FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8118, 178 aa 1>>>pF1KB8118 178 - 178 aa - 178 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.1768+/-0.000284; mu= 4.9565+/- 0.018 mean_var=125.7245+/-25.150, 0's: 0 Z-trim(121.6): 8 B-trim: 310 in 1/58 Lambda= 0.114384 statistics sampled from 38374 (38402) to 38374 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.45), width: 16 Scan time: 6.320 The best scores are: opt bits E(85289) NP_065090 (OMIM: 615210) PEST proteolytic signal-c ( 178) 1154 200.4 1.3e-51 NP_001307327 (OMIM: 615210) PEST proteolytic signa ( 177) 1136 197.4 9.8e-51 NP_001307328 (OMIM: 615210) PEST proteolytic signa ( 158) 924 162.4 3e-40 NP_001307324 (OMIM: 615210) PEST proteolytic signa ( 130) 730 130.4 1.1e-30 XP_016862411 (OMIM: 615210) PREDICTED: PEST proteo ( 129) 712 127.4 8.8e-30 NP_001307330 (OMIM: 615210) PEST proteolytic signa ( 153) 588 107.0 1.5e-23 NP_001307329 (OMIM: 615210) PEST proteolytic signa ( 105) 573 104.4 6e-23 NP_001307326 (OMIM: 615210) PEST proteolytic signa ( 145) 516 95.1 5.3e-20 >>NP_065090 (OMIM: 615210) PEST proteolytic signal-conta (178 aa) initn: 1154 init1: 1154 opt: 1154 Z-score: 1047.8 bits: 200.4 E(85289): 1.3e-51 Smith-Waterman score: 1154; 100.0% identity (100.0% similar) in 178 aa overlap (1-178:1-178) 10 20 30 40 50 60 pF1KB8 MADGKAGDEKPEKSQRAGAAGGPEEEAEKPVKTKTVSSSNGGESSSRSAEKRSAEEEAAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_065 MADGKAGDEKPEKSQRAGAAGGPEEEAEKPVKTKTVSSSNGGESSSRSAEKRSAEEEAAD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 LPTKPTKISKFGFAIGSQTTKKASAISIKLGSSKPKETVPTLAPKTLSVAAAFNEDEDSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_065 LPTKPTKISKFGFAIGSQTTKKASAISIKLGSSKPKETVPTLAPKTLSVAAAFNEDEDSE 70 80 90 100 110 120 130 140 150 160 170 pF1KB8 PEEMPPEAKMRMKNIGRDTPTSAGPNSFNKGKHGFSDNQKLWERNIKSHLGNVHDQDN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_065 PEEMPPEAKMRMKNIGRDTPTSAGPNSFNKGKHGFSDNQKLWERNIKSHLGNVHDQDN 130 140 150 160 170 >>NP_001307327 (OMIM: 615210) PEST proteolytic signal-co (177 aa) initn: 580 init1: 580 opt: 1136 Z-score: 1031.8 bits: 197.4 E(85289): 9.8e-51 Smith-Waterman score: 1136; 99.4% identity (99.4% similar) in 178 aa overlap (1-178:1-177) 10 20 30 40 50 60 pF1KB8 MADGKAGDEKPEKSQRAGAAGGPEEEAEKPVKTKTVSSSNGGESSSRSAEKRSAEEEAAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MADGKAGDEKPEKSQRAGAAGGPEEEAEKPVKTKTVSSSNGGESSSRSAEKRSAEEEAAD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 LPTKPTKISKFGFAIGSQTTKKASAISIKLGSSKPKETVPTLAPKTLSVAAAFNEDEDSE ::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::: NP_001 LPTKPTKISKFGFAIGSQTTKKASAISIKLGSS-PKETVPTLAPKTLSVAAAFNEDEDSE 70 80 90 