(Linear) (Six-base) MAPSORT of: KIAA0002.seq Check: 4637 from: 1 to: 1644 KIAA0002.orf With 182 enzymes: SgfI * March 2, 2010 14:24 .. AccI GT'mk_AC Cuts at: 0 1175 1644 Size: 1175 469 AclI AA'CG_TT Cuts at: 0 1430 1644 Size: 1430 214 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 0 365 629 806 1472 1644 Size: 365 264 177 666 172 Fragments arranged by size: 666 365 264 177 172 AflIII A'CryG_T Cuts at: 0 1285 1644 Size: 1285 359 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 260 1644 Size: 260 1384 AlwNI CAG_nnn'CTG Cuts at: 0 1549 1644 Size: 1549 95 ApaI G_GGCC'C Cuts at: 0 1598 1644 Size: 1598 46 ApoI r'AATT_y Cuts at: 0 617 798 1644 Size: 617 181 846 Fragments arranged by size: 846 617 181 BaeI ACnnnnGTAyCnnnnnnn_nnnnn' Cuts at: 0 1061 1094 1644 Size: 1061 33 550 Fragments arranged by size: 1061 550 33 BanI G'GyrC_C Cuts at: 0 1108 1644 Size: 1108 536 BanII G_rGCy'C Cuts at: 0 330 628 1598 1644 Size: 330 298 970 46 Fragments arranged by size: 970 330 298 46 BbeI G_GCGC'C Cuts at: 0 1112 1644 Size: 1112 532 BbsI GAAGACnn'nnnn_ Cuts at: 0 972 1644 Size: 972 672 BbvCI CC'TCA_GC Cuts at: 0 1325 1644 Size: 1325 319 Bme1580I G_kGCm'C Cuts at: 0 1598 1644 Size: 1598 46 BmrI ACTGGGnnnn_n' Cuts at: 0 1632 1644 Size: 1632 12 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 344 1388 1644 Size: 344 1044 256 Fragments arranged by size: 1044 344 256 Bpu10I CC'TnA_GC Cuts at: 0 551 1325 1644 Size: 551 774 319 Fragments arranged by size: 774 551 319 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 28 1644 Size: 28 1616 BsaHI Gr'CG_yC Cuts at: 0 1109 1644 Size: 1109 535 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 0 172 202 1644 Size: 172 30 1442 Fragments arranged by size: 1442 172 30 BsiHKAI G_wGCw'C Cuts at: 0 330 1644 Size: 330 1314 Bsp1286I G_dGCh'C Cuts at: 0 330 628 1598 1644 Size: 330 298 970 46 Fragments arranged by size: 970 330 298 46 BspHI T'CATG_A Cuts at: 0 417 1644 Size: 417 1227 BstYI r'GATC_y Cuts at: 0 957 1644 Size: 957 687 BtsI GCAGTG_nn' Cuts at: 0 725 1644 Size: 725 919 EaeI y'GGCC_r Cuts at: 0 536 582 1644 Size: 536 46 1062 Fragments arranged by size: 1062 536 46 EarI CTCTTCn'nnn_ Cuts at: 0 71 648 908 1001 1644 Size: 71 577 260 93 643 Fragments arranged by size: 643 577 260 93 71 EcoICRI GAG'CTC Cuts at: 0 328 1644 Size: 328 1316 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 0 344 365 629 806 1388 1472 1644 Size: 344 21 264 177 582 84 172 Fragments arranged by size: 582 344 264 177 172 84 21 HaeII r_GCGC'y Cuts at: 0 7 1112 1644 Size: 7 1105 532 Fragments arranged by size: 1105 532 7 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 0 463 495 679 711 1644 Size: 463 32 184 32 933 Fragments arranged by size: 933 463 184 32 32 HindIII A'AGCT_T Cuts at: 0 101 541 1644 Size: 101 440 1103 Fragments arranged by size: 1103 440 101 KasI G'GCGC_C Cuts at: 0 1108 1644 Size: 1108 536 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 0 270 1044 1413 1644 Size: 270 774 369 231 Fragments arranged