Result of FASTA (omim) for
pFN21AB0936
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0936, 386 aa
1>>>pF1KB0936 386 - 386 aa - 386 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9976+/-0.000386; mu= 18.2374+/- 0.024
mean_var=62.6712+/-12.767, 0's: 0 Z-trim(112.5): 27 B-trim: 744 in 1/51
Lambda= 0.162009
statistics sampled from 21376 (21402) to 21376 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.625), E-opt: 0.2 (0.251), width: 16
Scan time: 8.530
The best scores are: opt bits E(85289)
NP_005495 (OMIM: 113520) branched-chain-amino-acid ( 386) 2634 624.4 1.3e-178
NP_001171564 (OMIM: 113520) branched-chain-amino-a ( 398) 2623 621.9 8.2e-178
NP_001171565 (OMIM: 113520) branched-chain-amino-a ( 385) 2621 621.4 1.1e-177
NP_001171563 (OMIM: 113520) branched-chain-amino-a ( 325) 1759 419.9 4.3e-117
NP_001171562 (OMIM: 113520) branched-chain-amino-a ( 349) 1759 419.9 4.6e-117
XP_016875257 (OMIM: 113520) PREDICTED: branched-ch ( 420) 1759 419.9 5.3e-117
NP_001181 (OMIM: 113530) branched-chain-amino-acid ( 392) 1537 368.0 2.1e-101
NP_001271254 (OMIM: 113530) branched-chain-amino-a ( 352) 1514 362.6 7.9e-100
NP_001158245 (OMIM: 113530) branched-chain-amino-a ( 300) 1285 309.1 9e-84
>>NP_005495 (OMIM: 113520) branched-chain-amino-acid ami (386 aa)
initn: 2634 init1: 2634 opt: 2634 Z-score: 3327.4 bits: 624.4 E(85289): 1.3e-178
Smith-Waterman score: 2634; 100.0% identity (100.0% similar) in 386 aa overlap (1-386:1-386)
10 20 30 40 50 60
pF1KB0 MKDCSNGCSAECTGEGGSKEVVGTFKAKDLIVTPATILKEKPDPNNLVFGTVFTDHMLTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MKDCSNGCSAECTGEGGSKEVVGTFKAKDLIVTPATILKEKPDPNNLVFGTVFTDHMLTV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 EWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQPNLNMDRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 EWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQPNLNMDRM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 YRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 YRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 ALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 ALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 GCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 WGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 WGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPK
310 320 330 340 350 360
370 380
pF1KB0 LASRILSKLTDIQYGREESDWTIVLS
::::::::::::::::::::::::::
NP_005 LASRILSKLTDIQYGREESDWTIVLS
370 380
>>NP_001171564 (OMIM: 113520) branched-chain-amino-acid (398 aa)
initn: 2623 init1: 2623 opt: 2623 Z-score: 3313.3 bits: 621.9 E(85289): 8.2e-178
Smith-Waterman score: 2623; 99.7% identity (100.0% similar) in 385 aa overlap (2-386:14-398)
10 20 30 40
pF1KB0 MKDCSNGCSAECTGEGGSKEVVGTFKAKDLIVTPATILKEKPDPNNLV
.::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASPLRSAAALARQDCSNGCSAECTGEGGSKEVVGTFKAKDLIVTPATILKEKPDPNNLV
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB0 FGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKI
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB0 RLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIG
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB0 TEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYG
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB0 SSLFAQCEAVDNGCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSLFAQCEAVDNGCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPG
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB0 VTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGE
