Result of FASTA (omim) for
pFN21AB8259
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8259, 299 aa
1>>>pF1KB8259 299 - 299 aa - 299 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1695+/-0.000327; mu= 9.2554+/- 0.021
mean_var=137.7925+/-29.011, 0's: 0 Z-trim(118.9): 41 B-trim: 1718 in 1/54
Lambda= 0.109260
statistics sampled from 32394 (32435) to 32394 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.38), width: 16
Scan time: 7.070
The best scores are: opt bits E(85289)
NP_003186 (OMIM: 604784) transcription elongation ( 299) 1981 323.0 4.3e-88
XP_005260286 (OMIM: 604784) PREDICTED: transcripti ( 324) 1960 319.8 4.6e-87
NP_942016 (OMIM: 604784) transcription elongation ( 272) 1817 297.2 2.4e-80
XP_016883525 (OMIM: 604784) PREDICTED: transcripti ( 272) 1817 297.2 2.4e-80
XP_016883526 (OMIM: 604784) PREDICTED: transcripti ( 272) 1817 297.2 2.4e-80
XP_011527324 (OMIM: 604784) PREDICTED: transcripti ( 297) 1796 293.9 2.6e-79
XP_011527329 (OMIM: 604784) PREDICTED: transcripti ( 297) 1796 293.9 2.6e-79
XP_011527325 (OMIM: 604784) PREDICTED: transcripti ( 297) 1796 293.9 2.6e-79
NP_006747 (OMIM: 601425) transcription elongation ( 301) 1304 216.3 5.8e-56
XP_011515880 (OMIM: 601425) PREDICTED: transcripti ( 266) 1158 193.3 4.5e-49
NP_958845 (OMIM: 601425) transcription elongation ( 280) 1129 188.7 1.1e-47
XP_006716530 (OMIM: 601425) PREDICTED: transcripti ( 254) 1100 184.1 2.4e-46
XP_016857693 (OMIM: 604128) PREDICTED: transcripti ( 327) 883 150.0 5.9e-36
NP_003187 (OMIM: 604128) transcription elongation ( 348) 870 148.0 2.6e-35
XP_016857691 (OMIM: 604128) PREDICTED: transcripti ( 466) 862 146.8 7.7e-35
XP_006710927 (OMIM: 604128) PREDICTED: transcripti ( 351) 849 144.7 2.6e-34
XP_011540355 (OMIM: 604128) PREDICTED: transcripti ( 364) 849 144.7 2.6e-34
XP_016857692 (OMIM: 604128) PREDICTED: transcripti ( 450) 849 144.7 3.1e-34
XP_016857690 (OMIM: 604128) PREDICTED: transcripti ( 466) 849 144.7 3.2e-34
XP_016857689 (OMIM: 604128) PREDICTED: transcripti ( 487) 849 144.8 3.3e-34
XP_016866115 (OMIM: 607789) PREDICTED: PHD finger (1308) 200 42.8 0.0045
XP_005248760 (OMIM: 607789) PREDICTED: PHD finger (1308) 200 42.8 0.0045
XP_005248759 (OMIM: 607789) PREDICTED: PHD finger (1951) 200 42.9 0.0061
NP_001277188 (OMIM: 607789) PHD finger protein 3 i (1951) 200 42.9 0.0061
NP_055968 (OMIM: 607789) PHD finger protein 3 isof (2039) 200 42.9 0.0063
XP_005248758 (OMIM: 607789) PREDICTED: PHD finger (2039) 200 42.9 0.0063
XP_006715489 (OMIM: 607789) PREDICTED: PHD finger (2039) 200 42.9 0.0063
XP_011533950 (OMIM: 607789) PREDICTED: PHD finger (2048) 200 42.9 0.0064
>>NP_003186 (OMIM: 604784) transcription elongation fact (299 aa)
initn: 1981 init1: 1981 opt: 1981 Z-score: 1702.4 bits: 323.0 E(85289): 4.3e-88
Smith-Waterman score: 1981; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299)
10 20 30 40 50 60
pF1KB8 MMGKEEEIARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MMGKEEEIARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 SDEEVIALAKSLIKSWKKLLDASDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SDEEVIALAKSLIKSWKKLLDASDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 STPRITTFPPVPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 STPRITTFPPVPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 TDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 TDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTK
190 200 210 220 230 240
250 260 270 280 290
pF1KB8 EAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 EAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC
250 260 270 280 290
>>XP_005260286 (OMIM: 604784) PREDICTED: transcription e (324 aa)
initn: 1960 init1: 1960 opt: 1960 Z-score: 1684.1 bits: 319.8 E(85289): 4.6e-87
Smith-Waterman score: 1960; 100.0% identity (100.0% similar) in 297 aa overlap (1-297:1-297)
10 20 30 40 50 60
pF1KB8 MMGKEEEIARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MMGKEEEIARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 SDEEVIALAKSLIKSWKKLLDASDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SDEEVIALAKSLIKSWKKLLDASDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 STPRITTFPPVPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 STPRITTFPPVPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 TDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTK
190 200 210 220 230 240
250 260 270 280 290
pF1KB8 EAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKVGE
250 260 270 280 290 300
XP_005 QAQAAPPSSILWRWGVSASVGSVV
310 320
>>NP_942016 (OMIM: 604784) transcription elongation fact (272 aa)
initn: 1817 init1: 1817 opt: 1817 Z-score: 1563.3 bits: 297.2 E(85289): 2.4e-80
