Result of FASTA (omim) for
pFN21AB0974
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0974, 437 aa
1>>>pF1KB0974 437 - 437 aa - 437 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1737+/-0.000311; mu= 14.3067+/- 0.019
mean_var=102.3210+/-19.884, 0's: 0 Z-trim(119.3): 46 B-trim: 73 in 1/52
Lambda= 0.126792
statistics sampled from 33112 (33159) to 33112 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.743), E-opt: 0.2 (0.389), width: 16
Scan time: 10.390
The best scores are: opt bits E(85289)
NP_065139 (OMIM: 162860) CD177 antigen precursor [ ( 437) 3056 569.3 7e-162
XP_016882510 (OMIM: 162860) PREDICTED: CD177 antig ( 467) 2844 530.5 3.5e-150
XP_016882511 (OMIM: 162860) PREDICTED: CD177 antig ( 412) 2830 527.9 1.9e-149
NP_001123483 (OMIM: 612665) testis-expressed seque ( 249) 430 88.7 1.8e-17
NP_113639 (OMIM: 612665) testis-expressed sequence ( 267) 430 88.8 1.9e-17
XP_005259360 (OMIM: 612665) PREDICTED: testis-expr ( 305) 430 88.8 2.1e-17
NP_055215 (OMIM: 609484) ly6/PLAUR domain-containi ( 346) 173 41.8 0.0033
>>NP_065139 (OMIM: 162860) CD177 antigen precursor [Homo (437 aa)
initn: 3056 init1: 3056 opt: 3056 Z-score: 3027.3 bits: 569.3 E(85289): 7e-162
Smith-Waterman score: 3056; 99.1% identity (99.5% similar) in 437 aa overlap (1-437:1-437)
10 20 30 40 50 60
pF1KB0 MSAVLLLALLGFILPLPGVQALLCQFGTVQHVWKVSDLPRQWTPKNTSCDSGLGCQDTLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 MSAVLLLALLGFILPLPGVQALLCQFGTVQHVWKVSDLPRQWTPKNTSCDSGLGCQDTLM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 LIESGPQVSLVLSKGCTEAKDQEPRVTEHRMGPGLSLISYTFVCRQEDFCNNLVNSLPLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 LIESGPQVSLVLSKGCTEAKDQEPRVTEHRMGPGLSLISYTFVCRQEDFCNNLVNSLPLW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 APQPPADPGSLRCPVCLSMEGCLEGTTEEICPKGTTHCYDGLLRLRGGGIFSNLRVQGCM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 APQPPADPGSLRCPVCLSMEGCLEGTTEEICPKGTTHCYDGLLRLRGGGIFSNLRVQGCM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 PQPGCNLLNGTQEIGPVGMTENCNRKDFLTCHRGTTIMTHGNLAQEPTDWTTSNTEMCEV
::: :::::::::::::::::::. :::::::::::::::::::::::::::::::::::
NP_065 PQPVCNLLNGTQEIGPVGMTENCDMKDFLTCHRGTTIMTHGNLAQEPTDWTTSNTEMCEV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 GQVCQETLLLIDVGLTSTLVGTKGCSTVGAQNSQKTTIHSAPPGVLVASYTHFCSSDLCN
::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 GQVCQETLLLLDVGLTSTLVGTKGCSTVGAQNSQKTTIHSAPPGVLVASYTHFCSSDLCN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 SASSSSVLLNSLPPQAAPVPGDRQCPTCVQPLGTCSSGSPRMTCPRGATHCYDGYIHLSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 SASSSSVLLNSLPPQAAPVPGDRQCPTCVQPLGTCSSGSPRMTCPRGATHCYDGYIHLSG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB0 GGLSTKMSIQGCVAQPSSFLLNHTRQIGIFSAREKRDVQPPASQHEGGGAEGLESLTWGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 GGLSTKMSIQGCVAQPSSFLLNHTRQIGIFSAREKRDVQPPASQHEGGGAEGLESLTWGV
370 380 390 400 410 420
430
pF1KB0 GLALAPALWWGVVCPSC
:::::::::::::::::
NP_065 GLALAPALWWGVVCPSC
430
>>XP_016882510 (OMIM: 162860) PREDICTED: CD177 antigen i (467 aa)
initn: 3146 init1: 2841 opt: 2844 Z-score: 2817.3 bits: 530.5 E(85289): 3.5e-150
Smith-Waterman score: 2844; 95.8% identity (97.4% similar) in 427 aa overlap (1-427:1-426)
10 20 30 40 50 60
pF1KB0 MSAVLLLALLGFILPLPGVQALLCQFGTVQHVWKVSDLPRQWTPKNTSCDSGLGCQDTLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSAVLLLALLGFILPLPGVQALLCQFGTVQHVWKVSDLPRQWTPKNTSCDSGLGCQDTLM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 LIESGPQVSLVLSKGCTEAKDQEPRVTEHRMGPGLSLISYTFVCRQEDFCNNLVNSLPLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LIESGPQVSLVLSKGCTEAKDQEPRVTEHRMGPGLSLISYTFVCRQEDFCNNLVNSLPLW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 APQPPADPGSLRCPVCLSMEGCLEGTTEEICPKGTTHCYDGLLRLRGGGIFSNLRVQGCM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 APQPPADPGSLRCPVCLSMEGCLEGTTEEICPKGTTHCYDGLLRLRGGGIFSNLRVQGCM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 PQPGCNLLNGTQEIGPVGMTENCNRKDFLTCHRGTTIMTHGNLAQEPTDWTTSNTEMCEV