310 320 330 340 350 360
350 360 370 380
pF1KB0 TIHIPTMENGPKLASRILSKLTDIQYGREESDWTIVLS
::::::::::::::::::::::::::::::::::::::
NP_001 TIHIPTMENGPKLASRILSKLTDIQYGREESDWTIVLS
370 380 390
>>NP_001171565 (OMIM: 113520) branched-chain-amino-acid (385 aa)
initn: 2621 init1: 2621 opt: 2621 Z-score: 3311.0 bits: 621.4 E(85289): 1.1e-177
Smith-Waterman score: 2621; 100.0% identity (100.0% similar) in 384 aa overlap (3-386:2-385)
10 20 30 40 50 60
pF1KB0 MKDCSNGCSAECTGEGGSKEVVGTFKAKDLIVTPATILKEKPDPNNLVFGTVFTDHMLTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDCSNGCSAECTGEGGSKEVVGTFKAKDLIVTPATILKEKPDPNNLVFGTVFTDHMLTV
10 20 30 40 50
70 80 90 100 110 120
pF1KB0 EWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQPNLNMDRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQPNLNMDRM
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB0 YRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTK
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB0 ALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDN
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB0 GCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQ
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB0 WGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPK
300 310 320 330 340 350
370 380
pF1KB0 LASRILSKLTDIQYGREESDWTIVLS
::::::::::::::::::::::::::
NP_001 LASRILSKLTDIQYGREESDWTIVLS
360 370 380
>>NP_001171563 (OMIM: 113520) branched-chain-amino-acid (325 aa)
initn: 1759 init1: 1759 opt: 1759 Z-score: 2223.2 bits: 419.9 E(85289): 4.3e-117
Smith-Waterman score: 2127; 89.8% identity (89.8% similar) in 361 aa overlap (26-386:2-325)
10 20 30 40 50 60
pF1KB0 MKDCSNGCSAECTGEGGSKEVVGTFKAKDLIVTPATILKEKPDPNNLVFGTVFTDHMLTV
:::::::::::::::::::::::::::::::::::
NP_001 MKAKDLIVTPATILKEKPDPNNLVFGTVFTDHMLTV
10 20 30
70 80 90 100 110 120
pF1KB0 EWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQPNLNMDRM
:::::::::::::::::::::::::::::::::
NP_001 EWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVE---------------------------
40 50 60
130 140 150 160 170 180
pF1KB0 YRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTK
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ----------VFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTK
70 80 90 100 110
190 200 210 220 230 240
pF1KB0 ALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDN
120 130 140 150 160 170
250 260 270 280 290 300
pF1KB0 GCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQ
180 190 200 210 220 230
310 320 330 340 350 360
pF1KB0 WGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPK
240 250 260 270 280 290
370 380
pF1KB0 LASRILSKLTDIQYGREESDWTIVLS
::::::::::::::::::::::::::
NP_001 LASRILSKLTDIQYGREESDWTIVLS
300 310 320
>>NP_001171562 (OMIM: 113520) branched-chain-amino-acid (349 aa)
initn: 1759 init1: 1759 opt: 1759 Z-score: 2222.7 bits: 419.9 E(85289): 4.6e-117
Smith-Waterman score: 2306; 90.4% identity (90.4% similar) in 386 aa overlap (1-386:1-349)
10 20 30 40 50 60
pF1KB0 MKDCSNGCSAECTGEGGSKEVVGTFKAKDLIVTPATILKEKPDPNNLVFGTVFTDHMLTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKDCSNGCSAECTGEGGSKEVVGTFKAKDLIVTPATILKEKPDPNNLVFGTVFTDHMLTV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 EWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQPNLNMDRM
:::::::::::::::::::::::::::::::::
NP_001 EWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVE---------------------------
70 80 90
130 140 150 160 170 180
pF1KB0 YRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTK
