Result of FASTA (omim) for
pFN21AB6545
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6545, 365 aa
1>>>pF1KB6545 365 - 365 aa - 365 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8808+/-0.000393; mu= 14.7242+/- 0.024
mean_var=108.0012+/-21.780, 0's: 0 Z-trim(114.9): 107 B-trim: 24 in 1/54
Lambda= 0.123413
statistics sampled from 24855 (24972) to 24855 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.666), E-opt: 0.2 (0.293), width: 16
Scan time: 8.110
The best scores are: opt bits E(85289)
NP_057466 (OMIM: 180300,605554) natural killer cel ( 365) 2421 441.9 1.1e-123
NP_001160135 (OMIM: 180300,605554) natural killer ( 370) 2401 438.3 1.3e-122
XP_011507924 (OMIM: 180300,605554) PREDICTED: natu ( 329) 2131 390.2 3.5e-108
XP_011507923 (OMIM: 180300,605554) PREDICTED: natu ( 334) 2111 386.7 4.2e-107
XP_011507925 (OMIM: 180300,605554) PREDICTED: natu ( 167) 974 183.9 2.2e-46
NP_001160136 (OMIM: 180300,605554) natural killer ( 273) 972 183.8 4e-46
NP_003028 (OMIM: 603492) signaling lymphocytic act ( 335) 275 59.8 1.1e-08
NP_001171808 (OMIM: 604513) SLAM family member 5 i ( 345) 265 58.0 3.8e-08
NP_001317671 (OMIM: 604513) SLAM family member 5 i ( 339) 256 56.4 1.1e-07
XP_016857619 (OMIM: 603492) PREDICTED: signaling l ( 338) 236 52.8 1.3e-06
NP_001317683 (OMIM: 603492) signaling lymphocytic ( 357) 236 52.8 1.4e-06
NP_001248385 (OMIM: 600684) T-lymphocyte surface a ( 641) 232 52.4 3.5e-06
XP_016856788 (OMIM: 600684) PREDICTED: T-lymphocyt ( 688) 232 52.4 3.6e-06
XP_016856787 (OMIM: 600684) PREDICTED: T-lymphocyt ( 697) 232 52.4 3.7e-06
XP_005245513 (OMIM: 603492) PREDICTED: signaling l ( 305) 221 50.1 7.8e-06
XP_016856793 (OMIM: 600684) PREDICTED: T-lymphocyt ( 504) 223 50.7 8.8e-06
NP_002339 (OMIM: 600684) T-lymphocyte surface anti ( 655) 223 50.8 1.1e-05
XP_016856790 (OMIM: 600684) PREDICTED: T-lymphocyt ( 664) 223 50.8 1.1e-05
XP_016856789 (OMIM: 600684) PREDICTED: T-lymphocyt ( 678) 223 50.8 1.1e-05
XP_011507854 (OMIM: 600684) PREDICTED: T-lymphocyt ( 679) 223 50.8 1.1e-05
XP_011507852 (OMIM: 600684) PREDICTED: T-lymphocyt ( 701) 223 50.8 1.1e-05
XP_011507851 (OMIM: 600684) PREDICTED: T-lymphocyt ( 702) 223 50.8 1.1e-05
XP_011507850 (OMIM: 600684) PREDICTED: T-lymphocyt ( 703) 223 50.8 1.1e-05
XP_016856786 (OMIM: 600684) PREDICTED: T-lymphocyt ( 711) 223 50.8 1.1e-05
NP_001769 (OMIM: 109530) CD48 antigen isoform 1 pr ( 243) 207 47.5 3.7e-05
NP_443163 (OMIM: 606446) SLAM family member 6 isof ( 331) 206 47.5 5.3e-05
NP_001171643 (OMIM: 606446) SLAM family member 6 i ( 332) 204 47.1 6.8e-05
NP_067004 (OMIM: 606625) SLAM family member 7 isof ( 335) 204 47.1 6.8e-05
NP_001269521 (OMIM: 606625) SLAM family member 7 i ( 296) 203 46.9 7.1e-05
XP_016855704 (OMIM: 606446) PREDICTED: SLAM family ( 335) 203 46.9 7.7e-05
XP_011508397 (OMIM: 604513) PREDICTED: SLAM family ( 225) 200 46.2 8.4e-05