::: :::::::::::::::::::. :::::::::::::::::::::::::::::::::::
XP_016 PQPVCNLLNGTQEIGPVGMTENCDMKDFLTCHRGTTIMTHGNLAQEPTDWTTSNTEMCEV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 GQVCQETLLLIDVGLTSTLVGTKGCSTVGAQNSQKTTIHSAPPGVLVASYTHFCSSDLCN
::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GQVCQETLLLLDVGLTSTLVGTKGCSTVGAQNSQKTTIHSAPPGVLVASYTHFCSSDLCN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 SASSSSVLLNSLPPQAAPVPGDRQCPTCVQPLGTCSSGSPRMTCPRGATHCYDGYIHLSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SASSSSVLLNSLPPQAAPVPGDRQCPTCVQPLGTCSSGSPRMTCPRGATHCYDGYIHLSG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB0 GGLSTKMSIQGCVAQPSSFLLNHTRQIGIFSAREKRDVQPPASQHEGGGAEGLESLTWGV
:::::::::::::::::::::::::::::::::::::::::::::::: : . . . .:
XP_016 GGLSTKMSIQGCVAQPSSFLLNHTRQIGIFSAREKRDVQPPASQHEGGPPE-VGTKAAAV
370 380 390 400 410
430
pF1KB0 GLALAPALWWGVVCPSC
. :::
XP_016 HFCWAPAHREDPSISLVCTFLLCMRSQGFPGAHRCGRGRGRRTGAMGA
420 430 440 450 460
>>XP_016882511 (OMIM: 162860) PREDICTED: CD177 antigen i (412 aa)
initn: 2830 init1: 2830 opt: 2830 Z-score: 2804.2 bits: 527.9 E(85289): 1.9e-149
Smith-Waterman score: 2830; 99.0% identity (99.5% similar) in 407 aa overlap (1-407:1-407)
10 20 30 40 50 60
pF1KB0 MSAVLLLALLGFILPLPGVQALLCQFGTVQHVWKVSDLPRQWTPKNTSCDSGLGCQDTLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSAVLLLALLGFILPLPGVQALLCQFGTVQHVWKVSDLPRQWTPKNTSCDSGLGCQDTLM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 LIESGPQVSLVLSKGCTEAKDQEPRVTEHRMGPGLSLISYTFVCRQEDFCNNLVNSLPLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LIESGPQVSLVLSKGCTEAKDQEPRVTEHRMGPGLSLISYTFVCRQEDFCNNLVNSLPLW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 APQPPADPGSLRCPVCLSMEGCLEGTTEEICPKGTTHCYDGLLRLRGGGIFSNLRVQGCM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 APQPPADPGSLRCPVCLSMEGCLEGTTEEICPKGTTHCYDGLLRLRGGGIFSNLRVQGCM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 PQPGCNLLNGTQEIGPVGMTENCNRKDFLTCHRGTTIMTHGNLAQEPTDWTTSNTEMCEV
::: :::::::::::::::::::. :::::::::::::::::::::::::::::::::::
XP_016 PQPVCNLLNGTQEIGPVGMTENCDMKDFLTCHRGTTIMTHGNLAQEPTDWTTSNTEMCEV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 GQVCQETLLLIDVGLTSTLVGTKGCSTVGAQNSQKTTIHSAPPGVLVASYTHFCSSDLCN
::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GQVCQETLLLLDVGLTSTLVGTKGCSTVGAQNSQKTTIHSAPPGVLVASYTHFCSSDLCN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 SASSSSVLLNSLPPQAAPVPGDRQCPTCVQPLGTCSSGSPRMTCPRGATHCYDGYIHLSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SASSSSVLLNSLPPQAAPVPGDRQCPTCVQPLGTCSSGSPRMTCPRGATHCYDGYIHLSG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB0 GGLSTKMSIQGCVAQPSSFLLNHTRQIGIFSAREKRDVQPPASQHEGGGAEGLESLTWGV
:::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GGLSTKMSIQGCVAQPSSFLLNHTRQIGIFSAREKRDVQPPASQHEGVEVPH
370 380 390 400 410
430
pF1KB0 GLALAPALWWGVVCPSC
>>NP_001123483 (OMIM: 612665) testis-expressed sequence (249 aa)
initn: 411 init1: 199 opt: 430 Z-score: 434.6 bits: 88.7 E(85289): 1.8e-17
Smith-Waterman score: 464; 33.9% identity (66.1% similar) in 224 aa overlap (209-428:26-241)
180 190 200 210 220 230
pF1KB0 CMPQPGCNLLNGTQEIGPVGMTENCNRKDFLTCHRGTTIMTHGNLAQEPTDWTTSNTEMC
: :..: .. .... :. .::: ..: :
NP_001 MGTPRIQHLLILLVLGASLLTSGLELYCQKGLSMTVEADPANM-FNWTTEEVETC
10 20 30 40 50
240 250 260 270 280 290
pF1KB0 EVGQVCQETLLLIDVGLTSTLVGTKGCSTVGAQNSQKTTIHSAPPGVLVASYTHFCSSDL
. : .::::.:.: .: .....:::: : ... . ::.:::..:.::...: ...
