FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8118, 178 aa 1>>>pF1KB8118 178 - 178 aa - 178 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.6791+/-0.000682; mu= 7.9076+/- 0.041 mean_var=116.4250+/-23.072, 0's: 0 Z-trim(113.9): 14 B-trim: 7 in 1/51 Lambda= 0.118864 statistics sampled from 14519 (14526) to 14519 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.446), width: 16 Scan time: 2.160 The best scores are: opt bits E(32554) CCDS2942.1 PCNP gene_id:57092|Hs108|chr3 ( 178) 1154 207.6 3.4e-54 >>CCDS2942.1 PCNP gene_id:57092|Hs108|chr3 (178 aa) initn: 1154 init1: 1154 opt: 1154 Z-score: 1086.4 bits: 207.6 E(32554): 3.4e-54 Smith-Waterman score: 1154; 100.0% identity (100.0% similar) in 178 aa overlap (1-178:1-178) 10 20 30 40 50 60 pF1KB8 MADGKAGDEKPEKSQRAGAAGGPEEEAEKPVKTKTVSSSNGGESSSRSAEKRSAEEEAAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 MADGKAGDEKPEKSQRAGAAGGPEEEAEKPVKTKTVSSSNGGESSSRSAEKRSAEEEAAD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 LPTKPTKISKFGFAIGSQTTKKASAISIKLGSSKPKETVPTLAPKTLSVAAAFNEDEDSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 LPTKPTKISKFGFAIGSQTTKKASAISIKLGSSKPKETVPTLAPKTLSVAAAFNEDEDSE 70 80 90 100 110 120 130 140 150 160 170 pF1KB8 PEEMPPEAKMRMKNIGRDTPTSAGPNSFNKGKHGFSDNQKLWERNIKSHLGNVHDQDN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 PEEMPPEAKMRMKNIGRDTPTSAGPNSFNKGKHGFSDNQKLWERNIKSHLGNVHDQDN 130 140 150 160 170 178 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 14:30:40 2016 done: Mon Nov 7 14:30:40 2016 Total Scan time: 2.160 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]