FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE0590, 435 aa 1>>>pF1KE0590 435 - 435 aa - 435 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6134+/-0.000732; mu= 17.4100+/- 0.044 mean_var=83.8403+/-17.072, 0's: 0 Z-trim(110.8): 12 B-trim: 255 in 1/52 Lambda= 0.140071 statistics sampled from 11894 (11899) to 11894 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.366), width: 16 Scan time: 3.480 The best scores are: opt bits E(32554) CCDS10998.1 NXN gene_id:64359|Hs108|chr17 ( 435) 2921 599.7 1.9e-171 CCDS56013.1 NXN gene_id:64359|Hs108|chr17 ( 327) 2106 434.9 5.6e-122 >>CCDS10998.1 NXN gene_id:64359|Hs108|chr17 (435 aa) initn: 2921 init1: 2921 opt: 2921 Z-score: 3191.7 bits: 599.7 E(32554): 1.9e-171 Smith-Waterman score: 2921; 100.0% identity (100.0% similar) in 435 aa overlap (1-435:1-435) 10 20 30 40 50 60 pF1KE0 MSGFLEELLGEKLVTGGGEEVDVHSLGARGISLLGLYFGCSLSAPCAQLSASLAAFYGRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 MSGFLEELLGEKLVTGGGEEVDVHSLGARGISLLGLYFGCSLSAPCAQLSASLAAFYGRL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 RGDAAAGPGPGAGAGAAAEPEPRRRLEIVFVSSDQDQRQWQDFVRDMPWLALPYKEKHRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 RGDAAAGPGPGAGAGAAAEPEPRRRLEIVFVSSDQDQRQWQDFVRDMPWLALPYKEKHRK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE0 LKLWNKYRISNIPSLIFLDATTGKVVCRNGLLVIRDDPEGLEFPWGPKPFREVIAGPLLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 LKLWNKYRISNIPSLIFLDATTGKVVCRNGLLVIRDDPEGLEFPWGPKPFREVIAGPLLR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE0 NNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQNFEIIFVSADRSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 NNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQNFEIIFVSADRSE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE0 ESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIMLDPQGEVITRQGRVEVLNDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 ESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIMLDPQGEVITRQGRVEVLNDE 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE0 DCREFPWHPKPVLELSDSNAAQLNEGPCLVLFVDSEDDGESEAAKQLIQPIAEKIIAKYK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 DCREFPWHPKPVLELSDSNAAQLNEGPCLVLFVDSEDDGESEAAKQLIQPIAEKIIAKYK 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE0 AKEEEAPLLFFVAGEDDMTDSLRDYTNLPEAAPLLTILDMSARAKYVMDVEEITPAIVEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 AKEEEAPLLFFVAGEDDMTDSLRDYTNLPEAAPLLTILDMSARAKYVMDVEEITPAIVEA 370 380 390 400 410 420 430 pF1KE0 FVNDFLAEKLKPEPI ::::::::::::::: CCDS10 FVNDFLAEKLKPEPI 430 >>CCDS56013.1 NXN gene_id:64359|Hs108|chr17 (327 aa) initn: 2105 init1: 2105 opt: 2106 Z-score: 2303.4 bits: 434.9 E(32554): 5.6e-122 Smith-Waterman score: 2106; 98.8% identity (99.1% similar) in 321 aa overlap (118-435:7-327) 90 100 110 120 130 140 pF1KE0 IVFVSSDQDQRQWQDFVRDMPWLALPYKEKHRK---LKLWNKYRISNIPSLIFLDATTGK ::. :::::::::::::::::::::::: CCDS56 MADVSLHRNPATLKLWNKYRISNIPSLIFLDATTGK 10 20 30 150 160 170 180 190 200 pF1KE0 VVCRNGLLVIRDDPEGLEFPWGPKPFREVIAGPLLRNNGQSLESSSLEGSHVGVYFSAHW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 VVCRNGLLVIRDDPEGLEFPWGPKPFREVIAGPLLRNNGQSLESSSLEGSHVGVYFSAHW 40 50 60 70 80 90 210 220 230 240 250 260 pF1KE0 CPPCRSLTRVLVESYRKIKEAGQNFEIIFVSADRSEESFKQYFSEMPWLAVPYTDEARRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 CPPCRSLTRVLVESYRKIKEAGQNFEIIFVSADRSEESFKQYFSEMPWLAVPYTDEARRS 100 110 120 130 140 150 270 280 290 300 310 320 pF1KE0 RLNRLYGIQGIPTLIMLDPQGEVITRQGRVEVLNDEDCREFPWHPKPVLELSDSNAAQLN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 RLNRLYGIQGIPTLIMLDPQGEVITRQGRVEVLNDEDCREFPWHPKPVLELSDSNAAQLN 160 170 180 190 200 210 330 340 350 360 370 380 pF1KE0 EGPCLVLFVDSEDDGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDDMTDSLRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 EGPCLVLFVDSEDDGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDDMTDSLRD 220 230 240 250 260 270 390 400 410 420 430 pF1KE0 YTNLPEAAPLLTILDMSARAKYVMDVEEITPAIVEAFVNDFLAEKLKPEPI ::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 YTNLPEAAPLLTILDMSARAKYVMDVEEITPAIVEAFVNDFLAEKLKPEPI 280 290 300 310 320 435 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 14:25:59 2016 done: Mon Nov 7 14:26:00 2016 Total Scan time: 3.480 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]