NP_001 DKGALCQETILIIKAGTETAILATKGCIPEG-EEAITIVQHSSPPGLIVTSYSNYCEDSF
60 70 80 90 100 110
300 310 320 330 340 350
pF1KB0 CNSASSSSVLLNSLPPQAAPVPGDRQCPTCVQPLGTCSSGSPRMTCPRGATHCYDGYIHL
::. .: : . . :. : .::::: :::: : .: . :: :.:.::.: ...
NP_001 CNDKDSLSQFWEFSETTASTVSTTLHCPTCVA-LGTCFS-APSLPCPNGTTRCYQGKLEI
120 130 140 150 160 170
360 370 380 390 400 410
pF1KB0 SGGGLSTKMSIQGCVAQPSSFLLNHTRQIGIFSARE----KRDVQPPASQHEGGGAEGLE
.:::. ... ..::.:. . :.. .: . .:: . .:: ... :: :
NP_001 TGGGIESSVEVKGCTAMIGCRLMSGILAVGPMFVREACPHQLLTQPRKTEN---GATCLP
180 190 200 210 220
420 430
pF1KB0 SLTWGVGLALAPALWWGVVCPSC
.::. : : : :
NP_001 IPVWGLQLLL-PLLLPSFIHFS
230 240
>>NP_113639 (OMIM: 612665) testis-expressed sequence 101 (267 aa)
initn: 411 init1: 199 opt: 430 Z-score: 434.2 bits: 88.8 E(85289): 1.9e-17
Smith-Waterman score: 464; 33.9% identity (66.1% similar) in 224 aa overlap (209-428:44-259)
180 190 200 210 220 230
pF1KB0 CMPQPGCNLLNGTQEIGPVGMTENCNRKDFLTCHRGTTIMTHGNLAQEPTDWTTSNTEMC
: :..: .. .... :. .::: ..: :
NP_113 SPEEAMGTPRIQHLLILLVLGASLLTSGLELYCQKGLSMTVEADPANM-FNWTTEEVETC
20 30 40 50 60 70
240 250 260 270 280 290
pF1KB0 EVGQVCQETLLLIDVGLTSTLVGTKGCSTVGAQNSQKTTIHSAPPGVLVASYTHFCSSDL
. : .::::.:.: .: .....:::: : ... . ::.:::..:.::...: ...
NP_113 DKGALCQETILIIKAGTETAILATKGCIPEG-EEAITIVQHSSPPGLIVTSYSNYCEDSF
80 90 100 110 120 130
300 310 320 330 340 350
pF1KB0 CNSASSSSVLLNSLPPQAAPVPGDRQCPTCVQPLGTCSSGSPRMTCPRGATHCYDGYIHL
::. .: : . . :. : .::::: :::: : .: . :: :.:.::.: ...