NP_001242959 (OMIM: 109530) CD48 antigen isoform 2 ( 252) 200 46.3 9.1e-05
XP_011508473 (OMIM: 109530) PREDICTED: CD48 antige ( 211) 197 45.7 0.00012
NP_001171644 (OMIM: 606446) SLAM family member 6 i ( 282) 195 45.4 0.00018
NP_001171810 (OMIM: 604513) SLAM family member 5 i ( 272) 193 45.1 0.00023
XP_016855705 (OMIM: 606446) PREDICTED: SLAM family ( 283) 193 45.1 0.00023
XP_011508207 (OMIM: 603492) PREDICTED: signaling l ( 196) 188 44.1 0.00033
NP_254273 (OMIM: 608589) SLAM family member 9 isof ( 289) 169 40.8 0.0046
XP_011525508 (OMIM: 109770) PREDICTED: carcinoembr ( 351) 166 40.4 0.0077
XP_011508131 (OMIM: 606625) PREDICTED: SLAM family ( 309) 165 40.1 0.0079
NP_001171745 (OMIM: 109770) carcinoembryonic antig ( 368) 166 40.4 0.008
XP_011508130 (OMIM: 606625) PREDICTED: SLAM family ( 348) 165 40.2 0.0086
NP_001171742 (OMIM: 109770) carcinoembryonic antig ( 430) 166 40.4 0.0089
NP_001171744 (OMIM: 109770) carcinoembryonic antig ( 461) 166 40.5 0.0094
NP_001020083 (OMIM: 109770) carcinoembryonic antig ( 464) 166 40.5 0.0094
NP_001192273 (OMIM: 109770) carcinoembryonic antig ( 468) 166 40.5 0.0095
>>NP_057466 (OMIM: 180300,605554) natural killer cell re (365 aa)
initn: 2421 init1: 2421 opt: 2421 Z-score: 2341.6 bits: 441.9 E(85289): 1.1e-123
Smith-Waterman score: 2421; 100.0% identity (100.0% similar) in 365 aa overlap (1-365:1-365)
10 20 30 40 50 60
pF1KB6 MLGQVVTLILLLLLKVYQGKGCQGSADHVVSISGVPLQLQPNSIQTKVDSIAWKKLLPSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MLGQVVTLILLLLLKVYQGKGCQGSADHVVSISGVPLQLQPNSIQTKVDSIAWKKLLPSQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 NGFHHILKWENGSLPSNTSNDRFSFIVKNLSLLIKAAQQQDSGLYCLEVTSISGKVQTAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 NGFHHILKWENGSLPSNTSNDRFSFIVKNLSLLIKAAQQQDSGLYCLEVTSISGKVQTAT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 FQVFVFDKVEKPRLQGQGKILDRGRCQVALSCLVSRDGNVSYAWYRGSKLIQTAGNLTYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 FQVFVFDKVEKPRLQGQGKILDRGRCQVALSCLVSRDGNVSYAWYRGSKLIQTAGNLTYL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 DEEVDINGTHTYTCNVSNPVSWESHTLNLTQDCQNAHQEFRFWPFLVIIVILSALFLGTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 DEEVDINGTHTYTCNVSNPVSWESHTLNLTQDCQNAHQEFRFWPFLVIIVILSALFLGTL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 ACFCVWRRKRKEKQSETSPKEFLTIYEDVKDLKTRRNHEQEQTFPGGGSTIYSMIQSQSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 ACFCVWRRKRKEKQSETSPKEFLTIYEDVKDLKTRRNHEQEQTFPGGGSTIYSMIQSQSS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 APTSQEPAYTLYSLIQPSRKSGSRKRNHSPSFNSTIYEVIGKSQPKAQNPARLSRKELEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 APTSQEPAYTLYSLIQPSRKSGSRKRNHSPSFNSTIYEVIGKSQPKAQNPARLSRKELEN
310 320 330 340 350 360
pF1KB6 FDVYS
:::::
NP_057 FDVYS
>>NP_001160135 (OMIM: 180300,605554) natural killer cell (370 aa)