Smith-Waterman score: 1817; 100.0% identity (100.0% similar) in 272 aa overlap (28-299:1-272)
10 20 30 40 50 60
pF1KB8 MMGKEEEIARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQS
:::::::::::::::::::::::::::::::::
NP_942 MDLLRELKAMPITLHLLQSTRVGMSVNALRKQS
10 20 30
70 80 90 100 110 120
pF1KB8 SDEEVIALAKSLIKSWKKLLDASDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_942 SDEEVIALAKSLIKSWKKLLDASDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAP
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 STPRITTFPPVPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_942 STPRITTFPPVPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGN
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 TDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_942 TDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTK
160 170 180 190 200 210
250 260 270 280 290
pF1KB8 EAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_942 EAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC
220 230 240 250 260 270
>>XP_016883525 (OMIM: 604784) PREDICTED: transcription e (272 aa)
initn: 1817 init1: 1817 opt: 1817 Z-score: 1563.3 bits: 297.2 E(85289): 2.4e-80
Smith-Waterman score: 1817; 100.0% identity (100.0% similar) in 272 aa overlap (28-299:1-272)
10 20 30 40 50 60
pF1KB8 MMGKEEEIARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQS
:::::::::::::::::::::::::::::::::
XP_016 MDLLRELKAMPITLHLLQSTRVGMSVNALRKQS
10 20 30
70 80 90 100 110 120
pF1KB8 SDEEVIALAKSLIKSWKKLLDASDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SDEEVIALAKSLIKSWKKLLDASDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAP
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 STPRITTFPPVPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 STPRITTFPPVPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGN
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 TDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTK
160 170 180 190 200 210
250 260 270 280 290
pF1KB8 EAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC
220 230 240 250 260 270
>>XP_016883526 (OMIM: 604784) PREDICTED: transcription e (272 aa)
initn: 1817 init1: 1817 opt: 1817 Z-score: 1563.3 bits: 297.2 E(85289): 2.4e-80
Smith-Waterman score: 1817; 100.0% identity (100.0% similar) in 272 aa overlap (28-299:1-272)
10 20 30 40 50 60
pF1KB8 MMGKEEEIARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQS
:::::::::::::::::::::::::::::::::
XP_016 MDLLRELKAMPITLHLLQSTRVGMSVNALRKQS
10 20 30
70 80 90 100 110 120
pF1KB8 SDEEVIALAKSLIKSWKKLLDASDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SDEEVIALAKSLIKSWKKLLDASDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAP
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 STPRITTFPPVPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 STPRITTFPPVPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGN
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 TDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTK
160 170 180 190 200 210
250 260 270 280 290
pF1KB8 EAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC
220 230 240 250 260 270
>>XP_011527324 (OMIM: 604784) PREDICTED: transcription e (297 aa)
initn: 1796 init1: 1796 opt: 1796 Z-score: 1544.9 bits: 293.9 E(85289): 2.6e-79
Smith-Waterman score: 1796; 100.0% identity (100.0% similar) in 270 aa overlap (28-297:1-270)
10 20 30 40 50 60
pF1KB8 MMGKEEEIARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQS
:::::::::::::::::::::::::::::::::
XP_011 MDLLRELKAMPITLHLLQSTRVGMSVNALRKQS
10 20 30
70 80 90 100 110 120
pF1KB8 SDEEVIALAKSLIKSWKKLLDASDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SDEEVIALAKSLIKSWKKLLDASDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAP
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 STPRITTFPPVPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 STPRITTFPPVPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGN
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 TDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTK
160 170 180 190 200 210
250 260 270 280 290
pF1KB8 EAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKVGE
220 230 240 250 260 270
XP_011 QAQAAPPSSILWRWGVSASVGSVV
280 290
>>XP_011527329 (OMIM: 604784) PREDICTED: transcription e (297 aa)
initn: 1796 init1: 1796 opt: 1796 Z-score: 1544.9 bits: 293.9 E(85289): 2.6e-79
Smith-Waterman score: 1796; 100.0% identity (100.0% similar) in 270 aa overlap (28-297:1-270)
10 20 30 40 50 60
pF1KB8 MMGKEEEIARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQS
:::::::::::::::::::::::::::::::::
XP_011 MDLLRELKAMPITLHLLQSTRVGMSVNALRKQS
10 20 30
70 80 90 100 110 120