100 110 130 140 150 160 170 pF1KB8 PEEMPPEAKMRMKNIGRDTPTSAGPNSFNKGKHGFSDNQKLWERNIKSHLGNVHDQDN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PEEMPPEAKMRMKNIGRDTPTSAGPNSFNKGKHGFSDNQKLWERNIKSHLGNVHDQDN 120 130 140 150 160 170 >>NP_001307328 (OMIM: 615210) PEST proteolytic signal-co (158 aa) initn: 920 init1: 920 opt: 924 Z-score: 843.5 bits: 162.4 E(85289): 3e-40 Smith-Waterman score: 924; 92.9% identity (96.1% similar) in 155 aa overlap (26-178:4-158) 10 20 30 40 50 pF1KB8 MADGKAGDEKPEKSQRAGAAGGPEEEAEKPVK--TKTVSSSNGGESSSRSAEKRSAEEEA :. :.. .:. :: ::::::::::::::::::: NP_001 MLFEVAAPINLLSKNSSSCNGGESSSRSAEKRSAEEEA 10 20 30 60 70 80 90 100 110 pF1KB8 ADLPTKPTKISKFGFAIGSQTTKKASAISIKLGSSKPKETVPTLAPKTLSVAAAFNEDED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ADLPTKPTKISKFGFAIGSQTTKKASAISIKLGSSKPKETVPTLAPKTLSVAAAFNEDED 40 50 60 70 80 90 120 130 140 150 160 170 pF1KB8 SEPEEMPPEAKMRMKNIGRDTPTSAGPNSFNKGKHGFSDNQKLWERNIKSHLGNVHDQDN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SEPEEMPPEAKMRMKNIGRDTPTSAGPNSFNKGKHGFSDNQKLWERNIKSHLGNVHDQDN 100 110 120 130 140 150 >>NP_001307324 (OMIM: 615210) PEST proteolytic signal-co (130 aa) initn: 730 init1: 730 opt: 730 Z-score: 671.7 bits: 130.4 E(85289): 1.1e-30 Smith-Waterman score: 730; 100.0% identity (100.0% similar) in 118 aa overlap (1-118:1-118) 10 20 30 40 50 60 pF1KB8 MADGKAGDEKPEKSQRAGAAGGPEEEAEKPVKTKTVSSSNGGESSSRSAEKRSAEEEAAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MADGKAGDEKPEKSQRAGAAGGPEEEAEKPVKTKTVSSSNGGESSSRSAEKRSAEEEAAD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 LPTKPTKISKFGFAIGSQTTKKASAISIKLGSSKPKETVPTLAPKTLSVAAAFNEDEDSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LPTKPTKISKFGFAIGSQTTKKASAISIKLGSSKPKETVPTLAPKTLSVAAAFNEDEDGY 70 80 90 100 110 120 130 140 150 160 170 pF1KB8 PEEMPPEAKMRMKNIGRDTPTSAGPNSFNKGKHGFSDNQKLWERNIKSHLGNVHDQDN NP_001 TNISWTKLLQ 130 >>XP_016862411 (OMIM: 615210) PREDICTED: PEST proteolyti (129 aa) initn: 573 init1: 573 opt: 712 Z-score: 655.7 bits: 127.4 E(85289): 8.8e-30 Smith-Waterman score: 712; 99.2% identity (99.2% similar) in 118 aa overlap (1-118:1-117) 10 20 30 40 50 60 pF1KB8 MADGKAGDEKPEKSQRAGAAGGPEEEAEKPVKTKTVSSSNGGESSSRSAEKRSAEEEAAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MADGKAGDEKPEKSQRAGAAGGPEEEAEKPVKTKTVSSSNGGESSSRSAEKRSAEEEAAD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 LPTKPTKISKFGFAIGSQTTKKASAISIKLGSSKPKETVPTLAPKTLSVAAAFNEDEDSE ::::::::::::::::::::::::::::::::: :::::::::::::::::::::::: XP_016 LPTKPTKISKFGFAIGSQTTKKASAISIKLGSS-PKETVPTLAPKTLSVAAAFNEDEDGY 70 80 90 100 110 130 140 150 160 170 pF1KB8 PEEMPPEAKMRMKNIGRDTPTSAGPNSFNKGKHGFSDNQKLWERNIKSHLGNVHDQDN XP_016 TNISWTKLLQ 