initn: 1616 init1: 1616 opt: 2401 Z-score: 2322.3 bits: 438.3 E(85289): 1.3e-122
Smith-Waterman score: 2401; 98.6% identity (98.6% similar) in 370 aa overlap (1-365:1-370)
10 20 30 40 50 60
pF1KB6 MLGQVVTLILLLLLKVYQGKGCQGSADHVVSISGVPLQLQPNSIQTKVDSIAWKKLLPSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLGQVVTLILLLLLKVYQGKGCQGSADHVVSISGVPLQLQPNSIQTKVDSIAWKKLLPSQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 NGFHHILKWENGSLPSNTSNDRFSFIVKNLSLLIKAAQQQDSGLYCLEVTSISGKVQTAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NGFHHILKWENGSLPSNTSNDRFSFIVKNLSLLIKAAQQQDSGLYCLEVTSISGKVQTAT
70 80 90 100 110 120
130 140 150 160 170
pF1KB6 FQVFVF-----DKVEKPRLQGQGKILDRGRCQVALSCLVSRDGNVSYAWYRGSKLIQTAG
:::::: :::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FQVFVFESLLPDKVEKPRLQGQGKILDRGRCQVALSCLVSRDGNVSYAWYRGSKLIQTAG
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB6 NLTYLDEEVDINGTHTYTCNVSNPVSWESHTLNLTQDCQNAHQEFRFWPFLVIIVILSAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NLTYLDEEVDINGTHTYTCNVSNPVSWESHTLNLTQDCQNAHQEFRFWPFLVIIVILSAL
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB6 FLGTLACFCVWRRKRKEKQSETSPKEFLTIYEDVKDLKTRRNHEQEQTFPGGGSTIYSMI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FLGTLACFCVWRRKRKEKQSETSPKEFLTIYEDVKDLKTRRNHEQEQTFPGGGSTIYSMI
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB6 QSQSSAPTSQEPAYTLYSLIQPSRKSGSRKRNHSPSFNSTIYEVIGKSQPKAQNPARLSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QSQSSAPTSQEPAYTLYSLIQPSRKSGSRKRNHSPSFNSTIYEVIGKSQPKAQNPARLSR
310 320 330 340 350 360
360
pF1KB6 KELENFDVYS
::::::::::
NP_001 KELENFDVYS
370
>>XP_011507924 (OMIM: 180300,605554) PREDICTED: natural (329 aa)
initn: 2128 init1: 2128 opt: 2131 Z-score: 2063.2 bits: 390.2 E(85289): 3.5e-108
Smith-Waterman score: 2131; 99.4% identity (99.7% similar) in 324 aa overlap (1-324:1-323)
10 20 30 40 50 60
pF1KB6 MLGQVVTLILLLLLKVYQGKGCQGSADHVVSISGVPLQLQPNSIQTKVDSIAWKKLLPSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLGQVVTLILLLLLKVYQGKGCQGSADHVVSISGVPLQLQPNSIQTKVDSIAWKKLLPSQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 NGFHHILKWENGSLPSNTSNDRFSFIVKNLSLLIKAAQQQDSGLYCLEVTSISGKVQTAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NGFHHILKWENGSLPSNTSNDRFSFIVKNLSLLIKAAQQQDSGLYCLEVTSISGKVQTAT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 FQVFVFDKVEKPRLQGQGKILDRGRCQVALSCLVSRDGNVSYAWYRGSKLIQTAGNLTYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FQVFVFDKVEKPRLQGQGKILDRGRCQVALSCLVSRDGNVSYAWYRGSKLIQTAGNLTYL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 DEEVDINGTHTYTCNVSNPVSWESHTLNLTQDCQNAHQEFRFWPFLVIIVILSALFLGTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DEEVDINGTHTYTCNVSNPVSWESHTLNLTQDCQNAHQEFRFWPFLVIIVILSALFLGTL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 ACFCVWRRKRKEKQSETSPKEFLTIYEDVKDLKTRRNHEQEQTFPGGGSTIYSMIQSQSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ACFCVWRRKRKEKQSETSPKEFLTIYEDVKDLKTRRNHEQEQTFPGGGSTIYSMIQSQSS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 APTSQEPAYTLYSLIQPSRKSGSRKRNHSPSFNSTIYEVIGKSQPKAQNPARLSRKELEN