pF1KB8 SDEEVIALAKSLIKSWKKLLDASDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SDEEVIALAKSLIKSWKKLLDASDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAP
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 STPRITTFPPVPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 STPRITTFPPVPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGN
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 TDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTK
160 170 180 190 200 210
250 260 270 280 290
pF1KB8 EAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKVGE
220 230 240 250 260 270
XP_011 QAQAAPPSSILWRWGVSASVGSVV
280 290
>>XP_011527325 (OMIM: 604784) PREDICTED: transcription e (297 aa)
initn: 1796 init1: 1796 opt: 1796 Z-score: 1544.9 bits: 293.9 E(85289): 2.6e-79
Smith-Waterman score: 1796; 100.0% identity (100.0% similar) in 270 aa overlap (28-297:1-270)
10 20 30 40 50 60
pF1KB8 MMGKEEEIARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQS
:::::::::::::::::::::::::::::::::
XP_011 MDLLRELKAMPITLHLLQSTRVGMSVNALRKQS
10 20 30
70 80 90 100 110 120
pF1KB8 SDEEVIALAKSLIKSWKKLLDASDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SDEEVIALAKSLIKSWKKLLDASDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAP
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 STPRITTFPPVPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 STPRITTFPPVPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGN
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 TDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTK
160 170 180 190 200 210
250 260 270 280 290
pF1KB8 EAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKVGE
220 230 240 250 260 270
XP_011 QAQAAPPSSILWRWGVSASVGSVV
280 290
>>NP_006747 (OMIM: 601425) transcription elongation fact (301 aa)
initn: 1266 init1: 940 opt: 1304 Z-score: 1125.7 bits: 216.3 E(85289): 5.8e-56
Smith-Waterman score: 1304; 66.8% identity (84.4% similar) in 301 aa overlap (5-299:2-301)
10 20 30 40 50 60
pF1KB8 MMGKEEEIARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQS
:.:..:.:...:::: ::.: ::.:::.::: .:.::.::::::.::::::.::::
NP_006 MEDEVVRFAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQS
10 20 30 40 50
70 80 90 100 110
pF1KB8 SDEEVIALAKSLIKSWKKLLDA-SDAKARERGRGMPLPTS-----SRDASEAPDPSRKRP
.:::: .::::::::::::::. : : .. . : :: .:. : . .:
NP_006 TDEEVTSLAKSLIKSWKKLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 ELPRAPSTPRITTFPPVPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECI
. : .: ...:: .: : :.:: ::::::.:::.: :..::::: :.:..:::: :
NP_006 DETNARDT-YVSSFPRAPSTSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAI
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 FRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEI
.... :::::::::::::::::::::::.::.::::: : :. .: ::.::::::::::.
NP_006 YQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEM
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 RKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGN
:: .:::::::::::.::::::::::::::.:::::::::::::.:::::::::::::::
NP_006 RKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGN
240 250 260 270 280 290
pF1KB8 RWKFC
:::::
NP_006 RWKFC
300
>>XP_011515880 (OMIM: 601425) PREDICTED: transcription e (266 aa)
initn: 1157 init1: 940 opt: 1158 Z-score: 1002.0 bits: 193.3 E(85289): 4.5e-49
Smith-Waterman score: 1158; 67.8% identity (83.5% similar) in 267 aa overlap (39-299:1-266)
10 20 30 40 50 60
pF1KB8 ARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIAL
.::.::::::.::::::.::::.:::: .:
XP_011 MTLELLQSTRIGMSVNAIRKQSTDEEVTSL
10 20 30
70 80 90 100 110 120
pF1KB8 AKSLIKSWKKLLDA-SDAKARERGRGMPLPTS-----SRDASEAPDPSRKRPELPRAPST
:::::::::::::. : : .. . : :: .:. : . .: . : .:
XP_011 AKSLIKSWKKLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDT
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 PRITTFPPVPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGNTD
...:: .: : :.:: ::::::.:::.: :..::::: :.:..:::: :.... :::
XP_011 -YVSSFPRAPSTSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTD
100 110 120 130 140
190 200 210 220 230 240
pF1KB8 MKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEA
::::::::::::::::::::.::.::::: : :. .: ::.::::::::::.:: .::::
XP_011 MKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEA
150 160 170 180 190 200
250 260 270 280 290
pF1KB8 IREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC
:::::::.::::::::::::::.:::::::::::::.::::::::::::::::::::
XP_011 IREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC
210 220 230 240 250 260
299 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 14:30:11 2016 done: Mon Nov 7 14:30:12 2016
Total Scan time: 7.070 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]