FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0621, 190 aa
  1>>>pF1KE0621 190 - 190 aa - 190 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7854+/-0.000841; mu= 11.4301+/- 0.051
 mean_var=101.7691+/-21.916, 0's: 0 Z-trim(108.6): 107  B-trim: 576 in 1/53
 Lambda= 0.127135
 statistics sampled from 10216 (10349) to 10216 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.318), width:  16
 Scan time:  1.830

The best scores are:                                      opt bits E(32554)
CCDS6839.1 RBM18 gene_id:92400|Hs108|chr9          ( 190) 1258 240.7 4.1e-64


>>CCDS6839.1 RBM18 gene_id:92400|Hs108|chr9               (190 aa)
 initn: 1258 init1: 1258 opt: 1258  Z-score: 1264.5  bits: 240.7 E(32554): 4.1e-64
Smith-Waterman score: 1258; 100.0% identity (100.0% similar) in 190 aa overlap (1-190:1-190)

               10        20        30        40        50        60
pF1KE0 MEAETKTLPLENASILSEGSLQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MEAETKTLPLENASILSEGSLQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SGALEGQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVVRWAHAQVKRYDHNKNDKIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 SGALEGQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVVRWAHAQVKRYDHNKNDKIL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 PISLEPSSSTEPTQSNLSVTAKIKAIEAKLKMMAENPDAEYPAAPVYSYFKPPDKKRTTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 PISLEPSSSTEPTQSNLSVTAKIKAIEAKLKMMAENPDAEYPAAPVYSYFKPPDKKRTTP
              130       140       150       160       170       180

              190
pF1KE0 YSRTAWKSRR
       ::::::::::
CCDS68 YSRTAWKSRR
              190




190 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:53:26 2016 done: Sat Nov  5 17:53:26 2016
 Total Scan time:  1.830 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]