:::::::::::::::::::: :.:
XP_011 APTSQEPAYTLYSLIQPSRK-GDRFYSFSG
310 320
>>XP_011507923 (OMIM: 180300,605554) PREDICTED: natural (334 aa)
initn: 1323 init1: 1323 opt: 2111 Z-score: 2043.8 bits: 386.7 E(85289): 4.2e-107
Smith-Waterman score: 2111; 97.9% identity (98.2% similar) in 329 aa overlap (1-324:1-328)
10 20 30 40 50 60
pF1KB6 MLGQVVTLILLLLLKVYQGKGCQGSADHVVSISGVPLQLQPNSIQTKVDSIAWKKLLPSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLGQVVTLILLLLLKVYQGKGCQGSADHVVSISGVPLQLQPNSIQTKVDSIAWKKLLPSQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 NGFHHILKWENGSLPSNTSNDRFSFIVKNLSLLIKAAQQQDSGLYCLEVTSISGKVQTAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NGFHHILKWENGSLPSNTSNDRFSFIVKNLSLLIKAAQQQDSGLYCLEVTSISGKVQTAT
70 80 90 100 110 120
130 140 150 160 170
pF1KB6 FQVFVF-----DKVEKPRLQGQGKILDRGRCQVALSCLVSRDGNVSYAWYRGSKLIQTAG
:::::: :::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FQVFVFESLLPDKVEKPRLQGQGKILDRGRCQVALSCLVSRDGNVSYAWYRGSKLIQTAG
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB6 NLTYLDEEVDINGTHTYTCNVSNPVSWESHTLNLTQDCQNAHQEFRFWPFLVIIVILSAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NLTYLDEEVDINGTHTYTCNVSNPVSWESHTLNLTQDCQNAHQEFRFWPFLVIIVILSAL
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB6 FLGTLACFCVWRRKRKEKQSETSPKEFLTIYEDVKDLKTRRNHEQEQTFPGGGSTIYSMI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FLGTLACFCVWRRKRKEKQSETSPKEFLTIYEDVKDLKTRRNHEQEQTFPGGGSTIYSMI
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB6 QSQSSAPTSQEPAYTLYSLIQPSRKSGSRKRNHSPSFNSTIYEVIGKSQPKAQNPARLSR
::::::::::::::::::::::::: :.:
XP_011 QSQSSAPTSQEPAYTLYSLIQPSRK-GDRFYSFSG
310 320 330
>>XP_011507925 (OMIM: 180300,605554) PREDICTED: natural (167 aa)
initn: 974 init1: 974 opt: 974 Z-score: 953.7 bits: 183.9 E(85289): 2.2e-46
Smith-Waterman score: 974; 99.3% identity (100.0% similar) in 148 aa overlap (218-365:20-167)
190 200 210 220 230 240
pF1KB6 GTHTYTCNVSNPVSWESHTLNLTQDCQNAHQEFRFWPFLVIIVILSALFLGTLACFCVWR
.:::::::::::::::::::::::::::::
XP_011 MLGQVVTLILLLLLKVYQGKEFRFWPFLVIIVILSALFLGTLACFCVWR
10 20 30 40
250 260 270 280 290 300
pF1KB6 RKRKEKQSETSPKEFLTIYEDVKDLKTRRNHEQEQTFPGGGSTIYSMIQSQSSAPTSQEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RKRKEKQSETSPKEFLTIYEDVKDLKTRRNHEQEQTFPGGGSTIYSMIQSQSSAPTSQEP
50 60 70 80 90 100
310 320 330 340 350 360
pF1KB6 AYTLYSLIQPSRKSGSRKRNHSPSFNSTIYEVIGKSQPKAQNPARLSRKELENFDVYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AYTLYSLIQPSRKSGSRKRNHSPSFNSTIYEVIGKSQPKAQNPARLSRKELENFDVYS
110 120 130 140 150 160
>>NP_001160136 (OMIM: 180300,605554) natural killer cell (273 aa)
initn: 1799 init1: 972 opt: 972 Z-score: 949.0 bits: 183.8 E(85289): 4e-46
