FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE0296, 321 aa 1>>>pF1KE0296 321 - 321 aa - 321 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6266+/-0.00076; mu= 14.8211+/- 0.046 mean_var=81.4626+/-16.517, 0's: 0 Z-trim(109.9): 14 B-trim: 0 in 0/50 Lambda= 0.142100 statistics sampled from 11186 (11195) to 11186 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.344), width: 16 Scan time: 2.670 The best scores are: opt bits E(32554) CCDS42104.1 PGP gene_id:283871|Hs108|chr16 ( 321) 2133 446.6 1.2e-125 CCDS13953.1 PDXP gene_id:57026|Hs108|chr22 ( 296) 519 115.7 4.6e-26 >>CCDS42104.1 PGP gene_id:283871|Hs108|chr16 (321 aa) initn: 2133 init1: 2133 opt: 2133 Z-score: 2369.2 bits: 446.6 E(32554): 1.2e-125 Smith-Waterman score: 2133; 100.0% identity (100.0% similar) in 321 aa overlap (1-321:1-321) 10 20 30 40 50 60 pF1KE0 MAAAEAGGDDARCVRLSAERAQALLADVDTLLFDCDGVLWRGETAVPGAPEALRALRARG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 MAAAEAGGDDARCVRLSAERAQALLADVDTLLFDCDGVLWRGETAVPGAPEALRALRARG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 KRLGFITNNSSKTRAAYAEKLRRLGFGGPAGPGASLEVFGTAYCTALYLRQRLAGAPAPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 KRLGFITNNSSKTRAAYAEKLRRLGFGGPAGPGASLEVFGTAYCTALYLRQRLAGAPAPK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE0 AYVLGSPALAAELEAVGVASVGVGPEPLQGEGPGDWLHAPLEPDVRAVVVGFDPHFSYMK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 AYVLGSPALAAELEAVGVASVGVGPEPLQGEGPGDWLHAPLEPDVRAVVVGFDPHFSYMK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE0 LTKALRYLQQPGCLLVGTNMDNRLPLENGRFIAGTGCLVRAVEMAAQRQADIIGKPSRFI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 LTKALRYLQQPGCLLVGTNMDNRLPLENGRFIAGTGCLVRAVEMAAQRQADIIGKPSRFI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE0 FDCVSQEYGINPERTVMVGDRLDTDILLGATCGLKTILTLTGVSTLGDVKNNQESDCVSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 FDCVSQEYGINPERTVMVGDRLDTDILLGATCGLKTILTLTGVSTLGDVKNNQESDCVSK 250 260 270 280 290 300 310 320 pF1KE0 KKMVPDFYVDSIADLLPALQG ::::::::::::::::::::: CCDS42 KKMVPDFYVDSIADLLPALQG 310 320 >>CCDS13953.1 PDXP gene_id:57026|Hs108|chr22 (296 aa) initn: 828 init1: 458 opt: 519 Z-score: 581.5 bits: 115.7 E(32554): 4.6e-26 Smith-Waterman score: 864; 46.8% identity (69.2% similar) in 312 aa overlap (11-320:2-295) 10 20 30 40 50 60 pF1KE0 MAAAEAGGDDARCVRLSAERAQALLADVDTLLFDCDGVLWRGETAVPGAPEALRALRARG ::: :: . . .:. .. .::::::::: :: ::::::: :. : : CCDS13 MARCERLRGAALRDVLGRAQGVLFDCDGVLWNGERAVPGAPELLERLARAG 10 20 30 40 50 70 80 90 100 110 pF1KE0 KRLGFITNNSSKTRAAYAEKLRRLGFGGPAGPGASLEVFGTAYCTALYLRQRLAGAP-AP : :..::: ..: : .. :::::: . ..:..: :.: ::::: : : :: CCDS13 KAALFVSNNSRRARPELALRFARLGFGGLRAE----QLFSSALCAARLLRQRLPGPPDAP 60 70 80 90 100 120 130 140 150 160 170 pF1KE0 KA-YVLGSPALAAELEAVGVASVGVGPEPLQGEGPGDWLHAPLEPDVRAVVVGFDPHFSY : .:::. .: :::.:.:. .: .: :.: . : ::::.::.: :::. CCDS13 GAVFVLGGEGLRAELRAAGLRLAG---DPSAGDGAA--------PRVRAVLVGYDEHFSF 110 120 130 140 150 180 190 200 210 220 230 pF1KE0 MKLTKALRYLQQPGCLLVGTNMDNRLPLENGRFIAGTGCLVRAVEMAAQRQADIIGKPSR :: .: .:..: ::::.:. : :: .: ::: :. ::: :. ::: ..:::: CCDS13 AKLREACAHLRDPECLLVATDRDPWHPLSDGSRTPGTGSLAAAVETASGRQALVVGKPSP 160 170 180 190 200 210 240 250 260 270 280 290 pF1KE0 FIFDCVSQEYGINPERTVMVGDRLDTDILLGATCGLKTILTLTGVSTLGDVKNNQESDCV ..:.:......:.: ::.::::::.::::.: ::. :.::::::: : .. : . CCDS13 YMFECITENFSIDPARTLMVGDRLETDILFGHRCGMTTVLTLTGVSRL---EEAQAYLAA 220 230 240 250 260 270 300 310 320 pF1KE0 SKKKMVPDFYVDSIADLLPALQG ... .:: .::.::::: .:. CCDS13 GQHDLVPHYYVESIADLTEGLED 280 290 321 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 04:40:46 2016 done: Mon Nov 7 04:40:47 2016 Total Scan time: 2.670 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]