FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7522, 249 aa
  1>>>pF1KB7522 249 - 249 aa - 249 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6238+/-0.000383; mu= 13.6868+/- 0.024
 mean_var=73.6324+/-14.747, 0's: 0 Z-trim(113.1): 11  B-trim: 0 in 0/55
 Lambda= 0.149465
 statistics sampled from 22227 (22236) to 22227 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.638), E-opt: 0.2 (0.261), width:  16
 Scan time:  6.740

The best scores are:                                      opt bits E(85289)
NP_004119 (OMIM: 189969) general transcription fac ( 249) 1623 359.0 4.4e-99
XP_011533354 (OMIM: 189969) PREDICTED: general tra ( 275)  975 219.3 5.6e-57
XP_016876040 (OMIM: 189969) PREDICTED: general tra ( 149)  970 218.1   7e-57
XP_011533355 (OMIM: 189969) PREDICTED: general tra ( 131)  653 149.7 2.4e-36
XP_016876039 (OMIM: 189969) PREDICTED: general tra ( 193)  653 149.8 3.3e-36


>>NP_004119 (OMIM: 189969) general transcription factor   (249 aa)
 initn: 1623 init1: 1623 opt: 1623  Z-score: 1899.8  bits: 359.0 E(85289): 4.4e-99
Smith-Waterman score: 1623; 100.0% identity (100.0% similar) in 249 aa overlap (1-249:1-249)

               10        20        30        40        50        60
pF1KB7 MAERGELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQGRTEVSFTLNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MAERGELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQGRTEVSFTLNE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGKRARADK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGKRARADK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 QHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWELKPEYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 QHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWELKPEYR
              190       200       210       220       230       240

                
pF1KB7 HYQGEEKSD
       :::::::::
NP_004 HYQGEEKSD
                

>>XP_011533354 (OMIM: 189969) PREDICTED: general transcr  (275 aa)
 initn: 971 init1: 971 opt: 975  Z-score: 1144.0  bits: 219.3 E(85289): 5.6e-57
Smith-Waterman score: 1561; 90.5% identity (90.5% similar) in 275 aa overlap (1-249:1-275)

               10        20        30        40        50        60
pF1KB7 MAERGELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQGRTEVSFTLNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAERGELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQGRTEVSFTLNE
               10        20        30        40        50        60

               70        80        90       100                    
pF1KB7 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSS-------------------
       :::::::::::::::::::::::::::::::::::::::::                   
XP_011 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSGGSRMTAGVTTVISTSQAS
               70        80        90       100       110       120

                    110       120       130       140       150    
pF1KB7 -------DKLSLEGIVVQRAECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYK
              :::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KGKQDGEDKLSLEGIVVQRAECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYK
              130       140       150       160       170       180

          160       170       180       190       200       210    
pF1KB7 PVANHQYNIEYERKKKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVANHQYNIEYERKKKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLK
              190       200       210       220       230       240

          220       230       240         
pF1KB7 EILKEIGVQNVKGIHKNTWELKPEYRHYQGEEKSD
       :::::::::::::::::::::::::::::::::::
XP_011 EILKEIGVQNVKGIHKNTWELKPEYRHYQGEEKSD
              250       260       270     

>>XP_016876040 (OMIM: 189969) PREDICTED: general transcr  (149 aa)
 initn: 970 init1: 970 opt: 970  Z-score: 1142.1  bits: 218.1 E(85289): 7e-57
Smith-Waterman score: 970; 100.0% identity (100.0% similar) in 148 aa overlap (102-249:2-149)

              80        90       100       110       120       130 
pF1KB7 PASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAASENYMRLKRLQ
                                     ::::::::::::::::::::::::::::::
XP_016                              MDKLSLEGIVVQRAECRPAASENYMRLKRLQ
                                            10        20        30 

             140       150       160       170       180       190 
pF1KB7 IEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGKRARADKQHVLDMLFSAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGKRARADKQHVLDMLFSAF
              40        50        60        70        80        90 

             200       210       220       230       240         
pF1KB7 EKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWELKPEYRHYQGEEKSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWELKPEYRHYQGEEKSD
             100       110       120       130       140         

>>XP_011533355 (OMIM: 189969) PREDICTED: general transcr  (131 aa)
 initn: 653 init1: 653 opt: 653  Z-score: 773.6  bits: 149.7 E(85289): 2.4e-36
Smith-Waterman score: 653; 100.0% identity (100.0% similar) in 101 aa overlap (1-101:1-101)

               10        20        30        40        50        60
pF1KB7 MAERGELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQGRTEVSFTLNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAERGELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQGRTEVSFTLNE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA
       :::::::::::::::::::::::::::::::::::::::::                   
XP_011 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSGGSRMTAGVTTVISTSQAS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGKRARADK
                                                                   
XP_011 KGKQDGEGQSA                                                 
              130                                                  

>>XP_016876039 (OMIM: 189969) PREDICTED: general transcr  (193 aa)
 initn: 653 init1: 653 opt: 653  Z-score: 771.0  bits: 149.8 E(85289): 3.3e-36
Smith-Waterman score: 653; 100.0% identity (100.0% similar) in 101 aa overlap (1-101:1-101)

               10        20        30        40        50        60
pF1KB7 MAERGELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQGRTEVSFTLNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAERGELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQGRTEVSFTLNE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA
       :::::::::::::::::::::::::::::::::::::::::                   
XP_016 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSGGSRMTAGVTTVISTSQAS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGKRARADK
                                                                   
XP_016 KGKQDGEESFLVTQARVQWHDLGSQQPLPPGLKQLSCLSLLSNWDYKCALPTLANYCIFF
              130       140       150       160       170       180




249 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:06:36 2016 done: Sat Nov  5 18:06:37 2016
 Total Scan time:  6.740 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]