Smith-Waterman score: 1593; 74.8% identity (74.8% similar) in 365 aa overlap (1-365:1-273)
10 20 30 40 50 60
pF1KB6 MLGQVVTLILLLLLKVYQGKGCQGSADHVVSISGVPLQLQPNSIQTKVDSIAWKKLLPSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLGQVVTLILLLLLKVYQGKGCQGSADHVVSISGVPLQLQPNSIQTKVDSIAWKKLLPSQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 NGFHHILKWENGSLPSNTSNDRFSFIVKNLSLLIKAAQQQDSGLYCLEVTSISGKVQTAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NGFHHILKWENGSLPSNTSNDRFSFIVKNLSLLIKAAQQQDSGLYCLEVTSISGKVQTAT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 FQVFVFDKVEKPRLQGQGKILDRGRCQVALSCLVSRDGNVSYAWYRGSKLIQTAGNLTYL
::::::
NP_001 FQVFVF------------------------------------------------------
190 200 210 220 230 240
pF1KB6 DEEVDINGTHTYTCNVSNPVSWESHTLNLTQDCQNAHQEFRFWPFLVIIVILSALFLGTL
::::::::::::::::::::::
NP_001 --------------------------------------EFRFWPFLVIIVILSALFLGTL
130 140
250 260 270 280 290 300
pF1KB6 ACFCVWRRKRKEKQSETSPKEFLTIYEDVKDLKTRRNHEQEQTFPGGGSTIYSMIQSQSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ACFCVWRRKRKEKQSETSPKEFLTIYEDVKDLKTRRNHEQEQTFPGGGSTIYSMIQSQSS
150 160 170 180 190 200
310 320 330 340 350 360
pF1KB6 APTSQEPAYTLYSLIQPSRKSGSRKRNHSPSFNSTIYEVIGKSQPKAQNPARLSRKELEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 APTSQEPAYTLYSLIQPSRKSGSRKRNHSPSFNSTIYEVIGKSQPKAQNPARLSRKELEN
210 220 230 240 250 260
pF1KB6 FDVYS
:::::
NP_001 FDVYS
270
>>NP_003028 (OMIM: 603492) signaling lymphocytic activat (335 aa)
initn: 178 init1: 114 opt: 275 Z-score: 277.1 bits: 59.8 E(85289): 1.1e-08
Smith-Waterman score: 282; 24.1% identity (55.3% similar) in 320 aa overlap (1-315:35-330)
10 20 30
pF1KB6 MLGQVVTLILLLLLKVYQGKGCQGSADHVV
.: :. . .:: : .:. . : :.:
NP_003 GLLSLTFVLFLSLAFGASYGTGGRMMNCPKILRQLGSKVLLPLTYERINKSMNKSI-HIV
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB6 SISGVPLQLQPNSIQTKVDSIAWKKLLPSQNGFHHILKWENGSLPSNTSNDRFSFIVKNL
. :. ::...:. : : ::. : : .::..: ..::
NP_003 VTMAKSLE---NSVENKIVS-----LDPSEAG------------PPRYLGDRYKFYLENL
70 80 90 100
100 110 120 130 140 150
pF1KB6 SLLIKAAQQQDSGLYCLEVTSISGKVQTATFQVFVFDKVEKPRLQGQGKILDRGRCQVAL
.: :. ....: : : . . . . .:: .:. ....: :... .: . : : . :
NP_003 TLGIRESRKEDEGWYLMTLEK-NVSVQRFCLQLRLYEQVSTPEIKVLNKTQENGTCTLIL
110 120 130 140 150 160
160 170 180 190 200
pF1KB6 SCLVSRDGNVSYAWYR--GSKLIQTAGNLTYLDEEVDI-NGTHTYTCNVSNPVSWESHTL
.: : . .:.:.: . :.. .. :.. :. . .. . : :.::::.: .:.:.
NP_003 GCTVEKGDHVAYSWSEKAGTHPLNPANSSHLLSLTLGPQHADNIYICTVSNPISNNSQTF
170 180 190 200 210 220
210 220 230 240 250 260
pF1KB6 NLTQDCQNAHQEFRFWPFLVIIVILSALFLGTLACFCVWRRKRKEKQSETSPKEFLTIYE
. :.. .: . : . .. ..: .. . . :: . .. . : :. ::::
NP_003 SPWPGCRTDPSETKPWAVYAGLLGGVIMILIMVVILQLRRRGKTNHYQTTVEKKSLTIYA
230 240 250 260 270 280
270 280 290 300 310 320
pF1KB6 DVKDLKTRRNHEQEQTFPGGGSTIYSMIQSQSSAPTS-QEP-AYTLYSLIQPSRKSGSRK
.:. : ... ..::. .. . .: : :: . :.:. .
