Result of FASTA (ccds) for
pFN21AB0977
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0977, 188 aa
1>>>pF1KB0977 188 - 188 aa - 188 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3889+/-0.000857; mu= 9.5513+/- 0.052
mean_var=129.3187+/-26.398, 0's: 0 Z-trim(111.0): 28 B-trim: 0 in 0/53
Lambda= 0.112783
statistics sampled from 12042 (12063) to 12042 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.751), E-opt: 0.2 (0.371), width: 16
Scan time: 2.020
The best scores are: opt bits E(32554)
CCDS14289.1 SSX5 gene_id:6758|Hs108|chrX ( 188) 1282 219.0 1.4e-57
CCDS14288.1 SSX5 gene_id:6758|Hs108|chrX ( 229) 1130 194.3 4.5e-50
CCDS14291.1 SSX3 gene_id:10214|Hs108|chrX ( 188) 1102 189.7 9.1e-49
CCDS14344.2 SSX2 gene_id:6757|Hs108|chrX ( 188) 1093 188.2 2.5e-48
CCDS48129.1 SSX2B gene_id:727837|Hs108|chrX ( 188) 1093 188.2 2.5e-48
CCDS14343.1 SSX7 gene_id:280658|Hs108|chrX ( 188) 1067 184.0 4.7e-47
CCDS35241.1 SSX4B gene_id:548313|Hs108|chrX ( 188) 1000 173.1 9e-44
CCDS35240.1 SSX4 gene_id:6759|Hs108|chrX ( 188) 1000 173.1 9e-44
CCDS14290.1 SSX1 gene_id:6756|Hs108|chrX ( 188) 991 171.6 2.5e-43
CCDS65267.1 SSX2B gene_id:727837|Hs108|chrX ( 223) 887 154.8 3.5e-38
CCDS14345.2 SSX2 gene_id:6757|Hs108|chrX ( 223) 887 154.8 3.5e-38
CCDS43934.1 SSX4 gene_id:6759|Hs108|chrX ( 153) 584 105.3 1.9e-23
CCDS43935.1 SSX4B gene_id:548313|Hs108|chrX ( 153) 584 105.3 1.9e-23
>>CCDS14289.1 SSX5 gene_id:6758|Hs108|chrX (188 aa)
initn: 1282 init1: 1282 opt: 1282 Z-score: 1147.3 bits: 219.0 E(32554): 1.4e-57
Smith-Waterman score: 1282; 99.5% identity (100.0% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB0 MNGDDAFVRRPRVGSQIPQKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::
CCDS14 MNGDDAFVRRPRVGSQIPEKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
130 140 150 160 170 180
pF1KB0 SDPQEDDE
::::::::
CCDS14 SDPQEDDE
>>CCDS14288.1 SSX5 gene_id:6758|Hs108|chrX (229 aa)
initn: 1130 init1: 1130 opt: 1130 Z-score: 1012.5 bits: 194.3 E(32554): 4.5e-50
Smith-Waterman score: 1130; 99.4% identity (100.0% similar) in 166 aa overlap (23-188:64-229)
10 20 30 40 50
pF1KB0 MNGDDAFVRRPRVGSQIPQKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMK
.:::::::::::::::::::::::::::::
CCDS14 IHLVNLSPFWKVGREPASSIKALLCGRGEARAFDDIAKYFSEKEWEKMKASEKIIYVYMK
40 50 60 70 80 90
60 70 80 90 100 110
pF1KB0 RKYEAMTKLGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 RKYEAMTKLGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKIT
100 110 120 130 140 150
120 130 140 150 160 170
pF1KB0 PEKPAEEGNDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PEKPAEEGNDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERK
160 170 180 190 200 210
180
pF1KB0 QLVIYEEISDPQEDDE
::::::::::::::::
CCDS14 QLVIYEEISDPQEDDE
220
>>CCDS14291.1 SSX3 gene_id:10214|Hs108|chrX (188 aa)
initn: 1102 init1: 1102 opt: 1102 Z-score: 989.0 bits: 189.7 E(32554): 9.1e-49
Smith-Waterman score: 1102; 84.0% identity (94.1% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB0 MNGDDAFVRRPRVGSQIPQKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
:::::.:.::: ::.:::.:.::::::::::::..::::::.::::.:::::::::::::
CCDS14 MNGDDTFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKVSEKIVYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
::::: :: :::::::.:::::::::::::::::..::::::::::::::: :.::::::
CCDS14 LGFKAILPSFMRNKRVTDFQGNDFDNDPNRGNQVQRPQMTFGRLQGIFPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
: :: :::::::::.:::: : :: .::::.: ::::::.::::::.::::::::::::
CCDS14 NVSKEVPEASGPQNDGKQLCPPGKPTTSEKINMISGPKRGEHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB0 SDPQEDDE
:::.::::
CCDS14 SDPEEDDE
>>CCDS14344.2 SSX2 gene_id:6757|Hs108|chrX (188 aa)
initn: 1093 init1: 1093 opt: 1093 Z-score: 981.1 bits: 188.2 E(32554): 2.5e-48
Smith-Waterman score: 1093; 83.5% identity (94.7% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB0 MNGDDAFVRRPRVGSQIPQKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
:::::::.::: ::.:::.:.::::::::::::..:::::::::::.:::::::::::::
CCDS14 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
::::::::::: :::. ::::::.:::::::::::.::::::::::: ::: :.::::::
CCDS14 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
:::. :::::::::.::.: : :: .::::... ::::::.::::::.::::::::::::
CCDS14 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB0 SDPQEDDE
:::.::::
CCDS14 SDPEEDDE
>>CCDS48129.1 SSX2B gene_id:727837|Hs108|chrX (188 aa)
initn: 1093 init1: 1093 opt: 1093 Z-score: 981.1 bits: 188.2 E(32554): 2.5e-48