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ----------VFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTK
100 110 120 130 140
190 200 210 220 230 240
pF1KB0 ALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDN
150 160 170 180 190 200
250 260 270 280 290 300
pF1KB0 GCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQ
210 220 230 240 250 260
310 320 330 340 350 360
pF1KB0 WGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPK
270 280 290 300 310 320
370 380
pF1KB0 LASRILSKLTDIQYGREESDWTIVLS
::::::::::::::::::::::::::
NP_001 LASRILSKLTDIQYGREESDWTIVLS
330 340
>>XP_016875257 (OMIM: 113520) PREDICTED: branched-chain- (420 aa)
initn: 1759 init1: 1759 opt: 1759 Z-score: 2221.5 bits: 419.9 E(85289): 5.3e-117
Smith-Waterman score: 2295; 90.1% identity (90.4% similar) in 385 aa overlap (2-386:73-420)
10 20 30
pF1KB0 MKDCSNGCSAECTGEGGSKEVVGTFKAKDLI
.:::::::::::::::::::::::::::::
XP_016 RSVPLPLSAAPRPRSLPMASPLRSAAALARQDCSNGCSAECTGEGGSKEVVGTFKAKDLI
50 60 70 80 90 100
40 50 60 70 80 90
pF1KB0 VTPATILKEKPDPNNLVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VTPATILKEKPDPNNLVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYA
110 120 130 140 150 160
100 110 120 130 140 150
pF1KB0 VELFEGLKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEW
:: :::::::::::::::::::::
XP_016 VE-------------------------------------VFDKEELLECIQQLVKLDQEW
170 180
160 170 180 190 200 210
pF1KB0 VPYSTSASLYIRPTFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VPYSTSASLYIRPTFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYV
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB0 RAWKGGTGDCKMGGNYGSSLFAQCEAVDNGCQQVLWLYGEDHQITEVGTMNLFLYWINED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RAWKGGTGDCKMGGNYGSSLFAQCEAVDNGCQQVLWLYGEDHQITEVGTMNLFLYWINED
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB0 GEEELATPPLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GEEELATPPLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFGS
310 320 330 340 350 360
340 350 360 370 380
pF1KB0 GTACVVCPVSDILYKGETIHIPTMENGPKLASRILSKLTDIQYGREESDWTIVLS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GTACVVCPVSDILYKGETIHIPTMENGPKLASRILSKLTDIQYGREESDWTIVLS
370 380 390 400 410 420
>>NP_001181 (OMIM: 113530) branched-chain-amino-acid ami (392 aa)
initn: 1427 init1: 1427 opt: 1537 Z-score: 1941.6 bits: 368.0 E(85289): 2.1e-101
Smith-Waterman score: 1537; 58.6% identity (83.7% similar) in 367 aa overlap (16-381:23-388)
10 20 30 40 50
pF1KB0 MKDCSNGCSAECTGEGGSKEVVGTFKAKDLIVTPATILKEKPDPNN-LVFGTV
: . . ..::: :: . . ..:: :.. :::: .
NP_001 MAAAALGQIWARKLLSVPWLLCGPRRYASSSFKAADLQLEMTQKPHKKPGPGEPLVFGKT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB0 FTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQ
:::::: :::... :: .:.:.:.:::.:::.::.:::...::::.:::.: :...:::.
NP_001 FTDHMLMVEWNDK-GWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFR
70 80 90 100 110
120 130 140 150 160 170
pF1KB0 PNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPS
: :::::: :::.: :: ::: ::::::..:...:..::: ....:::.::..::.:::
NP_001 PWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPS
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB0 LGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLF
:::..::.:::::.: ::: :: .:. .:::: :.: ..::: ::.:. :.::::: ...
NP_001 LGVSQPTRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVL
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB0 AQCEAVDNGCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRR
.: ::. ::.::::::: :::.:::::::.:.:: .::: ::.::::.:.:::::.:.