NP_003 QVQ--KPGPLQKKLDSFPAQDPCTTIYVAATEPVPESVQETNSITVYASVTLPES
290 300 310 320 330
330 340 350 360
pF1KB6 RNHSPSFNSTIYEVIGKSQPKAQNPARLSRKELENFDVYS
>>NP_001171808 (OMIM: 604513) SLAM family member 5 isofo (345 aa)
initn: 195 init1: 90 opt: 265 Z-score: 267.3 bits: 58.0 E(85289): 3.8e-08
Smith-Waterman score: 265; 24.0% identity (56.2% similar) in 354 aa overlap (9-340:8-344)
10 20 30 40 50
pF1KB6 MLGQVVTLILLLLLKVYQGKGCQGSADHVVSISGVPLQ--LQPNSIQT--KVDSIAWKKL
:::: :... . :. ... ...:. . : .:: .: :::
NP_001 MAQHHLWILLLCLQTWPEAA--GKDSEIFTVNGILGESVTFPVNIQEPRQVKIIAWT--
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 LPSQNGFHHILKWENGSLPSNTSN-----DRFSFIVKNLSLLIKAAQQQDSGLYCLEV-T
:... .. .. . : : . .:. . : .:.:. ...:.: : .. :
NP_001 --SKTSVAYVTPGDSETAPVVTVTHRNYYERIHALGPNYNLVISDLRMEDAGDYKADINT
60 70 80 90 100 110
120 130 140 150 160
pF1KB6 SISGKVQTATFQVFVFDKVEKPRLQGQGKILDRGRCQVALSCLVSRD-GNVSYAWYRGSK
. . . : ... .. .. ::.. . . :.:.:.: : .. ::.: : :
NP_001 QADPYTTTKRYNLQIYRRLGKPKITQSLMASVNSTCNVTLTCSVEKEEKNVTYNW---SP
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB6 LIQTAGNLTYLDEEVDINGTHTYTCNVSNPVSWESHTLNLTQDCQNAHQEFR--------
: . .. : .. : . ::::...:::: .: ... : : . . ::
NP_001 LGEEGNVLQIFQTPEDQE--LTYTCTAQNPVSNNSDSISARQLCADIAMGFRTHHTGLLS
180 190 200 210 220
230 240 250 260 270
pF1KB6 -FWPFLVIIVILSALFLGTLACFCVWRRKRKEKQSETSPKEFLTIYEDVKDLKTRRNH--
. :.....:::..:: : ...:.. . : : . .: . . :: ..
NP_001 VLAMFFLLVLILSSVFL-----FRLFKRRQGRIFPEGSCLNTFTKNPYAASKKTIYTYIM
230 240 250 260 270 280
280 290 300 310 320 330
pF1KB6 EQEQTFPGGGSTIYSMIQSQSSAPTSQEPAYTLYSLIQPSRKSGSRKRNHSPSFNSTIYE
...: :. : ::. : ... :...::. :.:: .: . : :. . . : ... ::
NP_001 ASRNTQPAE-SRIYDEILQSKVLPSKEEPVNTVYSEVQFADKMGKASTQDSKPPGTSSYE
290 300 310 320 330 340
340 350 360
pF1KB6 VIGKSQPKAQNPARLSRKELENFDVYS
..
NP_001 IVI
>>NP_001317671 (OMIM: 604513) SLAM family member 5 isofo (339 aa)
initn: 195 init1: 90 opt: 256 Z-score: 258.8 bits: 56.4 E(85289): 1.1e-07
Smith-Waterman score: 262; 23.3% identity (54.8% similar) in 356 aa overlap (9-340:8-338)
10 20 30 40 50
pF1KB6 MLGQVVTLILLLLLKVYQGKGCQGSADHVVSISGVPLQ--LQPNSIQT--KVDSIAWKKL
:::: :... . :. ... ...:. . : .:: .: :::
NP_001 MAQHHLWILLLCLQTWPEAA--GKDSEIFTVNGILGESVTFPVNIQEPRQVKIIAWT--
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 LPSQNGFHHILKWENGSLPSNTSN-----DRFSFIVKNLSLLIKAAQQQDSGLYCLEV-T
:... .. .. . : : . .:. . : .:.:. ...:.: : .. :
NP_001 --SKTSVAYVTPGDSETAPVVTVTHRNYYERIHALGPNYNLVISDLRMEDAGDYKADINT
60 70 80 90 100 110
120 130 140 150 160
pF1KB6 SISGKVQTATFQVFVFDKVEKPRLQGQGKILDRGRCQVALSCLVSRD-GNVSYAWYRGSK
. . . : ... .. .. ::.. . . :.:.:.: : .. ::.: : :
NP_001 QADPYTTTKRYNLQIYRRLGKPKITQSLMASVNSTCNVTLTCSVEKEEKNVTYNW---SP
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB6 LIQTAGNLTYLDEEVDINGTHTYTCNVSNPVSWESHTLNLTQDCQNAHQEFR--------
: . .. : .. : . ::::...:::: .: ... : : . . ::
NP_001 LGEEGNVLQIFQTPEDQE--LTYTCTAQNPVSNNSDSISARQLCADIAMGFRTHHTGLLS
180 190 200 210 220
230 240 250 260 270
pF1KB6 -FWPFLVIIVILSALFLGTLACFCVWRRKRKEKQSETSPKEFL----TIYEDVKDLKTRR
. :.....:::..:: : ...:.. . . . . ::: . . .:
NP_001 VLAMFFLLVLILSSVFL-----FRLFKRRQGSCLNTFTKNPYAASKKTIYTYI--MASRN
230 240 250 260 270 280
280 290 300 310 320 330
pF1KB6 NHEQEQTFPGGGSTIYSMIQSQSSAPTSQEPAYTLYSLIQPSRKSGSRKRNHSPSFNSTI
.. : : ::. : ... :...::. :.:: .: . : :. . . : ...