120 >>NP_001307330 (OMIM: 615210) PEST proteolytic signal-co (153 aa) initn: 616 init1: 588 opt: 588 Z-score: 544.0 bits: 107.0 E(85289): 1.5e-23 Smith-Waterman score: 937; 86.0% identity (86.0% similar) in 178 aa overlap (1-178:1-153) 10 20 30 40 50 60 pF1KB8 MADGKAGDEKPEKSQRAGAAGGPEEEAEKPVKTKTVSSSNGGESSSRSAEKRSAEEEAAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MADGKAGDEKPEKSQRAGAAGGPEEEAEKPVKTKTVSSSNGGESSSRSAEKRSAEEEAAD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 LPTKPTKISKFGFAIGSQTTKKASAISIKLGSSKPKETVPTLAPKTLSVAAAFNEDEDSE ::::::::::::::::::::::::::::::::: :: NP_001 LPTKPTKISKFGFAIGSQTTKKASAISIKLGSS-------------------------SE 70 80 90 130 140 150 160 170 pF1KB8 PEEMPPEAKMRMKNIGRDTPTSAGPNSFNKGKHGFSDNQKLWERNIKSHLGNVHDQDN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PEEMPPEAKMRMKNIGRDTPTSAGPNSFNKGKHGFSDNQKLWERNIKSHLGNVHDQDN 100 110 120 130 140 150 >>NP_001307329 (OMIM: 615210) PEST proteolytic signal-co (105 aa) initn: 573 init1: 573 opt: 573 Z-score: 533.0 bits: 104.4 E(85289): 6e-23 Smith-Waterman score: 573; 100.0% identity (100.0% similar) in 93 aa overlap (1-93:1-93) 10 20 30 40 50 60 pF1KB8 MADGKAGDEKPEKSQRAGAAGGPEEEAEKPVKTKTVSSSNGGESSSRSAEKRSAEEEAAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MADGKAGDEKPEKSQRAGAAGGPEEEAEKPVKTKTVSSSNGGESSSRSAEKRSAEEEAAD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 LPTKPTKISKFGFAIGSQTTKKASAISIKLGSSKPKETVPTLAPKTLSVAAAFNEDEDSE ::::::::::::::::::::::::::::::::: NP_001 LPTKPTKISKFGFAIGSQTTKKASAISIKLGSSGYTNISWTKLLQ 70 80 90 100 130 140 150 160 170 pF1KB8 PEEMPPEAKMRMKNIGRDTPTSAGPNSFNKGKHGFSDNQKLWERNIKSHLGNVHDQDN >>NP_001307326 (OMIM: 615210) PEST proteolytic signal-co (145 aa) initn: 945 init1: 487 opt: 516 Z-score: 480.1 bits: 95.1 E(85289): 5.3e-20 Smith-Waterman score: 883; 81.5% identity (81.5% similar) in 178 aa overlap (1-178:1-145) 10 20 30 40 50 60 pF1KB8 MADGKAGDEKPEKSQRAGAAGGPEEEAEKPVKTKTVSSSNGGESSSRSAEKRSAEEEAAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MADGKAGDEKPEKSQRAGAAGGPEEEAEKPVKTKTVSSSNGGESSSRSAEKRSAEEEAAD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 LPTKPTKISKFGFAIGSQTTKKASAISIKLGSSKPKETVPTLAPKTLSVAAAFNEDEDSE ::::::::::::::: :::::::::::: NP_001 LPTKPTKISKFGFAI---------------------------------VAAAFNEDEDSE 70 80 130 140 150 160 170 pF1KB8 PEEMPPEAKMRMKNIGRDTPTSAGPNSFNKGKHGFSDNQKLWERNIKSHLGNVHDQDN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PEEMPPEAKMRMKNIGRDTPTSAGPNSFNKGKHGFSDNQKLWERNIKSHLGNVHDQDN 90 100 110 120 130 140 178 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 14:30:41 2016 done: Mon Nov 7 14:30:42 2016 Total Scan time: 6.320 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]