Smith-Waterman score: 1093; 83.5% identity (94.7% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB0 MNGDDAFVRRPRVGSQIPQKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
:::::::.::: ::.:::.:.::::::::::::..:::::::::::.:::::::::::::
CCDS48 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
::::::::::: :::. ::::::.:::::::::::.::::::::::: ::: :.::::::
CCDS48 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
:::. :::::::::.::.: : :: .::::... ::::::.::::::.::::::::::::
CCDS48 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB0 SDPQEDDE
:::.::::
CCDS48 SDPEEDDE
>>CCDS14343.1 SSX7 gene_id:280658|Hs108|chrX (188 aa)
initn: 1067 init1: 1067 opt: 1067 Z-score: 958.2 bits: 184.0 E(32554): 4.7e-47
Smith-Waterman score: 1067; 82.4% identity (93.6% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB0 MNGDDAFVRRPRVGSQIPQKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
:::::::.::::.:.:::.:.::.:::::::::.:::::::. ::: :::::::::::::
CCDS14 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
:::::::::::.: ..:.:::::::: :.:::::.::::: ::: ::::: :.::::::
CCDS14 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
::::::::::: ::.::.: : :: .::::.::::::::::::::::.::::::::::::
CCDS14 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB0 SDPQEDDE
:::.::::
CCDS14 SDPEEDDE
>>CCDS35241.1 SSX4B gene_id:548313|Hs108|chrX (188 aa)
initn: 1000 init1: 1000 opt: 1000 Z-score: 899.3 bits: 173.1 E(32554): 9e-44
Smith-Waterman score: 1000; 77.7% identity (90.4% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB0 MNGDDAFVRRPRVGSQIPQKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
:::::::.:::: .:: .:..:::::::::::.:::::::.::::.::::: .::.:::
CCDS35 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
::::.:::::::.::.:::.:::: :: :. ::::.:::::: :: ::::: :.:::::
CCDS35 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
: : :::::::::.:::: : :. .: ::.::::::::::::::::.:::::::.::::
CCDS35 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
130 140 150 160 170 180
pF1KB0 SDPQEDDE
:::.::::
CCDS35 SDPEEDDE
>>CCDS35240.1 SSX4 gene_id:6759|Hs108|chrX (188 aa)
initn: 1000 init1: 1000 opt: 1000 Z-score: 899.3 bits: 173.1 E(32554): 9e-44
Smith-Waterman score: 1000; 77.7% identity (90.4% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB0 MNGDDAFVRRPRVGSQIPQKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
:::::::.:::: .:: .:..:::::::::::.:::::::.::::.::::: .::.:::
CCDS35 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
::::.:::::::.::.:::.:::: :: :. ::::.:::::: :: ::::: :.:::::
CCDS35 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
: : :::::::::.:::: : :. .: ::.::::::::::::::::.:::::::.::::
CCDS35 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
130 140 150 160 170 180
pF1KB0 SDPQEDDE
:::.::::
CCDS35 SDPEEDDE
>>CCDS14290.1 SSX1 gene_id:6756|Hs108|chrX (188 aa)
initn: 991 init1: 991 opt: 991 Z-score: 891.4 bits: 171.6 E(32554): 2.5e-43
Smith-Waterman score: 991; 76.6% identity (89.4% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB0 MNGDDAFVRRPRVGSQIPQKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
:::::.:..::: .. .: .::::::: :::.:::.::: :::: ::::::.:.::::
CCDS14 MNGDDTFAKRPRDDAKASEKRSKAFDDIATYFSKKEWKKMKYSEKISYVYMKRNYKAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
::::.:::::: ::...:::::::::: :: ::::::::::::. :.::: :.::::.
CCDS14 LGFKVTLPPFMCNKQATDFQGNDFDNDHNRRIQVEHPQMTFGRLHRIIPKIMPKKPAEDE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
:::::: :::::::.::::.: :: : :::.:: :::::::::::::.::::::::::::
CCDS14 NDSKGVSEASGPQNDGKQLHPPGKANISEKINKRSGPKRGKHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB0 SDPQEDDE
:::.::::
CCDS14 SDPEEDDE
>>CCDS65267.1 SSX2B gene_id:727837|Hs108|chrX (223 aa)
initn: 964 init1: 885 opt: 887 Z-score: 799.0 bits: 154.8 E(32554): 3.5e-38
Smith-Waterman score: 887; 77.2% identity (91.6% similar) in 167 aa overlap (1-167:1-167)
10 20 30 40 50 60
pF1KB0 MNGDDAFVRRPRVGSQIPQKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
:::::::.::: ::.:::.:.::::::::::::..:::::::::::.:::::::::::::
CCDS65 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
::::::::::: :::. ::::::.:::::::::::.::::::::::: ::: :.::::::
CCDS65 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
:::. :::::::::.::.: : :: .::::... :: ..... .:
CCDS65 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGNREAQEKEERRGTAHRWSSQNTHN
130 140 150 160 170 180
pF1KB0 SDPQEDDE
CCDS65 IGRFSLSTSMGAVHGTPKTITHNRDPKGGNMPGPTDCVRENSW
190 200 210 220
188 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 17:38:09 2016 done: Sat Nov 5 17:38:10 2016
Total Scan time: 2.020 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]