NP_113 CNDKDSLSQFWEFSETTASTVSTTLHCPTCVA-LGTCFS-APSLPCPNGTTRCYQGKLEI
140 150 160 170 180
360 370 380 390 400 410
pF1KB0 SGGGLSTKMSIQGCVAQPSSFLLNHTRQIGIFSARE----KRDVQPPASQHEGGGAEGLE
.:::. ... ..::.:. . :.. .: . .:: . .:: ... :: :
NP_113 TGGGIESSVEVKGCTAMIGCRLMSGILAVGPMFVREACPHQLLTQPRKTEN---GATCLP
190 200 210 220 230 240
420 430
pF1KB0 SLTWGVGLALAPALWWGVVCPSC
.::. : : : :
NP_113 IPVWGLQLLL-PLLLPSFIHFS
250 260
>>XP_005259360 (OMIM: 612665) PREDICTED: testis-expresse (305 aa)
initn: 432 init1: 199 opt: 430 Z-score: 433.4 bits: 88.8 E(85289): 2.1e-17
Smith-Waterman score: 464; 33.9% identity (66.1% similar) in 224 aa overlap (209-428:82-297)
180 190 200 210 220 230
pF1KB0 CMPQPGCNLLNGTQEIGPVGMTENCNRKDFLTCHRGTTIMTHGNLAQEPTDWTTSNTEMC
: :..: .. .... :. .::: ..: :
XP_005 SPEEAMGTPRIQHLLILLVLGASLLTSGLELYCQKGLSMTVEADPANM-FNWTTEEVETC
60 70 80 90 100 110
240 250 260 270 280 290
pF1KB0 EVGQVCQETLLLIDVGLTSTLVGTKGCSTVGAQNSQKTTIHSAPPGVLVASYTHFCSSDL
. : .::::.:.: .: .....:::: : ... . ::.:::..:.::...: ...
XP_005 DKGALCQETILIIKAGTETAILATKGCIPEG-EEAITIVQHSSPPGLIVTSYSNYCEDSF
120 130 140 150 160
300 310 320 330 340 350
pF1KB0 CNSASSSSVLLNSLPPQAAPVPGDRQCPTCVQPLGTCSSGSPRMTCPRGATHCYDGYIHL
::. .: : . . :. : .::::: :::: : .: . :: :.:.::.: ...
XP_005 CNDKDSLSQFWEFSETTASTVSTTLHCPTCVA-LGTCFS-APSLPCPNGTTRCYQGKLEI
170 180 190 200 210 220
360 370 380 390 400 410
pF1KB0 SGGGLSTKMSIQGCVAQPSSFLLNHTRQIGIFSARE----KRDVQPPASQHEGGGAEGLE
.:::. ... ..::.:. . :.. .: . .:: . .:: ... :: :
XP_005 TGGGIESSVEVKGCTAMIGCRLMSGILAVGPMFVREACPHQLLTQPRKTEN---GATCLP
230 240 250 260 270 280
420 430
pF1KB0 SLTWGVGLALAPALWWGVVCPSC
.::. : : : :
XP_005 IPVWGLQLLL-PLLLPSFIHFS
290 300
>>NP_055215 (OMIM: 609484) ly6/PLAUR domain-containing p (346 aa)
initn: 97 init1: 76 opt: 173 Z-score: 178.6 bits: 41.8 E(85289): 0.0033
Smith-Waterman score: 173; 23.3% identity (56.4% similar) in 172 aa overlap (214-373:27-194)
190 200 210 220 230 240
pF1KB0 GCNLLNGTQEIGPVGMTENCNRKDFLTCHRGTTIMTHGNLAQEPTDWTTSN---TEMCEV
:. . . .:. : . : : :
NP_055 MDPARKAGAQAMIWTAGWLLLLLLRGGAQALECYSCVQKADDGCSPNKMKTVKCAP
10 20 30 40 50
250 260 270 280 290
pF1KB0 G-QVCQETLLLIDVGLTSTLVGTKGC-STVGAQNSQKTTIHSAPPGVLVASYTHFCSSDL
: .:: :.. ... . ....:: : . ..:.. .: :.:. . :..:
NP_055 GVDVCTEAVGAVETIHGQFSLAVRGCGSGLPGKNDRGLDLH----GLLAFIQLQQCAQDR
60 70 80 90 100 110
300 310 320 330 340 350
pF1KB0 CNSASS-SSVLLNSLPPQAAPVPGDRQCPTCVQ-PLGTCSSGSPRM-TCPRGATH----C
::. . .: :. ..: :. .: .:: .:.. :: . .: .. : :
NP_055 CNAKLNLTSRALDPAGNESAYPPNGVECYSCVGLSREACQGTSPPVVSCYNASDHVYKGC
120 130 140 150 160 170
360 370 380 390 400 410
pF1KB0 YDGYIHLSGGGLSTKMSIQGCVAQPSSFLLNHTRQIGIFSAREKRDVQPPASQHEGGGAE
.:: . :......... ..:::
NP_055 FDGNVTLTAANVTVSLPVRGCVQDEFCTRDGVTGPGFTLSGSCCQGSRCNSDLRNKTYFS
180 190 200 210 220 230
437 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 17:36:27 2016 done: Sat Nov 5 17:36:29 2016
Total Scan time: 10.390 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]