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE0 LTKALRYLQQPGCLLVGTNMDNRLPLENGRFIAGTGCLVRAVEMAAQRQADIIGKPSRFI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LTKALRYLQQPGCLLVGTNMDNRLPLENGRFIAGTGCLVRAVEMAAQRQADIIGKPSRFI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE0 FDCVSQEYGINPERTVMVGDRLDTDILLGATCGLKTILTLTGVSTLGDVKNNQESDCVSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FDCVSQEYGINPERTVMVGDRLDTDILLGATCGLKTILTLTGVSTLGDVKNNQESDCVSK 250 260 270 280 290 300 310 320 pF1KE0 KKMVPDFYVDSIADLLPALQG ::::::::::::::::::::: NP_001 KKMVPDFYVDSIADLLPALQG 310 320 >>NP_064711 (OMIM: 609246) pyridoxal phosphate phosphata (296 aa) initn: 828 init1: 458 opt: 519 Z-score: 573.7 bits: 114.3 E(85289): 3.3e-25 Smith-Waterman score: 864; 46.8% identity (69.2% similar) in 312 aa overlap (11-320:2-295) 10 20 30 40 50 60 pF1KE0 MAAAEAGGDDARCVRLSAERAQALLADVDTLLFDCDGVLWRGETAVPGAPEALRALRARG ::: :: . . .:. .. .::::::::: :: ::::::: :. : : NP_064 MARCERLRGAALRDVLGRAQGVLFDCDGVLWNGERAVPGAPELLERLARAG 10 20 30 40 50 70 80 90 100 110 pF1KE0 KRLGFITNNSSKTRAAYAEKLRRLGFGGPAGPGASLEVFGTAYCTALYLRQRLAGAP-AP : :..::: ..: : .. :::::: . ..:..: :.: ::::: : : :: NP_064 KAALFVSNNSRRARPELALRFARLGFGGLRAE----QLFSSALCAARLLRQRLPGPPDAP 60 70 80 90 100 120 130 140 150 160 170 pF1KE0 KA-YVLGSPALAAELEAVGVASVGVGPEPLQGEGPGDWLHAPLEPDVRAVVVGFDPHFSY : .:::. .: :::.:.:. .: .: :.: . : ::::.::.: :::. NP_064 GAVFVLGGEGLRAELRAAGLRLAG---DPSAGDGAA--------PRVRAVLVGYDEHFSF 110 120 130 140 150 180 190 200 210 220 230 pF1KE0 MKLTKALRYLQQPGCLLVGTNMDNRLPLENGRFIAGTGCLVRAVEMAAQRQADIIGKPSR :: .: .:..: ::::.:. : :: .: ::: :. ::: :. ::: ..:::: NP_064 AKLREACAHLRDPECLLVATDRDPWHPLSDGSRTPGTGSLAAAVETASGRQALVVGKPSP 160 170 180 190 200 210 240 250 260 270 280 290 pF1KE0 FIFDCVSQEYGINPERTVMVGDRLDTDILLGATCGLKTILTLTGVSTLGDVKNNQESDCV ..:.:......:.: ::.::::::.::::.: ::. :.::::::: : .. : . NP_064 YMFECITENFSIDPARTLMVGDRLETDILFGHRCGMTTVLTLTGVSRL---EEAQAYLAA 220 230 240 250 260 270 300 310 320 pF1KE0 SKKKMVPDFYVDSIADLLPALQG ... .:: .::.::::: .:. NP_064 GQHDLVPHYYVESIADLTEGLED 280 290 321 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 04:40:47 2016 done: Mon Nov 7 04:40:48 2016 Total Scan time: 7.070 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]