NP_001 VQQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQ
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB0 CILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHI
.::.:. ::::.: :: .:: .: ::: .::::.::::::: :::: :::: ...::
NP_001 SLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILYKDRNLHI
300 310 320 330 340 350
360 370 380
pF1KB0 PTMENGPKLASRILSKLTDIQYGREESDWTIVLS
:::::::.: :. ..: .:::: . .:
NP_001 PTMENGPELILRFQKELKEIQYGIRAHEWMFPV
360 370 380 390
>>NP_001271254 (OMIM: 113530) branched-chain-amino-acid (352 aa)
initn: 1487 init1: 1406 opt: 1514 Z-score: 1913.2 bits: 362.6 E(85289): 7.9e-100
Smith-Waterman score: 1514; 60.9% identity (85.7% similar) in 343 aa overlap (40-381:7-348)
10 20 30 40 50 60
pF1KB0 AECTGEGGSKEVVGTFKAKDLIVTPATILKEKPDPNN-LVFGTVFTDHMLTVEWSSEFGW
.:: :.. :::: .:::::: :::... ::
NP_001 MTQKPHKKPGPGEPLVFGKTFTDHMLMVEWNDK-GW
10 20 30
70 80 90 100 110 120
pF1KB0 EKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQPNLNMDRMYRSAVRAT
.:.:.:.:::.:::.::.:::...::::.:::.: :...:::.: :::::: :::.:
NP_001 GQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLC
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB0 LPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALLFVLLS
:: ::: ::::::..:...:..::: ....:::.::..::.::::::..::.:::::.:
NP_001 LPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQPTRALLFVILC
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB0 PVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDNGCQQVLWL
::: :: .:. .:::: :.: ..::: ::.:. :.::::: ....: ::. ::.:::::
NP_001 PVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWL
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB0 YGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQWGEFKVSE
:: :::.:::::::.:.:: .::: ::.::::.:.:::::.:. .::.:. ::::.: :
NP_001 YGPDHQLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVE
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB0 RYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPKLASRILSK
: .:: .: ::: .::::.::::::: :::: :::: ...:::::::::.: :. ..
NP_001 RTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILYKDRNLHIPTMENGPELILRFQKE
280 290 300 310 320 330
370 380
pF1KB0 LTDIQYGREESDWTIVLS
: .:::: . .:
NP_001 LKEIQYGIRAHEWMFPV
340 350
>>NP_001158245 (OMIM: 113530) branched-chain-amino-acid (300 aa)
initn: 1274 init1: 1274 opt: 1285 Z-score: 1624.9 bits: 309.1 E(85289): 9e-84
Smith-Waterman score: 1285; 61.2% identity (85.1% similar) in 289 aa overlap (93-381:8-296)
70 80 90 100 110 120
pF1KB0 SSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQPNLNMDRMYR
.::::.:::.: :...:::.: :::::: :
NP_001 MAAAALGQLFEGMKAFKGKDQQVRLFRPWLNMDRMLR
10 20 30
130 140 150 160 170 180
pF1KB0 SAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKAL
::.: :: ::: ::::::..:...:..::: ....:::.::..::.::::::..::.::
NP_001 SAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQPTRAL
40 50 60 70 80 90
190 200 210 220 230 240
pF1KB0 LFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDNGC
:::.: ::: :: .:. .:::: :.: ..::: ::.:. :.::::: ....: ::. ::
NP_001 LFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGC
100 110 120 130 140 150
250 260 270 280 290 300
pF1KB0 QQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQWG
.::::::: :::.:::::::.:.:: .::: ::.::::.:.:::::.:. .::.:. ::
NP_001 EQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWG
160 170 180 190 200 210
310 320 330 340 350 360
pF1KB0 EFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPKLA
::.: :: .:: .: ::: .::::.::::::: :::: :::: ...:::::::::.:
NP_001 EFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILYKDRNLHIPTMENGPELI
220 230 240 250 260 270
370 380
pF1KB0 SRILSKLTDIQYGREESDWTIVLS
:. ..: .:::: . .:
NP_001 LRFQKELKEIQYGIRAHEWMFPV
280 290 300
386 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 17:52:22 2016 done: Sat Nov 5 17:52:23 2016
Total Scan time: 8.530 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]