by size: 774 369 270 231 MscI TGG'CCA Cuts at: 0 538 1644 Size: 538 1106 MslI CAynn'nnrTG Cuts at: 0 590 934 1644 Size: 590 344 710 Fragments arranged by size: 710 590 344 MspA1I CmG'CkG Cuts at: 0 1588 1644 Size: 1588 56 NarI GG'CG_CC Cuts at: 0 1109 1644 Size: 1109 535 NdeI CA'TA_TG Cuts at: 0 138 272 1275 1644 Size: 138 134 1003 369 Fragments arranged by size: 1003 369 138 134 NspI r_CATG'y Cuts at: 0 560 1289 1476 1644 Size: 560 729 187 168 Fragments arranged by size: 729 560 187 168 PciI A'CATG_T Cuts at: 0 1285 1644 Size: 1285 359 PflMI CCAn_nnn'nTGG Cuts at: 0 1591 1644 Size: 1591 53 PfoI T'CCnGG_A Cuts at: 0 332 1290 1644 Size: 332 958 354 Fragments arranged by size: 958 354 332 PspOMI G'GGCC_C Cuts at: 0 1594 1644 Size: 1594 50 PsrI GAACnnnnnnTACnnnnnnn_nnnnn' Cuts at: 0 215 247 1644 Size: 215 32 1397 Fragments arranged by size: 1397 215 32 PstI C_TGCA'G Cuts at: 0 409 1545 1644 Size: 409 1136 99 Fragments arranged by size: 1136 409 99 PvuII CAG'CTG Cuts at: 0 1588 1644 Size: 1588 56 SacI G_AGCT'C Cuts at: 0 330 1644 Size: 330 1314 SapI GCTCTTCn'nnn_ Cuts at: 0 908 1001 1644 Size: 908 93 643 Fragments arranged by size: 908 643 93 ScaI AGT'ACT Cuts at: 0 1127 1644 Size: 1127 517 SfcI C'TryA_G Cuts at: 0 405 989 1139 1541 1644 Size: 405 584 150 402 103 Fragments arranged by size: 584 405 402 150 103 SfoI GGC'GCC Cuts at: 0 1110 1644 Size: 1110 534 SmlI C'TyrA_G Cuts at: 0 43 1644 Size: 43 1601 SphI G_CATG'C Cuts at: 0 560 1644 Size: 560 1084 SspI AAT'ATT Cuts at: 0 1513 1644 Size: 1513 131 StyI C'CwwG_G Cuts at: 0 17 1644 Size: 17 1627 TatI w'GTAC_w Cuts at: 0 231 722 1125 1407 1551 1644 Size: 231 491 403 282 144 93 Fragments arranged by size: 491 403 282 231 144 93 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 1001 1033 1644 Size: 1001 32 611 Fragments arranged by size: 1001 611 32 XbaI T'CTAG_A Cuts at: 0 1491 1644 Size: 1491 153 XmnI GAAnn'nnTTC Cuts at: 0 350 530 1340 1644 Size: 350 180 810 304 Fragments arranged by size: 810 350 304 180 Enzymes that do cut: AccI AclI AcuI AflIII AlfI AlwNI ApaI ApoI BaeI BanI BanII BbeI BbsI BbvCI Bme1580I BmrI BpmI Bpu10I BpuEI BsaHI BsaXI BsiHKAI Bsp1286I BspHI BstYI BtsI EaeI EarI EcoICRI Eco57MI HaeII Hin4I HindIII KasI MmeI MscI MslI MspA1I NarI NdeI NspI PciI PflMI PfoI PspOMI PsrI PstI PvuII SacI SapI ScaI SfcI SfoI SmlI SphI SspI StyI TatI TstI XbaI XmnI Enzymes that do not cut: AarI AatII Acc65I AfeI AflII AgeI AhdI AleI AloI ApaLI AscI AseI AsiSI AvaI AvrII BamHI BcgI BciVI BclI BfrBI BglI BglII BlpI BmgBI BmtI BplI BsaI BsaAI BsaBI BsaWI BseRI BseYI BsgI BsiEI BsiWI BsmI BsmBI BspEI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstZ17I Bsu36I BtgI BtgZI ClaI CspCI DraI DraIII DrdI EagI EciI EcoNI EcoO109I EcoRI EcoRV FalI FseI FspI FspAI HincII HpaI KpnI MfeI MluI NaeI NcoI NgoMIV NheI NotI NruI NsiI PacI PasI PmeI PmlI PpiI PpuMI PshAI PsiI PspXI PvuI RsrII SacII SalI SanDI SbfI SexAI SfiI SgfI SgrAI SmaI SnaBI SpeI SrfI StuI SwaI TaqII Tth111I XcmI XhoI XmaI ZraI