NP_001 TQPAE-------SRIYDEILQSKVLPSKEEPVNTVYSEVQFADKMGKASTQDSKPPGTSS
290 300 310 320 330
340 350 360
pF1KB6 YEVIGKSQPKAQNPARLSRKELENFDVYS
::..
NP_001 YEIVI
>>XP_016857619 (OMIM: 603492) PREDICTED: signaling lymph (338 aa)
initn: 109 init1: 78 opt: 236 Z-score: 239.5 bits: 52.8 E(85289): 1.3e-06
Smith-Waterman score: 244; 24.5% identity (54.4% similar) in 274 aa overlap (1-259:35-286)
10 20 30
pF1KB6 MLGQVVTLILLLLLKVYQGKGCQGSADHVV
.: :. . .:: : .:. . : :.:
XP_016 GLLSLTFVLFLSLAFGASYGTGGRMMNCPKILRQLGSKVLLPLTYERINKSMNKSI-HIV
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB6 SISGVPLQLQPNSIQTKVDSIAWKKLLPSQNGFHHILKWENGSLPSNTSNDRFSFIVKNL
. :. ::...:. : : ::. : : .::..: ..::
XP_016 VTMAKSLE---NSVENKIVS-----LDPSEAG------------PPRYLGDRYKFYLENL
70 80 90 100
100 110 120 130 140 150
pF1KB6 SLLIKAAQQQDSGLYCLEVTSISGKVQTATFQVFVFDKVEKPRLQGQGKILDRGRCQVAL
.: :. ....: : : . . . . .:: .:. ....: :... .: . : : . :
XP_016 TLGIRESRKEDEGWYLMTLEK-NVSVQRFCLQLRLYEQVSTPEIKVLNKTQENGTCTLIL
110 120 130 140 150 160
160 170 180 190 200
pF1KB6 SCLVSRDGNVSYAWYR--GSKLIQTAGNLTYLDEEVDI-NGTHTYTCNVSNPVSWESHTL
.: : . .:.:.: . :.. .. :.. :. . .. . : :.::::.: .:.:.
XP_016 GCTVEKGDHVAYSWSEKAGTHPLNPANSSHLLSLTLGPQHADNIYICTVSNPISNNSQTF
170 180 190 200 210 220
210 220 230 240 250
pF1KB6 NLTQDCQNAHQEFRFWP-----------FLVIIVILSALFLGTLACFC-VWRRKRKEKQS
. :.. .: . : .:...:::. .::. : .. ...
XP_016 SPWPGCRTDPSETKPWAVYAGLLGGVIMILIMVVILQLRRRATLTTTNQYWSQNVLTQDQ
230 240 250 260 270 280
260 270 280 290 300 310
pF1KB6 ETSPKEFLTIYEDVKDLKTRRNHEQEQTFPGGGSTIYSMIQSQSSAPTSQEPAYTLYSLI
: :
XP_016 ERCPGCLPMPLQKKLDSFPAQDPCTTIYVAATEPVPESVQETNSITVYASVTLPES
290 300 310 320 330
365 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 18:55:07 2016 done: Sat Nov 5 18:55:08 2016
Total Scan time: 8.110 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]